Clone Sequence Records
BO07182.3prime Sequence
937 bp (761 high quality bases) assembled on 2005-12-04
> BO07182.3prime
ATGGTCTAGAAAGCTTGCGGCGTCGAAGGGCCGCTTGTGGGCGCTATGCT
CATCGCCGCTCATTTCGCGGGACAAGTCCGAGATCACCTCCTTGTAGATG
AGCGGATCGATGTTCTTGCCCAGCTGATAGAGCAGGAACCAATCGCCGAT
GTTGCACTTGTTGGCCACCAGTTCGACCTCCTCGCTTTCAGCCAAACGGG
AACGGGCTCGGAGTAGGAGATGGCGGAGCTTGGGACCCGCCACAACAGCG
ATTCTGTAGATAAGCGATATTCCCGACATGATGCTCAGGATGATGAACCA
GAACCACAGGAACACGTAGATCTTTTCGTTGACAATGTTCAGGGGCAGCA
CGCACAGACCGTCGTGGGTCTGCACACTGCCGGATGGACCGTATTTGTGG
AACGTGCATTTGGTGACCTTCGGAAAGACCCGCGCCATGGGATCAATGCG
CTCATCCGGCTCCAGCTCAGTGAACTTCAAGACATCACTGCCGTAGGTGC
TGAACTCGCCGTCGAGGAAGAAGTCCACAAAGTAGATCTGTCCAATCACA
TTCACAAAGTTCAGGGCTTCGCACACGAAGAATCGGAAGGCGTAGAAATT
GTGGCGGTTCAGGTTGCCAATGAAGTAGTCGACCAGGATCTTTTTGCGAT
CGTTCTTGCACTCATCGTTCACAATAGGGCTGTTGAGATCCATGACCAGC
ATCTTGAGGCGTCCGCCTTCCCAGGACTTCCACAGATAGCGCGGTACGTA
GAACAGGATGGCCTGGAAGAAGAGGACGAAGCACACCCACTGGTAGTACT
TGTGGTACTTCACCTCGTCCTCGCCCTCCACATGGGAGCCCACGCCGGGC
TGCACCACATCGCGTCCGGTGATGCCCGTTAGCCTCTCTGGCACGGAAAC
GTAAAGTAGATCCAGCAGTAGGTGTCCATCACGCCCA
BO07182.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:57:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4590-PA | 1104 | inx2-RA | 224..1101 | 896..19 | 4390 | 100 | Minus |
CG4590-PB | 1104 | inx2-RB | 224..1101 | 896..19 | 4390 | 100 | Minus |
CG4590-PA | 1104 | inx2-RA | 182..222 | 937..897 | 180 | 97.5 | Minus |
CG4590-PB | 1104 | inx2-RB | 182..222 | 937..897 | 180 | 97.5 | Minus |
CG3039-PA | 1089 | ogre-RA | 322..362 | 798..758 | 155 | 95.1 | Minus |
CG3039-PB | 1089 | ogre-RB | 322..362 | 798..758 | 155 | 95.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:27:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Inx2-RD | 5266 | CG4590-RD | 425..1344 | 937..19 | 4560 | 99.8 | Minus |
Inx2-RC | 1832 | CG4590-RC | 639..1558 | 937..19 | 4560 | 99.8 | Minus |
Inx2-RB | 2758 | CG4590-RB | 425..1344 | 937..19 | 4560 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:27:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6999310..7000229 | 937..19 | 4535 | 99.8 | Minus |
X | 23542271 | X | 6974772..6974895 | 295..418 | 215 | 78.2 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:27:31 has no hits.
BO07182.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:11:43 Download gff for
BO07182.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inx2-PA | 183..1104 | 15..936 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:51:36 Download gff for
BO07182.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4590-PB | 183..1104 | 15..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:02:39 Download gff for
BO07182.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Inx2-RB | 426..1349 | 11..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:58:54 Download gff for
BO07182.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Inx2-RB | 426..1349 | 11..936 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:58:54 Download gff for
BO07182.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6999311..7000234 | 11..936 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:02:39 Download gff for
BO07182.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6893344..6894267 | 11..936 | 99 | | Minus |
BO07182.5prime Sequence
804 bp (796 high quality bases) assembled on 2005-12-04
> BO07182.5prime
GAAGTTATCAGTCGACATGTTTGATGTCTTTGGGTCCGTCAAGGGCCTGC
TGAAGATCGACCAGGTGTGCATCGACAACAATGTCTTTCGCATGCACTAC
AAGGCCACGGTGATCATACTGATCGCCTTCTCCCTCCTGGTGACCTCGCG
CCAATACATCGGTGACCCCATCGATTGTATTGTGGACGAGATCCCACTGG
GCGTGATGGACACCTACTGCTGGATCTACTCTACGTTTACCGTGCCAGAG
AGGCTAACGGGCATCACCGGACGCGATGTGGTGCAGCCCGGCGTGGGCTC
CCATGTGGAGGGCGAGGACGAGGTGAAGTACCACAAGTACTACCAGTGGG
TGTGCTTCGTCCTCTTCTTCCAGGCCATCCTGTTCTACGTACCGCGCTAT
CTGTGGAAGTCCTGGGAAGGCGGACGCCTCAAGATGCTGGTCATGGATCT
CAACAGCCCTATTGTGAACGATGAGTGCAAGAACGATCGCAAAAAGATCC
TGGTCGACTACTTCATTGGCAACCTGAACCGCCACAATTTCTACGCCTTC
CGATTCTTCGTGTGCGAAGCCCTGAACTTTGTGAATGTGATTGGACAGAT
CTACTTTGTGGACTTCTTCCTCGACGGCGAGTTCAGCACCTACGGCAGTG
ATGTCTTGAAGTTCACTGAGCTGGAGCCGGATGAGCGCATTGATCCCATG
GCGCGGGTCTTTCCGAAGGTCACCAAATGCACGTTCCACAAATACGGTCC
ATCCGGCAGTGTGCAGACCCACGACGGTCTGTGCGTGCTGCCCCTGAACA
TTGT
BO07182.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:57:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4590-PA | 1104 | inx2-RA | 1..788 | 17..804 | 3940 | 100 | Plus |
CG4590-PB | 1104 | inx2-RB | 1..788 | 17..804 | 3940 | 100 | Plus |
CG3039-PA | 1089 | ogre-RA | 322..362 | 338..378 | 155 | 95.1 | Plus |
CG3039-PB | 1089 | ogre-RB | 322..362 | 338..378 | 155 | 95.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:27:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Inx2-RD | 5266 | CG4590-RD | 244..1031 | 17..804 | 3940 | 100 | Plus |
Inx2-RC | 1832 | CG4590-RC | 458..1245 | 17..804 | 3940 | 100 | Plus |
Inx2-RB | 2758 | CG4590-RB | 244..1031 | 17..804 | 3940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:27:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6999129..6999916 | 17..804 | 3940 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:27:36 has no hits.
BO07182.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:11:44 Download gff for
BO07182.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inx2-PA | 1..788 | 17..804 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:51:37 Download gff for
BO07182.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4590-PB | 1..788 | 17..804 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:02:40 Download gff for
BO07182.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Inx2-RB | 244..1031 | 17..804 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:59:04 Download gff for
BO07182.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Inx2-RB | 244..1031 | 17..804 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:59:04 Download gff for
BO07182.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6999129..6999916 | 17..804 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:02:40 Download gff for
BO07182.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6893162..6893949 | 17..804 | 100 | | Plus |
BO07182.complete Sequence
1135 bp (1135 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630697
> BO07182.complete
GAAGTTATCAGTCGACATGTTTGATGTCTTTGGGTCCGTCAAGGGCCTGC
TGAAGATCGACCAGGTGTGCATCGACAACAATGTCTTTCGCATGCACTAC
AAGGCCACGGTGATCATACTGATCGCCTTCTCCCTCCTGGTGACCTCGCG
CCAATACATCGGTGACCCCATCGATTGTATTGTGGACGAGATCCCACTGG
GCGTGATGGACACCTACTGCTGGATCTACTCTACGTTTACCGTGCCAGAG
AGGCTAACGGGCATCACCGGACGCGATGTGGTGCAGCCCGGCGTGGGCTC
CCATGTGGAGGGCGAGGACGAGGTGAAGTACCACAAGTACTACCAGTGGG
TGTGCTTCGTCCTCTTCTTCCAGGCCATCCTGTTCTACGTACCGCGCTAT
CTGTGGAAGTCCTGGGAAGGCGGACGCCTCAAGATGCTGGTCATGGATCT
CAACAGCCCTATTGTGAACGATGAGTGCAAGAACGATCGCAAAAAGATCC
TGGTCGACTACTTCATTGGCAACCTGAACCGCCACAATTTCTACGCCTTC
CGATTCTTCGTGTGCGAAGCCCTGAACTTTGTGAATGTGATTGGACAGAT
CTACTTTGTGGACTTCTTCCTCGACGGCGAGTTCAGCACCTACGGCAGTG
ATGTCTTGAAGTTCACTGAGCTGGAGCCGGATGAGCGCATTGATCCCATG
GCGCGGGTCTTTCCGAAGGTCACCAAATGCACGTTCCACAAATACGGTCC
ATCCGGCAGTGTGCAGACCCACGACGGTCTGTGCGTGCTGCCCCTGAACA
TTGTCAACGAAAAGATCTACGTGTTCCTGTGGTTCTGGTTCATCATCCTG
AGCATCATGTCGGGAATATCGCTTATCTACAGAATCGCTGTTGTGGCGGG
TCCCAAGCTCCGCCATCTCCTACTCCGAGCCCGTTCCCGTTTGGCTGAAA
GCGAGGAGGTCGAACTGGTGGCCAACAAGTGCAACATCGGCGATTGGTTC
CTGCTCTATCAGCTGGGCAAGAACATCGATCCGCTCATCTACAAGGAGGT
GATCTCGGACTTGTCCCGCGAAATGAGCGGCGATGAGCATAGCGCCCACA
AGCGGCCCTTCGACGCCGCAAGCTTTCTAGACCAT
BO07182.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:08:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Inx2-RD | 1104 | CG4590-PD | 1..1101 | 17..1117 | 5505 | 100 | Plus |
Inx2-RC | 1104 | CG4590-PC | 1..1101 | 17..1117 | 5505 | 100 | Plus |
Inx2-RB | 1104 | CG4590-PB | 1..1101 | 17..1117 | 5505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:08:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Inx2-RD | 5266 | CG4590-RD | 244..1344 | 17..1117 | 5505 | 100 | Plus |
Inx2-RC | 1832 | CG4590-RC | 458..1558 | 17..1117 | 5505 | 100 | Plus |
Inx2-RB | 2758 | CG4590-RB | 244..1344 | 17..1117 | 5505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:08:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6999129..7000229 | 17..1117 | 5505 | 100 | Plus |
X | 23542271 | X | 6974772..6974895 | 841..718 | 215 | 78.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:08:19 has no hits.
BO07182.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:47 Download gff for
BO07182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inx2-RB | 1..1104 | 17..1121 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:40:05 Download gff for
BO07182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inx2-RB | 241..1346 | 17..1125 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:52 Download gff for
BO07182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Inx2-RB | 250..1344 | 23..1119 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:47 Download gff for
BO07182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inx2-RB | 241..1346 | 17..1125 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:43 Download gff for
BO07182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Inx2-RB | 250..1344 | 23..1119 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:43 Download gff for
BO07182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6999135..7000229 | 23..1119 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:52 Download gff for
BO07182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6893168..6894262 | 23..1119 | 99 | | Plus |
BO07182.pep Sequence
Translation from 16 to 1135
> BO07182.pep
MFDVFGSVKGLLKIDQVCIDNNVFRMHYKATVIILIAFSLLVTSRQYIGD
PIDCIVDEIPLGVMDTYCWIYSTFTVPERLTGITGRDVVQPGVGSHVEGE
DEVKYHKYYQWVCFVLFFQAILFYVPRYLWKSWEGGRLKMLVMDLNSPIV
NDECKNDRKKILVDYFIGNLNRHNFYAFRFFVCEALNFVNVIGQIYFVDF
FLDGEFSTYGSDVLKFTELEPDERIDPMARVFPKVTKCTFHKYGPSGSVQ
THDGLCVLPLNIVNEKIYVFLWFWFIILSIMSGISLIYRIAVVAGPKLRH
LLLRARSRLAESEEVELVANKCNIGDWFLLYQLGKNIDPLIYKEVISDLS
REMSGDEHSAHKRPFDAASFLDH
BO07182.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:44:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Inx2-PD | 367 | CG4590-PD | 1..367 | 1..367 | 1958 | 100 | Plus |
Inx2-PC | 367 | CG4590-PC | 1..367 | 1..367 | 1958 | 100 | Plus |
Inx2-PB | 367 | CG4590-PB | 1..367 | 1..367 | 1958 | 100 | Plus |
Inx2-PA | 367 | CG4590-PA | 1..367 | 1..367 | 1958 | 100 | Plus |
shakB-PA | 372 | CG34358-PA | 1..363 | 1..364 | 1039 | 48.5 | Plus |