Clone BO07192 Report

Search the DGRC for BO07192

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:71
Well:92
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO07192.pep: validated full length
Sequenced Size:1477

Clone Sequence Records

BO07192.3prime Sequence

806 bp (805 high quality bases) assembled on 2005-12-04

> BO07192.3prime
ATGGTCTAGAAAGCTTGCAAATGTAACGTCTTGTATCTCGTTTTGAGCCT
GAGCCTGCGCCTGCATCTTGCACGTGTGCGTCCGATGTGGCGCTGCGGAC
CCAAAGTTGTGCTGCTGCTGGTGTTGCTCCACGCACTCGGCAGGAGCTTT
CGGTAGCGGCAAGGGTCTAATTGAGATTTGCGAGAGATGCTGCGATTGAT
GTATTTGGAAGCGCCTCTTGTAGTATAATGTTGACATTTCTTTTGGGTCA
ATATTCACTAGAAATGGCTCTAGATTCCGACTGTGCTCCTTAAAGATGTC
CTCCATGTGCAGCATACAATCTCGCACCTGAGCTTGCTCCACGCTGGTTA
GATCGGTCATCAGACTCAAAAGGAAGTGTAGATTGTGTCCCGATCGCAGA
TGCCACTTTAGGCCATTCATTGACGCAGCTATGCTCGATGCAGCTATGGT
GCTGGCCGAGAACTTGGCAAACTTATGTTCTTTTGCTGCCAACGATATAA
ATGCCTGAGCATGTCCCCGCACTTTGCCAATGTTTATGTCCGGAAAGTTT
TTGCTGCCTATCGGCAGGCGCATCATCAGAAGCTCAAGGAAGTCCAAGGG
AGTCACAGATGAGAGGTCCCAGCCCAAGCGACTTAGCACATACAGCTCCC
ATTTAATCAAATCATCCTTGTAGATGCTGTTGTCCGTGTAAACAACGAGT
AGATCCACCGAAAGAGCACGACAGCTGGGTTCACGGAGCTTTGAAGCCAG
TAAGAGGCAAGCTGCGGCCAAAATTTGTAGCTGGGTCTTGCGTACTGATT
TGCTCG

BO07192.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:57:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG9096-PC 1446 CycD-RC 656..1443 806..19 3940 100 Minus
CG9096-PB 1446 CycD-RB 656..1443 806..19 3940 100 Minus
CG9096-PA 1446 CycD-RA 656..1443 806..19 3940 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:58:56
Subject Length Description Subject Range Query Range Score Percent Strand
CycD-RF 2453 CG9096-RF 1211..1998 806..19 3940 100 Minus
CycD-RE 2256 CG9096-RE 1014..1801 806..19 3940 100 Minus
CycD-RD 2145 CG9096-RD 903..1690 806..19 3940 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15907277..15907591 19..333 1575 100 Plus
X 23542271 X 15907859..15908033 480..654 875 100 Plus
X 23542271 X 15908097..15908248 655..806 760 100 Plus
X 23542271 X 15907653..15907802 333..482 750 100 Plus
Blast to na_te.dros performed on 2015-02-12 15:58:55 has no hits.

BO07192.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:11:56 Download gff for BO07192.3prime
Subject Subject Range Query Range Percent Splice Strand
CycD-PB 656..1446 16..806 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:51:55 Download gff for BO07192.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9096-PA 656..1446 16..806 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:16:15 Download gff for BO07192.3prime
Subject Subject Range Query Range Percent Splice Strand
CycD-RD 903..1690 19..806 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:32:23 Download gff for BO07192.3prime
Subject Subject Range Query Range Percent Splice Strand
CycD-RD 903..1690 19..806 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:32:23 Download gff for BO07192.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15907277..15907591 19..333 100 <- Plus
X 15907654..15907799 334..479 100 <- Plus
X 15907859..15908033 480..654 100 <- Plus
X 15908097..15908248 655..806 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:16:15 Download gff for BO07192.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15801310..15801624 19..333 100 <- Plus
arm_X 15801687..15801832 334..479 100 <- Plus
arm_X 15801892..15802066 480..654 100 <- Plus
arm_X 15802130..15802281 655..806 100   Plus

BO07192.5prime Sequence

916 bp (789 high quality bases) assembled on 2005-12-03

> BO07192.5prime
GAAGTTATCAGTCGACATGGCCGATATAATGGATCTTTTATGCTCGGAAA
TCATAGTCTACGAATCAGATCCATCATTGTATCGTTTGAACAAACGACAG
CAGCAAATGTCCTCACCGGCGATCATTCGGGATCAATCATCGATATGTTC
ATCCTTGGGGGACGCGGAATCCGATTCCCATCCGGATGCCCAGAACAATG
CCGTAGTGTGCAATATGAAGGAGCTGGTGTATATATACGCGTCCGTGGAC
TCGGCTGCGAAAAATCCAGAACAATTGGAGCCGCCTCCGCCACCTCCACC
ACCGCCGCCACCACCACCGACAGCGACCCAATCAATCCAAAGTTATCCGC
GTTACATCAGCCAGGAGCCACCGACGTCACATTGCCAACGACTCGACGAA
CGCCTGACCACAACAGCCGATCCACCCGCAACCGACAACGTGAACACTGC
CATCGGGGATCCCACATTGTATTCGGATCGGTGTCTGGAGAATTTCCTCA
AGGTCGAGGAGAAGCACCACAAAATTCCCGACACGTACTTTAGCATCCAG
AAGGATATTACGCCACCGATGCGCAAAATTGTCGCCGAATGGATGATGGA
AGTGTGTGCCGAGGAAAATTGCCAGGAAGAGGTCGTATTACTGGCATTAA
ATTACATGGATCGATTTCTTTCGAGCAAATCAGTACGCAAGACCCAGCTA
CAAATTTTGGCCGCAGCTTGCCTCTTACTGGCTTCAAAGCTCCGTGAACC
CAGCTGTCGTGCTCTTTCGGTGGATCTACTCGTTGTTTACACGGACAACA
GCATCTACAAGGATGATTTGATTAAATGGGAGCTGTATGTGCTAAGTCGC
TTGGGCTGGGACCTCTCATCTGTGACTCCCTTGGACTTCCTTGAGCTTCT
GATGATGCGCCTGGCG

BO07192.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG9096-PC 1446 CycD-RC 1..897 17..913 4485 100 Plus
CG9096-PB 1446 CycD-RB 1..897 17..913 4485 100 Plus
CG9096-PA 1446 CycD-RA 1..897 17..913 4485 100 Plus
CG8127-PB 4239 Eip75B-RB 811..843 287..319 140 96.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:57:17
Subject Length Description Subject Range Query Range Score Percent Strand
CycD-RF 2453 CG9096-RF 556..1452 17..913 4485 100 Plus
CycD-RE 2256 CG9096-RE 359..1255 17..913 4485 100 Plus
CycD-RD 2145 CG9096-RD 248..1144 17..913 4485 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15908534..15909121 604..17 2940 100 Minus
X 23542271 X 15908097..15908318 823..602 1110 100 Minus
X 23542271 X 15907944..15908033 913..824 450 100 Minus
Blast to na_te.dros performed 2015-02-10 16:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 871..994 269..391 122 56.5 Plus

BO07192.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:11:57 Download gff for BO07192.5prime
Subject Subject Range Query Range Percent Splice Strand
CycD-PB 1..900 17..916 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:51:56 Download gff for BO07192.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9096-PA 1..900 17..916 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:05:08 Download gff for BO07192.5prime
Subject Subject Range Query Range Percent Splice Strand
CycD-RD 245..1147 13..916 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:12 Download gff for BO07192.5prime
Subject Subject Range Query Range Percent Splice Strand
CycD-RD 245..1147 13..916 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:12 Download gff for BO07192.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15908097..15908318 602..823 100 <- Minus
X 15907941..15908033 824..916 98 <- Minus
X 15908537..15909124 13..601 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:05:08 Download gff for BO07192.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15801974..15802066 824..916 98 <- Minus
arm_X 15802130..15802351 602..823 100 <- Minus
arm_X 15802570..15803157 13..601 99   Minus

BO07192.complete Sequence

1477 bp (1477 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630699

> BO07192.complete
GAAGTTATCAGTCGACATGGCCGATATAATGGATCTTTTATGCTCGGAAA
TCATAGTCTACGAATCAGATCCATCATTGTATCGTTTGAACAAACGACAG
CAGCAAATGTCCTCACCGGCGATCATTCGGGATCAATCATCGATATGTTC
ATCCTTGGGGGACGCGGAATCCGATTCCCATCCGGATGCCCAGAACAATG
CCGTAGTGTGCAATATGAAGGAGCTGGTGTATATATACGCGTCCGTGGAC
TCGGCTGCGAAAAATCCAGAACAATTGGAGCCGCCTCCGCCACCTCCACC
ACCGCCGCCACCACCACCGACAGCGACCCAATCAATCCAAAGTTATCCGC
GTTACATCAGCCAGGAGCCACCGACGTCACATTGCCAACGACTCGACGAA
CGCCTGACCACAACAGCCGATCCACCCGCAACCGACAACGTGAACACTGC
CATCGGGGATCCCACATTGTATTCGGATCGGTGTCTGGAGAATTTCCTCA
AGGTCGAGGAGAAGCACCACAAAATTCCCGACACGTACTTTAGCATCCAG
AAGGATATTACGCCACCGATGCGCAAAATTGTCGCCGAATGGATGATGGA
AGTGTGTGCCGAGGAAAATTGCCAGGAAGAGGTCGTATTACTGGCATTAA
ATTACATGGATCGATTTCTTTCGAGCAAATCAGTACGCAAGACCCAGCTA
CAAATTTTGGCCGCAGCTTGCCTCTTACTGGCTTCAAAGCTCCGTGAACC
CAGCTGTCGTGCTCTTTCGGTGGATCTACTCGTTGTTTACACGGACAACA
GCATCTACAAGGATGATTTGATTAAATGGGAGCTGTATGTGCTAAGTCGC
TTGGGCTGGGACCTCTCATCTGTGACTCCCTTGGACTTCCTTGAGCTTCT
GATGATGCGCCTGCCGATAGGCAGCAAAAACTTTCCGGACATAAACATTG
GCAAAGTGCGGGGACATGCTCAGGCATTTATATCGTTGGCAGCAAAAGAA
CATAAGTTTGCCAAGTTCTCGGCCAGCACCATAGCTGCATCGAGCATAGC
TGCGTCAATGAATGGCCTAAAGTGGCATCTGCGATCGGGACACAATCTAC
ACTTCCTTTTGAGTCTGATGACCGATCTAACCAGCGTGGAGCAAGCTCAG
GTGCGAGATTGTATGCTGCACATGGAGGACATCTTTAAGGAGCACAGTCG
GAATCTAGAGCCATTTCTAGTGAATATTGACCCAAAAGAAATGTCAACAT
TATACTACAAGAGGCGCTTCCAAATACATCAATCGCAGCATCTCTCGCAA
ATCTCAATTAGACCCTTGCCGCTACCGAAAGCTCCTGCCGAGTGCGTGGA
GCAACACCAGCAGCAGCACAACTTTGGGTCCGCAGCGCCACATCGGACGC
ACACGTGCAAGATGCAGGCGCAGGCTCAGGCTCAAAACGAGATACAAGAC
GTTACATTTGCAAGCTTTCTAGACCAT

BO07192.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
CycD-RF 1434 CG9096-PF 1..1431 29..1459 7155 100 Plus
CycD-RE 1434 CG9096-PE 1..1431 29..1459 7155 100 Plus
CycD-RD 1434 CG9096-PD 1..1431 29..1459 7155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
CycD-RF 2453 CG9096-RF 556..1998 17..1459 7215 100 Plus
CycD-RE 2256 CG9096-RE 359..1801 17..1459 7215 100 Plus
CycD-RD 2145 CG9096-RD 248..1690 17..1459 7215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15908534..15909121 604..17 2940 100 Minus
X 23542271 X 15907277..15907591 1459..1145 1575 100 Minus
X 23542271 X 15908097..15908318 823..602 1110 100 Minus
X 23542271 X 15907859..15908033 998..824 875 100 Minus
X 23542271 X 15907653..15907802 1145..996 750 100 Minus
Blast to na_te.dros performed 2014-11-27 06:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 871..994 269..391 122 56.5 Plus

BO07192.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:50 Download gff for BO07192.complete
Subject Subject Range Query Range Percent Splice Strand
CycD-RA 1..1446 17..1462 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:40:11 Download gff for BO07192.complete
Subject Subject Range Query Range Percent Splice Strand
CycD-RF 552..1997 13..1459 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:01 Download gff for BO07192.complete
Subject Subject Range Query Range Percent Splice Strand
CycD-RD 248..1690 17..1461 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:50 Download gff for BO07192.complete
Subject Subject Range Query Range Percent Splice Strand
CycD-RA 205..1650 13..1459 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:45 Download gff for BO07192.complete
Subject Subject Range Query Range Percent Splice Strand
CycD-RD 248..1690 17..1461 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:45 Download gff for BO07192.complete
Subject Subject Range Query Range Percent Splice Strand
X 15907274..15907591 1145..1461 99 <- Minus
X 15907654..15907799 999..1144 100 <- Minus
X 15907859..15908033 824..998 100 <- Minus
X 15908097..15908318 602..823 100 <- Minus
X 15908537..15909121 17..601 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:01 Download gff for BO07192.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15801307..15801624 1145..1461 99 <- Minus
arm_X 15801687..15801832 999..1144 100 <- Minus
arm_X 15801892..15802066 824..998 100 <- Minus
arm_X 15802130..15802351 602..823 100 <- Minus
arm_X 15802570..15803154 17..601 100   Minus

BO07192.pep Sequence

Translation from 16 to 1477

> BO07192.pep
MADIMDLLCSEIIVYESDPSLYRLNKRQQQMSSPAIIRDQSSICSSLGDA
ESDSHPDAQNNAVVCNMKELVYIYASVDSAAKNPEQLEPPPPPPPPPPPP
PTATQSIQSYPRYISQEPPTSHCQRLDERLTTTADPPATDNVNTAIGDPT
LYSDRCLENFLKVEEKHHKIPDTYFSIQKDITPPMRKIVAEWMMEVCAEE
NCQEEVVLLALNYMDRFLSSKSVRKTQLQILAAACLLLASKLREPSCRAL
SVDLLVVYTDNSIYKDDLIKWELYVLSRLGWDLSSVTPLDFLELLMMRLP
IGSKNFPDINIGKVRGHAQAFISLAAKEHKFAKFSASTIAASSIAASMNG
LKWHLRSGHNLHFLLSLMTDLTSVEQAQVRDCMLHMEDIFKEHSRNLEPF
LVNIDPKEMSTLYYKRRFQIHQSQHLSQISIRPLPLPKAPAECVEQHQQQ
HNFGSAAPHRTHTCKMQAQAQAQNEIQDVTFASFLDH

BO07192.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:44:45
Subject Length Description Subject Range Query Range Score Percent Strand
CycD-PF 477 CG9096-PF 1..477 5..481 2496 100 Plus
CycD-PE 477 CG9096-PE 1..477 5..481 2496 100 Plus
CycD-PD 477 CG9096-PD 1..477 5..481 2496 100 Plus
CycA-PC 490 CG5940-PC 202..339 152..292 187 34 Plus
CycA-PA 491 CG5940-PA 203..340 152..292 187 34 Plus