Clone Sequence Records
BO07185.3prime Sequence
936 bp (846 high quality bases) assembled on 2005-12-04
> BO07185.3prime
ATGGTCTAGAAAGCTTGCATCGCGCTTGCTGCGCTTGCGATCCGAATGGC
TGCTGCGCTCGTTGTTCTTCTCCTCGGCACGCTTGGGCGCCTTTTTGGCC
ATGTTCAAGAACTGATCGAGACCGAAGGGATCCTCCTCCTTCTCGAACTC
AACGGGTCCACTCCTCTGGCCAGCGGCCGCCTCCTTGGAGGCACCGGAGA
ACTGCTTGTCTGGCACGAAACGCTTGGTATTTACAATGGCATCCAGATCA
CCGCCGTAGTTATCGCTATCCGCCTGCTTGCTGGGTCGGTAGATGTGAGC
GCCCAGTGTATTGGAATCGCGCCACGGCTTGTCGTACACATTGTACGCTT
CGTCATCACCGTAACCGGAGTCCATGCCCTTGGTGGTGTTGAATAGACGC
TGATCGAAGAGCGTTTCACCGTTGCCGGCACTCTTGGCGGGCAGACCCAA
AGCGATTTGCTCAGAAATGTCACGCTCCCTCTCCTTCTGCAGTTTCGATC
GCTTTTCGGGAGCCGCCCGCTGCAGGTTTCTATCCCGCTGGCGCTCCCTT
TGCCGCTCTGCCCGCAAGTCGTTGCGTTCACGCACCTCGGATCCTGTAGC
TCCGGAACCAGATGGCTCGGCTGCCTCCGGATTGCGTAGTCCCGCTCGCT
CTTCGCGAGCCCGCTGCGCCATCATACGCAGCATATCCTCCTTCTTCTCC
TTCTCCTTTTGGGCCAGCTTCTTTTCCAGCTGGGAGCGTGCCTCCACCGC
CTCGCGCGCCTTGCGATCGGCTATGTACAGCGCCTCGGCCATCTTGGCGA
ACTTCTCGTTGATGTGCACCTGCTGCAGACCGCGTCCATCGGCTGCCAGA
CGCTTGTCCAGTGGAATGGTGTAACCTTTGGCGTTCTTTCAGTTCGATAT
GCAGGGCGGGATCTTCCACTCCTTTTGCTCCTTGAC
BO07185.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:57:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8264-PA | 1644 | Bx42-RA | 724..1641 | 936..19 | 4565 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:06:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bx42-RB | 2403 | CG8264-RB | 881..1798 | 936..19 | 4575 | 99.9 | Minus |
Bx42-RA | 1955 | CG8264-RA | 881..1798 | 936..19 | 4575 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:06:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9104475..9105333 | 19..877 | 4295 | 100 | Plus |
X | 23542271 | X | 9105395..9105457 | 874..936 | 300 | 98.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:06:55 has no hits.
BO07185.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:11:47 Download gff for
BO07185.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx42-PA | 724..1644 | 18..936 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:51:41 Download gff for
BO07185.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8264-PA | 724..1644 | 18..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:42:23 Download gff for
BO07185.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx42-RA | 881..1798 | 19..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:12:23 Download gff for
BO07185.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx42-RA | 881..1798 | 19..936 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:12:23 Download gff for
BO07185.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9104475..9105331 | 19..875 | 100 | <- | Plus |
X | 9105397..9105457 | 876..936 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:42:23 Download gff for
BO07185.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8998508..8999364 | 19..875 | 100 | <- | Plus |
arm_X | 8999430..8999490 | 876..936 | 98 | | Plus |
BO07185.5prime Sequence
874 bp (747 high quality bases) assembled on 2005-12-03
> BO07185.5prime
GAAGTTATCAGTCGACATGTCGCTATCAAGCCTGCTGCCCACGCCGACGA
ACGCGATCTGGGATCGGGAGGACGAGCGTCGCCTGGTCGCCCGCGGAGCA
CCAAAGATCGGAGCCCTGGTCTCCGCCAAAATCGCTGCTCCGCCGTACGG
ACAGCGTAAGGATTGGGTACCACATACGGATGCGGACTTTGGCGATGGCG
GCGCCTTCCCGGAGATCCATGTGGCGCAATATCCACTAGGTCTGGGAGCA
CCAGGAAATGTTGGCAAGAAGTCGGATGCTCTGGCCGTTCGCCTGGACGA
CAAGGGAAAGGTTAAATACGATGCCATAGCACGCCAAGGACATGGCAAGG
ACAAGATTGTGTACTCGTCCATTTCGCAACTGCTGCCGGCGGAGGTGTTG
GCCGAAGATGCGGATGAACTACAGCGCCCGGACGAGGAAACGGTGATGGA
GACGACGGAGGAGACGCGCCTGGCGCTGGAGAAGCTGACCAACCAGAAGA
TCACCTCAGCGCTGCCCGTGCGCCATGCCCAGAAGGCGGGTCCCGCCCAG
TACATTCGGTACACGCCCTCGCAGCAGGGCGATACCTTCAATTCGGGCGC
CAAGCAGCGTGTCATCCGGATGGTGGAGGCGCAGCTCGATCCGATGGAGC
CGCCCAAGTTCCGCATTAACAAAAAGATTCCACGAGGTCCACCATCGCCG
CCGGCACCTGTCCTCCACTCACCATCGCGCAAGGTGACGGTCAAGGAGCA
AAAGGAGTGGAAGATCCCGCCCTGCATATCGAACTGGAAGAACGCCAAAG
GTTACACCATTCCACTGGACAAGCGTCTGGCAGCCGATGGACGCGGTCTG
CAGCAGGTGCACATCAACGAGAAG
BO07185.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:57:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8264-PA | 1644 | Bx42-RA | 1..858 | 17..874 | 4290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:19:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bx42-RB | 2403 | CG8264-RB | 158..1015 | 17..874 | 4290 | 100 | Plus |
Bx42-RA | 1955 | CG8264-RA | 158..1015 | 17..874 | 4290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:19:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9105395..9105959 | 802..238 | 2825 | 100 | Minus |
X | 23542271 | X | 9106223..9106447 | 241..17 | 1125 | 100 | Minus |
X | 23542271 | X | 9105258..9105333 | 874..799 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 20:19:15 has no hits.
BO07185.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:11:48 Download gff for
BO07185.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx42-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:51:42 Download gff for
BO07185.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8264-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:24:25 Download gff for
BO07185.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx42-RA | 154..1015 | 10..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:48:20 Download gff for
BO07185.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx42-RA | 154..1015 | 10..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:48:20 Download gff for
BO07185.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9105258..9105331 | 801..874 | 100 | <- | Minus |
X | 9105397..9105957 | 240..800 | 100 | <- | Minus |
X | 9106225..9106451 | 10..239 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:24:25 Download gff for
BO07185.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8999291..8999364 | 801..874 | 100 | <- | Minus |
arm_X | 8999430..8999990 | 240..800 | 100 | <- | Minus |
arm_X | 9000258..9000484 | 10..239 | 98 | | Minus |
BO07185.complete Sequence
1675 bp (1675 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630698
> BO07185.complete
GAAGTTATCAGTCGACATGTCGCTATCAAGCCTGCTGCCCACGCCGACGA
ACGCGATCTGGGATCGGGAGGACGAGCGTCGCCTGGTCGCCCGCGGAGCA
CCAAAGATCGGAGCCCTGGTCTCCGCCAAAATCGCTGCTCCGCCGTACGG
ACAGCGTAAGGATTGGGTACCACATACGGATGCGGACTTTGGCGATGGCG
GCGCCTTCCCGGAGATCCATGTGGCGCAATATCCACTAGGTCTGGGAGCA
CCAGGAAATGTTGGCAAGAAGTCGGATGCTCTGGCCGTTCGCCTGGACGA
CAAGGGAAAGGTTAAATACGATGCCATAGCACGCCAAGGACATGGCAAGG
ACAAGATTGTGTACTCGTCCATTTCGCAACTGCTGCCGGCGGAGGTGTTG
GCCGAAGATGCGGATGAACTACAGCGCCCGGACGAGGAAACGGTGATGGA
GACGACGGAGGAGACGCGCCTGGCGCTGGAGAAGCTGACCAACCAGAAGA
TCACCTCAGCGCTGCCCGTGCGCCATGCCCAGAAGGCGGGTCCCGCCCAG
TACATTCGGTACACGCCCTCGCAGCAGGGCGATACCTTCAATTCGGGCGC
CAAGCAGCGTGTCATCCGGATGGTGGAGGCGCAGCTCGATCCGATGGAGC
CGCCCAAGTTCCGCATTAACAAAAAGATTCCACGAGGTCCACCATCGCCG
CCGGCACCTGTCCTCCACTCACCATCGCGCAAGGTGACGGTCAAGGAGCA
AAAGGAGTGGAAGATCCCGCCCTGCATATCGAACTGGAAGAACGCCAAAG
GTTACACCATTCCACTGGACAAGCGTCTGGCAGCCGATGGACGCGGTCTG
CAGCAGGTGCACATCAACGAGAAGTTCGCCAAGATGGCCGAGGCGCTGTA
CATAGCCGATCGCAAGGCGCGCGAGGCGGTGGAGGCACGCTCCCAGCTGG
AAAAGAAGCTGGCCCAAAAGGAGAAGGAGAAGAAGGAGGATATGCTGCGT
ATGATGGCGCAGCGGGCTCGCGAAGAGCGAGCGGGACTACGCAATCCGGA
GGCAGCCGAGCCATCTGGTTCCGGAGCTACAGGATCCGAGGTGCGTGAAC
GCAACGACTTGCGGGCAGAGCGGCAAAGGGAGCGCCAGCGGGATAGAAAC
CTGCAGCGGGCGGCTCCCGAAAAGCGATCGAAACTGCAGAAGGAGAGGGA
GCGTGACATTTCTGAGCAAATCGCTTTGGGTCTGCCCGCCAAGAGTGCCG
GCAACGGTGAAACGCTCTTCGATCAGCGTCTATTCAACACCACCAAGGGC
ATGGACTCCGGTTACGGTGATGACGAAGCGTACAATGTGTACGACAAGCC
GTGGCGCGATTCCAATACACTGGGCGCTCACATCTACCGACCCAGCAAGC
AGGCGGATAGCGATAACTACGGCGGTGATCTGGATGCCATTGTAAATACC
AAGCGTTTCGTGCCAGACAAGCAGTTCTCCGGTGCCTCCAAGGAGGCGGC
CGCTGGCCAGAGGAGTGGACCCGTTGAGTTCGAGAAGGAGGAGGATCCCT
TCGGTCTCGATCAGTTCTTGAACATGGCCAAAAAGGCGCCCAAGCGTGCC
GAGGAGAAGAACAACGAGCGCAGCAGCCATTCGGATCGCAAGCGCAGCAA
GCGCGATGCAAGCTTTCTAGACCAT
BO07185.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:36:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bx42-RB | 1644 | CG8264-PB | 1..1641 | 17..1657 | 8205 | 100 | Plus |
Bx42-RA | 1644 | CG8264-PA | 1..1641 | 17..1657 | 8205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:36:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bx42-RB | 2403 | CG8264-RB | 158..1798 | 17..1657 | 8205 | 100 | Plus |
Bx42-RA | 1955 | CG8264-RA | 158..1798 | 17..1657 | 8205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:36:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9104475..9105333 | 1657..799 | 4295 | 100 | Minus |
X | 23542271 | X | 9105395..9105959 | 802..238 | 2825 | 100 | Minus |
X | 23542271 | X | 9106223..9106447 | 241..17 | 1125 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:36:13 has no hits.
BO07185.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:48 Download gff for
BO07185.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx42-RA | 1..1644 | 17..1658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:40:07 Download gff for
BO07185.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx42-RA | 152..1796 | 10..1657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:27:51 Download gff for
BO07185.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx42-RA | 158..1798 | 17..1659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:49 Download gff for
BO07185.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx42-RA | 152..1796 | 10..1657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:43 Download gff for
BO07185.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx42-RA | 158..1798 | 17..1659 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:43 Download gff for
BO07185.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9104473..9105331 | 801..1659 | 99 | <- | Minus |
X | 9105397..9105957 | 240..800 | 100 | <- | Minus |
X | 9106225..9106447 | 17..239 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:27:51 Download gff for
BO07185.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9000258..9000480 | 17..239 | 100 | | Minus |
arm_X | 8998506..8999364 | 801..1659 | 99 | <- | Minus |
arm_X | 8999430..8999990 | 240..800 | 100 | <- | Minus |
BO07185.pep Sequence
Translation from 16 to 1675
> BO07185.pep
MSLSSLLPTPTNAIWDREDERRLVARGAPKIGALVSAKIAAPPYGQRKDW
VPHTDADFGDGGAFPEIHVAQYPLGLGAPGNVGKKSDALAVRLDDKGKVK
YDAIARQGHGKDKIVYSSISQLLPAEVLAEDADELQRPDEETVMETTEET
RLALEKLTNQKITSALPVRHAQKAGPAQYIRYTPSQQGDTFNSGAKQRVI
RMVEAQLDPMEPPKFRINKKIPRGPPSPPAPVLHSPSRKVTVKEQKEWKI
PPCISNWKNAKGYTIPLDKRLAADGRGLQQVHINEKFAKMAEALYIADRK
AREAVEARSQLEKKLAQKEKEKKEDMLRMMAQRAREERAGLRNPEAAEPS
GSGATGSEVRERNDLRAERQRERQRDRNLQRAAPEKRSKLQKERERDISE
QIALGLPAKSAGNGETLFDQRLFNTTKGMDSGYGDDEAYNVYDKPWRDSN
TLGAHIYRPSKQADSDNYGGDLDAIVNTKRFVPDKQFSGASKEAAAGQRS
GPVEFEKEEDPFGLDQFLNMAKKAPKRAEEKNNERSSHSDRKRSKRDASF
LDH
BO07185.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:44:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bx42-PB | 547 | CG8264-PB | 1..547 | 1..547 | 2825 | 100 | Plus |
Bx42-PA | 547 | CG8264-PA | 1..547 | 1..547 | 2825 | 100 | Plus |