Clone BO07182 Report

Search the DGRC for BO07182

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:71
Well:82
Vector:pDNR-Dual
Associated Gene/Transcriptinx2-RA
Protein status:BO07182.pep: validated full length
Sequenced Size:1135

Clone Sequence Records

BO07182.3prime Sequence

937 bp (761 high quality bases) assembled on 2005-12-04

> BO07182.3prime
ATGGTCTAGAAAGCTTGCGGCGTCGAAGGGCCGCTTGTGGGCGCTATGCT
CATCGCCGCTCATTTCGCGGGACAAGTCCGAGATCACCTCCTTGTAGATG
AGCGGATCGATGTTCTTGCCCAGCTGATAGAGCAGGAACCAATCGCCGAT
GTTGCACTTGTTGGCCACCAGTTCGACCTCCTCGCTTTCAGCCAAACGGG
AACGGGCTCGGAGTAGGAGATGGCGGAGCTTGGGACCCGCCACAACAGCG
ATTCTGTAGATAAGCGATATTCCCGACATGATGCTCAGGATGATGAACCA
GAACCACAGGAACACGTAGATCTTTTCGTTGACAATGTTCAGGGGCAGCA
CGCACAGACCGTCGTGGGTCTGCACACTGCCGGATGGACCGTATTTGTGG
AACGTGCATTTGGTGACCTTCGGAAAGACCCGCGCCATGGGATCAATGCG
CTCATCCGGCTCCAGCTCAGTGAACTTCAAGACATCACTGCCGTAGGTGC
TGAACTCGCCGTCGAGGAAGAAGTCCACAAAGTAGATCTGTCCAATCACA
TTCACAAAGTTCAGGGCTTCGCACACGAAGAATCGGAAGGCGTAGAAATT
GTGGCGGTTCAGGTTGCCAATGAAGTAGTCGACCAGGATCTTTTTGCGAT
CGTTCTTGCACTCATCGTTCACAATAGGGCTGTTGAGATCCATGACCAGC
ATCTTGAGGCGTCCGCCTTCCCAGGACTTCCACAGATAGCGCGGTACGTA
GAACAGGATGGCCTGGAAGAAGAGGACGAAGCACACCCACTGGTAGTACT
TGTGGTACTTCACCTCGTCCTCGCCCTCCACATGGGAGCCCACGCCGGGC
TGCACCACATCGCGTCCGGTGATGCCCGTTAGCCTCTCTGGCACGGAAAC
GTAAAGTAGATCCAGCAGTAGGTGTCCATCACGCCCA

BO07182.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG4590-PA 1104 inx2-RA 224..1101 896..19 4390 100 Minus
CG4590-PB 1104 inx2-RB 224..1101 896..19 4390 100 Minus
CG4590-PA 1104 inx2-RA 182..222 937..897 180 97.5 Minus
CG4590-PB 1104 inx2-RB 182..222 937..897 180 97.5 Minus
CG3039-PA 1089 ogre-RA 322..362 798..758 155 95.1 Minus
CG3039-PB 1089 ogre-RB 322..362 798..758 155 95.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:27:31
Subject Length Description Subject Range Query Range Score Percent Strand
Inx2-RD 5266 CG4590-RD 425..1344 937..19 4560 99.8 Minus
Inx2-RC 1832 CG4590-RC 639..1558 937..19 4560 99.8 Minus
Inx2-RB 2758 CG4590-RB 425..1344 937..19 4560 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:27:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6999310..7000229 937..19 4535 99.8 Minus
X 23542271 X 6974772..6974895 295..418 215 78.2 Plus
Blast to na_te.dros performed on 2015-02-13 05:27:31 has no hits.

BO07182.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:11:43 Download gff for BO07182.3prime
Subject Subject Range Query Range Percent Splice Strand
inx2-PA 183..1104 15..936 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:51:36 Download gff for BO07182.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4590-PB 183..1104 15..936 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:02:39 Download gff for BO07182.3prime
Subject Subject Range Query Range Percent Splice Strand
Inx2-RB 426..1349 11..936 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:58:54 Download gff for BO07182.3prime
Subject Subject Range Query Range Percent Splice Strand
Inx2-RB 426..1349 11..936 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:58:54 Download gff for BO07182.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6999311..7000234 11..936 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:02:39 Download gff for BO07182.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6893344..6894267 11..936 99   Minus

BO07182.5prime Sequence

804 bp (796 high quality bases) assembled on 2005-12-04

> BO07182.5prime
GAAGTTATCAGTCGACATGTTTGATGTCTTTGGGTCCGTCAAGGGCCTGC
TGAAGATCGACCAGGTGTGCATCGACAACAATGTCTTTCGCATGCACTAC
AAGGCCACGGTGATCATACTGATCGCCTTCTCCCTCCTGGTGACCTCGCG
CCAATACATCGGTGACCCCATCGATTGTATTGTGGACGAGATCCCACTGG
GCGTGATGGACACCTACTGCTGGATCTACTCTACGTTTACCGTGCCAGAG
AGGCTAACGGGCATCACCGGACGCGATGTGGTGCAGCCCGGCGTGGGCTC
CCATGTGGAGGGCGAGGACGAGGTGAAGTACCACAAGTACTACCAGTGGG
TGTGCTTCGTCCTCTTCTTCCAGGCCATCCTGTTCTACGTACCGCGCTAT
CTGTGGAAGTCCTGGGAAGGCGGACGCCTCAAGATGCTGGTCATGGATCT
CAACAGCCCTATTGTGAACGATGAGTGCAAGAACGATCGCAAAAAGATCC
TGGTCGACTACTTCATTGGCAACCTGAACCGCCACAATTTCTACGCCTTC
CGATTCTTCGTGTGCGAAGCCCTGAACTTTGTGAATGTGATTGGACAGAT
CTACTTTGTGGACTTCTTCCTCGACGGCGAGTTCAGCACCTACGGCAGTG
ATGTCTTGAAGTTCACTGAGCTGGAGCCGGATGAGCGCATTGATCCCATG
GCGCGGGTCTTTCCGAAGGTCACCAAATGCACGTTCCACAAATACGGTCC
ATCCGGCAGTGTGCAGACCCACGACGGTCTGTGCGTGCTGCCCCTGAACA
TTGT

BO07182.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:57:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG4590-PA 1104 inx2-RA 1..788 17..804 3940 100 Plus
CG4590-PB 1104 inx2-RB 1..788 17..804 3940 100 Plus
CG3039-PA 1089 ogre-RA 322..362 338..378 155 95.1 Plus
CG3039-PB 1089 ogre-RB 322..362 338..378 155 95.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:27:36
Subject Length Description Subject Range Query Range Score Percent Strand
Inx2-RD 5266 CG4590-RD 244..1031 17..804 3940 100 Plus
Inx2-RC 1832 CG4590-RC 458..1245 17..804 3940 100 Plus
Inx2-RB 2758 CG4590-RB 244..1031 17..804 3940 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:27:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6999129..6999916 17..804 3940 100 Plus
Blast to na_te.dros performed on 2015-02-13 05:27:36 has no hits.

BO07182.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:11:44 Download gff for BO07182.5prime
Subject Subject Range Query Range Percent Splice Strand
inx2-PA 1..788 17..804 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:51:37 Download gff for BO07182.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4590-PB 1..788 17..804 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:02:40 Download gff for BO07182.5prime
Subject Subject Range Query Range Percent Splice Strand
Inx2-RB 244..1031 17..804 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:59:04 Download gff for BO07182.5prime
Subject Subject Range Query Range Percent Splice Strand
Inx2-RB 244..1031 17..804 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:59:04 Download gff for BO07182.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6999129..6999916 17..804 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:02:40 Download gff for BO07182.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6893162..6893949 17..804 100   Plus

BO07182.complete Sequence

1135 bp (1135 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630697

> BO07182.complete
GAAGTTATCAGTCGACATGTTTGATGTCTTTGGGTCCGTCAAGGGCCTGC
TGAAGATCGACCAGGTGTGCATCGACAACAATGTCTTTCGCATGCACTAC
AAGGCCACGGTGATCATACTGATCGCCTTCTCCCTCCTGGTGACCTCGCG
CCAATACATCGGTGACCCCATCGATTGTATTGTGGACGAGATCCCACTGG
GCGTGATGGACACCTACTGCTGGATCTACTCTACGTTTACCGTGCCAGAG
AGGCTAACGGGCATCACCGGACGCGATGTGGTGCAGCCCGGCGTGGGCTC
CCATGTGGAGGGCGAGGACGAGGTGAAGTACCACAAGTACTACCAGTGGG
TGTGCTTCGTCCTCTTCTTCCAGGCCATCCTGTTCTACGTACCGCGCTAT
CTGTGGAAGTCCTGGGAAGGCGGACGCCTCAAGATGCTGGTCATGGATCT
CAACAGCCCTATTGTGAACGATGAGTGCAAGAACGATCGCAAAAAGATCC
TGGTCGACTACTTCATTGGCAACCTGAACCGCCACAATTTCTACGCCTTC
CGATTCTTCGTGTGCGAAGCCCTGAACTTTGTGAATGTGATTGGACAGAT
CTACTTTGTGGACTTCTTCCTCGACGGCGAGTTCAGCACCTACGGCAGTG
ATGTCTTGAAGTTCACTGAGCTGGAGCCGGATGAGCGCATTGATCCCATG
GCGCGGGTCTTTCCGAAGGTCACCAAATGCACGTTCCACAAATACGGTCC
ATCCGGCAGTGTGCAGACCCACGACGGTCTGTGCGTGCTGCCCCTGAACA
TTGTCAACGAAAAGATCTACGTGTTCCTGTGGTTCTGGTTCATCATCCTG
AGCATCATGTCGGGAATATCGCTTATCTACAGAATCGCTGTTGTGGCGGG
TCCCAAGCTCCGCCATCTCCTACTCCGAGCCCGTTCCCGTTTGGCTGAAA
GCGAGGAGGTCGAACTGGTGGCCAACAAGTGCAACATCGGCGATTGGTTC
CTGCTCTATCAGCTGGGCAAGAACATCGATCCGCTCATCTACAAGGAGGT
GATCTCGGACTTGTCCCGCGAAATGAGCGGCGATGAGCATAGCGCCCACA
AGCGGCCCTTCGACGCCGCAAGCTTTCTAGACCAT

BO07182.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:08:20
Subject Length Description Subject Range Query Range Score Percent Strand
Inx2-RD 1104 CG4590-PD 1..1101 17..1117 5505 100 Plus
Inx2-RC 1104 CG4590-PC 1..1101 17..1117 5505 100 Plus
Inx2-RB 1104 CG4590-PB 1..1101 17..1117 5505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
Inx2-RD 5266 CG4590-RD 244..1344 17..1117 5505 100 Plus
Inx2-RC 1832 CG4590-RC 458..1558 17..1117 5505 100 Plus
Inx2-RB 2758 CG4590-RB 244..1344 17..1117 5505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:08:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6999129..7000229 17..1117 5505 100 Plus
X 23542271 X 6974772..6974895 841..718 215 78.2 Minus
Blast to na_te.dros performed on 2014-11-27 13:08:19 has no hits.

BO07182.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:47 Download gff for BO07182.complete
Subject Subject Range Query Range Percent Splice Strand
inx2-RB 1..1104 17..1121 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:40:05 Download gff for BO07182.complete
Subject Subject Range Query Range Percent Splice Strand
inx2-RB 241..1346 17..1125 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:52 Download gff for BO07182.complete
Subject Subject Range Query Range Percent Splice Strand
Inx2-RB 250..1344 23..1119 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:47 Download gff for BO07182.complete
Subject Subject Range Query Range Percent Splice Strand
inx2-RB 241..1346 17..1125 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:43 Download gff for BO07182.complete
Subject Subject Range Query Range Percent Splice Strand
Inx2-RB 250..1344 23..1119 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:43 Download gff for BO07182.complete
Subject Subject Range Query Range Percent Splice Strand
X 6999135..7000229 23..1119 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:52 Download gff for BO07182.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6893168..6894262 23..1119 99   Plus

BO07182.pep Sequence

Translation from 16 to 1135

> BO07182.pep
MFDVFGSVKGLLKIDQVCIDNNVFRMHYKATVIILIAFSLLVTSRQYIGD
PIDCIVDEIPLGVMDTYCWIYSTFTVPERLTGITGRDVVQPGVGSHVEGE
DEVKYHKYYQWVCFVLFFQAILFYVPRYLWKSWEGGRLKMLVMDLNSPIV
NDECKNDRKKILVDYFIGNLNRHNFYAFRFFVCEALNFVNVIGQIYFVDF
FLDGEFSTYGSDVLKFTELEPDERIDPMARVFPKVTKCTFHKYGPSGSVQ
THDGLCVLPLNIVNEKIYVFLWFWFIILSIMSGISLIYRIAVVAGPKLRH
LLLRARSRLAESEEVELVANKCNIGDWFLLYQLGKNIDPLIYKEVISDLS
REMSGDEHSAHKRPFDAASFLDH

BO07182.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
Inx2-PD 367 CG4590-PD 1..367 1..367 1958 100 Plus
Inx2-PC 367 CG4590-PC 1..367 1..367 1958 100 Plus
Inx2-PB 367 CG4590-PB 1..367 1..367 1958 100 Plus
Inx2-PA 367 CG4590-PA 1..367 1..367 1958 100 Plus
shakB-PA 372 CG34358-PA 1..363 1..364 1039 48.5 Plus