Clone Sequence Records
BO07192.3prime Sequence
806 bp (805 high quality bases) assembled on 2005-12-04
> BO07192.3prime
ATGGTCTAGAAAGCTTGCAAATGTAACGTCTTGTATCTCGTTTTGAGCCT
GAGCCTGCGCCTGCATCTTGCACGTGTGCGTCCGATGTGGCGCTGCGGAC
CCAAAGTTGTGCTGCTGCTGGTGTTGCTCCACGCACTCGGCAGGAGCTTT
CGGTAGCGGCAAGGGTCTAATTGAGATTTGCGAGAGATGCTGCGATTGAT
GTATTTGGAAGCGCCTCTTGTAGTATAATGTTGACATTTCTTTTGGGTCA
ATATTCACTAGAAATGGCTCTAGATTCCGACTGTGCTCCTTAAAGATGTC
CTCCATGTGCAGCATACAATCTCGCACCTGAGCTTGCTCCACGCTGGTTA
GATCGGTCATCAGACTCAAAAGGAAGTGTAGATTGTGTCCCGATCGCAGA
TGCCACTTTAGGCCATTCATTGACGCAGCTATGCTCGATGCAGCTATGGT
GCTGGCCGAGAACTTGGCAAACTTATGTTCTTTTGCTGCCAACGATATAA
ATGCCTGAGCATGTCCCCGCACTTTGCCAATGTTTATGTCCGGAAAGTTT
TTGCTGCCTATCGGCAGGCGCATCATCAGAAGCTCAAGGAAGTCCAAGGG
AGTCACAGATGAGAGGTCCCAGCCCAAGCGACTTAGCACATACAGCTCCC
ATTTAATCAAATCATCCTTGTAGATGCTGTTGTCCGTGTAAACAACGAGT
AGATCCACCGAAAGAGCACGACAGCTGGGTTCACGGAGCTTTGAAGCCAG
TAAGAGGCAAGCTGCGGCCAAAATTTGTAGCTGGGTCTTGCGTACTGATT
TGCTCG
BO07192.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:57:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9096-PC | 1446 | CycD-RC | 656..1443 | 806..19 | 3940 | 100 | Minus |
CG9096-PB | 1446 | CycD-RB | 656..1443 | 806..19 | 3940 | 100 | Minus |
CG9096-PA | 1446 | CycD-RA | 656..1443 | 806..19 | 3940 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:58:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycD-RF | 2453 | CG9096-RF | 1211..1998 | 806..19 | 3940 | 100 | Minus |
CycD-RE | 2256 | CG9096-RE | 1014..1801 | 806..19 | 3940 | 100 | Minus |
CycD-RD | 2145 | CG9096-RD | 903..1690 | 806..19 | 3940 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:58:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15907277..15907591 | 19..333 | 1575 | 100 | Plus |
X | 23542271 | X | 15907859..15908033 | 480..654 | 875 | 100 | Plus |
X | 23542271 | X | 15908097..15908248 | 655..806 | 760 | 100 | Plus |
X | 23542271 | X | 15907653..15907802 | 333..482 | 750 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 15:58:55 has no hits.
BO07192.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:11:56 Download gff for
BO07192.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycD-PB | 656..1446 | 16..806 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:51:55 Download gff for
BO07192.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9096-PA | 656..1446 | 16..806 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:16:15 Download gff for
BO07192.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycD-RD | 903..1690 | 19..806 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:32:23 Download gff for
BO07192.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycD-RD | 903..1690 | 19..806 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:32:23 Download gff for
BO07192.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15907277..15907591 | 19..333 | 100 | <- | Plus |
X | 15907654..15907799 | 334..479 | 100 | <- | Plus |
X | 15907859..15908033 | 480..654 | 100 | <- | Plus |
X | 15908097..15908248 | 655..806 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:16:15 Download gff for
BO07192.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15801310..15801624 | 19..333 | 100 | <- | Plus |
arm_X | 15801687..15801832 | 334..479 | 100 | <- | Plus |
arm_X | 15801892..15802066 | 480..654 | 100 | <- | Plus |
arm_X | 15802130..15802281 | 655..806 | 100 | | Plus |
BO07192.5prime Sequence
916 bp (789 high quality bases) assembled on 2005-12-03
> BO07192.5prime
GAAGTTATCAGTCGACATGGCCGATATAATGGATCTTTTATGCTCGGAAA
TCATAGTCTACGAATCAGATCCATCATTGTATCGTTTGAACAAACGACAG
CAGCAAATGTCCTCACCGGCGATCATTCGGGATCAATCATCGATATGTTC
ATCCTTGGGGGACGCGGAATCCGATTCCCATCCGGATGCCCAGAACAATG
CCGTAGTGTGCAATATGAAGGAGCTGGTGTATATATACGCGTCCGTGGAC
TCGGCTGCGAAAAATCCAGAACAATTGGAGCCGCCTCCGCCACCTCCACC
ACCGCCGCCACCACCACCGACAGCGACCCAATCAATCCAAAGTTATCCGC
GTTACATCAGCCAGGAGCCACCGACGTCACATTGCCAACGACTCGACGAA
CGCCTGACCACAACAGCCGATCCACCCGCAACCGACAACGTGAACACTGC
CATCGGGGATCCCACATTGTATTCGGATCGGTGTCTGGAGAATTTCCTCA
AGGTCGAGGAGAAGCACCACAAAATTCCCGACACGTACTTTAGCATCCAG
AAGGATATTACGCCACCGATGCGCAAAATTGTCGCCGAATGGATGATGGA
AGTGTGTGCCGAGGAAAATTGCCAGGAAGAGGTCGTATTACTGGCATTAA
ATTACATGGATCGATTTCTTTCGAGCAAATCAGTACGCAAGACCCAGCTA
CAAATTTTGGCCGCAGCTTGCCTCTTACTGGCTTCAAAGCTCCGTGAACC
CAGCTGTCGTGCTCTTTCGGTGGATCTACTCGTTGTTTACACGGACAACA
GCATCTACAAGGATGATTTGATTAAATGGGAGCTGTATGTGCTAAGTCGC
TTGGGCTGGGACCTCTCATCTGTGACTCCCTTGGACTTCCTTGAGCTTCT
GATGATGCGCCTGGCG
BO07192.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:57:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9096-PC | 1446 | CycD-RC | 1..897 | 17..913 | 4485 | 100 | Plus |
CG9096-PB | 1446 | CycD-RB | 1..897 | 17..913 | 4485 | 100 | Plus |
CG9096-PA | 1446 | CycD-RA | 1..897 | 17..913 | 4485 | 100 | Plus |
CG8127-PB | 4239 | Eip75B-RB | 811..843 | 287..319 | 140 | 96.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:57:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycD-RF | 2453 | CG9096-RF | 556..1452 | 17..913 | 4485 | 100 | Plus |
CycD-RE | 2256 | CG9096-RE | 359..1255 | 17..913 | 4485 | 100 | Plus |
CycD-RD | 2145 | CG9096-RD | 248..1144 | 17..913 | 4485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:57:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15908534..15909121 | 604..17 | 2940 | 100 | Minus |
X | 23542271 | X | 15908097..15908318 | 823..602 | 1110 | 100 | Minus |
X | 23542271 | X | 15907944..15908033 | 913..824 | 450 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 16:57:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 871..994 | 269..391 | 122 | 56.5 | Plus |
BO07192.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:11:57 Download gff for
BO07192.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycD-PB | 1..900 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:51:56 Download gff for
BO07192.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9096-PA | 1..900 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:05:08 Download gff for
BO07192.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycD-RD | 245..1147 | 13..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:12 Download gff for
BO07192.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycD-RD | 245..1147 | 13..916 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:12 Download gff for
BO07192.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15908097..15908318 | 602..823 | 100 | <- | Minus |
X | 15907941..15908033 | 824..916 | 98 | <- | Minus |
X | 15908537..15909124 | 13..601 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:05:08 Download gff for
BO07192.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15801974..15802066 | 824..916 | 98 | <- | Minus |
arm_X | 15802130..15802351 | 602..823 | 100 | <- | Minus |
arm_X | 15802570..15803157 | 13..601 | 99 | | Minus |
BO07192.complete Sequence
1477 bp (1477 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630699
> BO07192.complete
GAAGTTATCAGTCGACATGGCCGATATAATGGATCTTTTATGCTCGGAAA
TCATAGTCTACGAATCAGATCCATCATTGTATCGTTTGAACAAACGACAG
CAGCAAATGTCCTCACCGGCGATCATTCGGGATCAATCATCGATATGTTC
ATCCTTGGGGGACGCGGAATCCGATTCCCATCCGGATGCCCAGAACAATG
CCGTAGTGTGCAATATGAAGGAGCTGGTGTATATATACGCGTCCGTGGAC
TCGGCTGCGAAAAATCCAGAACAATTGGAGCCGCCTCCGCCACCTCCACC
ACCGCCGCCACCACCACCGACAGCGACCCAATCAATCCAAAGTTATCCGC
GTTACATCAGCCAGGAGCCACCGACGTCACATTGCCAACGACTCGACGAA
CGCCTGACCACAACAGCCGATCCACCCGCAACCGACAACGTGAACACTGC
CATCGGGGATCCCACATTGTATTCGGATCGGTGTCTGGAGAATTTCCTCA
AGGTCGAGGAGAAGCACCACAAAATTCCCGACACGTACTTTAGCATCCAG
AAGGATATTACGCCACCGATGCGCAAAATTGTCGCCGAATGGATGATGGA
AGTGTGTGCCGAGGAAAATTGCCAGGAAGAGGTCGTATTACTGGCATTAA
ATTACATGGATCGATTTCTTTCGAGCAAATCAGTACGCAAGACCCAGCTA
CAAATTTTGGCCGCAGCTTGCCTCTTACTGGCTTCAAAGCTCCGTGAACC
CAGCTGTCGTGCTCTTTCGGTGGATCTACTCGTTGTTTACACGGACAACA
GCATCTACAAGGATGATTTGATTAAATGGGAGCTGTATGTGCTAAGTCGC
TTGGGCTGGGACCTCTCATCTGTGACTCCCTTGGACTTCCTTGAGCTTCT
GATGATGCGCCTGCCGATAGGCAGCAAAAACTTTCCGGACATAAACATTG
GCAAAGTGCGGGGACATGCTCAGGCATTTATATCGTTGGCAGCAAAAGAA
CATAAGTTTGCCAAGTTCTCGGCCAGCACCATAGCTGCATCGAGCATAGC
TGCGTCAATGAATGGCCTAAAGTGGCATCTGCGATCGGGACACAATCTAC
ACTTCCTTTTGAGTCTGATGACCGATCTAACCAGCGTGGAGCAAGCTCAG
GTGCGAGATTGTATGCTGCACATGGAGGACATCTTTAAGGAGCACAGTCG
GAATCTAGAGCCATTTCTAGTGAATATTGACCCAAAAGAAATGTCAACAT
TATACTACAAGAGGCGCTTCCAAATACATCAATCGCAGCATCTCTCGCAA
ATCTCAATTAGACCCTTGCCGCTACCGAAAGCTCCTGCCGAGTGCGTGGA
GCAACACCAGCAGCAGCACAACTTTGGGTCCGCAGCGCCACATCGGACGC
ACACGTGCAAGATGCAGGCGCAGGCTCAGGCTCAAAACGAGATACAAGAC
GTTACATTTGCAAGCTTTCTAGACCAT
BO07192.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:50:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycD-RF | 1434 | CG9096-PF | 1..1431 | 29..1459 | 7155 | 100 | Plus |
CycD-RE | 1434 | CG9096-PE | 1..1431 | 29..1459 | 7155 | 100 | Plus |
CycD-RD | 1434 | CG9096-PD | 1..1431 | 29..1459 | 7155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:50:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycD-RF | 2453 | CG9096-RF | 556..1998 | 17..1459 | 7215 | 100 | Plus |
CycD-RE | 2256 | CG9096-RE | 359..1801 | 17..1459 | 7215 | 100 | Plus |
CycD-RD | 2145 | CG9096-RD | 248..1690 | 17..1459 | 7215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:50:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15908534..15909121 | 604..17 | 2940 | 100 | Minus |
X | 23542271 | X | 15907277..15907591 | 1459..1145 | 1575 | 100 | Minus |
X | 23542271 | X | 15908097..15908318 | 823..602 | 1110 | 100 | Minus |
X | 23542271 | X | 15907859..15908033 | 998..824 | 875 | 100 | Minus |
X | 23542271 | X | 15907653..15907802 | 1145..996 | 750 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 06:50:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 871..994 | 269..391 | 122 | 56.5 | Plus |
BO07192.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:50 Download gff for
BO07192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycD-RA | 1..1446 | 17..1462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:40:11 Download gff for
BO07192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycD-RF | 552..1997 | 13..1459 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:01 Download gff for
BO07192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycD-RD | 248..1690 | 17..1461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:50 Download gff for
BO07192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycD-RA | 205..1650 | 13..1459 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:45 Download gff for
BO07192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycD-RD | 248..1690 | 17..1461 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:45 Download gff for
BO07192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15907274..15907591 | 1145..1461 | 99 | <- | Minus |
X | 15907654..15907799 | 999..1144 | 100 | <- | Minus |
X | 15907859..15908033 | 824..998 | 100 | <- | Minus |
X | 15908097..15908318 | 602..823 | 100 | <- | Minus |
X | 15908537..15909121 | 17..601 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:01 Download gff for
BO07192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15801307..15801624 | 1145..1461 | 99 | <- | Minus |
arm_X | 15801687..15801832 | 999..1144 | 100 | <- | Minus |
arm_X | 15801892..15802066 | 824..998 | 100 | <- | Minus |
arm_X | 15802130..15802351 | 602..823 | 100 | <- | Minus |
arm_X | 15802570..15803154 | 17..601 | 100 | | Minus |
BO07192.pep Sequence
Translation from 16 to 1477
> BO07192.pep
MADIMDLLCSEIIVYESDPSLYRLNKRQQQMSSPAIIRDQSSICSSLGDA
ESDSHPDAQNNAVVCNMKELVYIYASVDSAAKNPEQLEPPPPPPPPPPPP
PTATQSIQSYPRYISQEPPTSHCQRLDERLTTTADPPATDNVNTAIGDPT
LYSDRCLENFLKVEEKHHKIPDTYFSIQKDITPPMRKIVAEWMMEVCAEE
NCQEEVVLLALNYMDRFLSSKSVRKTQLQILAAACLLLASKLREPSCRAL
SVDLLVVYTDNSIYKDDLIKWELYVLSRLGWDLSSVTPLDFLELLMMRLP
IGSKNFPDINIGKVRGHAQAFISLAAKEHKFAKFSASTIAASSIAASMNG
LKWHLRSGHNLHFLLSLMTDLTSVEQAQVRDCMLHMEDIFKEHSRNLEPF
LVNIDPKEMSTLYYKRRFQIHQSQHLSQISIRPLPLPKAPAECVEQHQQQ
HNFGSAAPHRTHTCKMQAQAQAQNEIQDVTFASFLDH
BO07192.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:44:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycD-PF | 477 | CG9096-PF | 1..477 | 5..481 | 2496 | 100 | Plus |
CycD-PE | 477 | CG9096-PE | 1..477 | 5..481 | 2496 | 100 | Plus |
CycD-PD | 477 | CG9096-PD | 1..477 | 5..481 | 2496 | 100 | Plus |
CycA-PC | 490 | CG5940-PC | 202..339 | 152..292 | 187 | 34 | Plus |
CycA-PA | 491 | CG5940-PA | 203..340 | 152..292 | 187 | 34 | Plus |