Clone Sequence Records
BO07193.3prime Sequence
840 bp (800 high quality bases) assembled on 2005-12-04
> BO07193.3prime
ATGGTCTAGAAAGCTTGCGTAATCATCTAGATCGAAGCCATCATTGTCCA
ATTCATCGAGCTGCATACTCTGGAAATCCACCTTGTAGCGTAAGATACCG
CCGATTCCACCGAAACCTCGCACGAACTGACTTCCTTCCTGGGACTTATC
CGTGATAATCTCCAGTGTGGCGCCGAACATTTTGTAGTTGTTTGCCAGCC
ATTCCAGCAGCGGCTGAGACTCAATCAGCTCCATTTCTACCCCGCTCTCC
TTGTCAGTGAAGTGCGACTTGTCCTTTTCCTGCTCGGGCGTCAAATGTAA
TACTGTCGTTGACGTCGAGTTGGCATGATTCTTGAGAACATAACGTTGAA
TATCCAGGTTCTCCCAACAAATGAGAGTCTCTACAGAGCCAAGTTCCAGT
GCCCGCAAAGTGTCCTCCACTCCAAAACAGTATTTGCCAGTATCCTGAGA
AATTTCATCAAAGTAGCGACCAATGAGTTTCTTCTCCTGTATGAATTTAA
CGTTCTGCAATGATTCGGCCGCCAGTTCAATGGCCTGGTTAAAACCGTTT
TCCCCACCATACGACACGTCCACCAGCTTGATGACTTTTGATTGCAAACG
AGGATCGAACATATCAGACTGACTAAGCTCAGTCTTGAAATCCGCACTAC
CAGCCAGGATGAGTCCGGCAATGTTGGGCTTGTCGTTCGTGATGAAGAGC
TGGGTGGCCACCTCGGCGACCTTCCGCACGTAGTTGTGGCGCTTCTCCAT
ACGCAGACGGGCGAAACGAAGGGCGGACTGACCACCACGACCGTGCTTCT
TCGGCAGATCGACGGTGAACTTGTGGAGCACCTCGCGCGT
BO07193.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:57:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5605-PC | 1317 | eRF1-RC | 493..1314 | 840..19 | 4110 | 100 | Minus |
CG5605-PB | 1317 | eRF1-RB | 493..1314 | 840..19 | 4110 | 100 | Minus |
CG5605-PE | 1317 | eRF1-RE | 493..1314 | 840..19 | 4110 | 100 | Minus |
CG5605-PF | 1317 | eRF1-RF | 493..1314 | 840..19 | 4110 | 100 | Minus |
CG5605-PA | 1317 | eRF1-RA | 493..1314 | 840..19 | 4110 | 100 | Minus |
CG5605-PG | 1317 | eRF1-RG | 493..1314 | 840..19 | 4110 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:56:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eRF1-RG | 1739 | CG5605-RG | 677..1498 | 840..19 | 4110 | 100 | Minus |
eRF1-RA | 2321 | CG5605-RA | 1259..2080 | 840..19 | 4110 | 100 | Minus |
eRF1-RF | 1788 | CG5605-RF | 726..1547 | 840..19 | 4110 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:56:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20350789..20351028 | 840..601 | 1200 | 100 | Minus |
3L | 28110227 | 3L | 20351322..20351521 | 446..247 | 1000 | 100 | Minus |
3L | 28110227 | 3L | 20351094..20351250 | 600..444 | 785 | 100 | Minus |
3L | 28110227 | 3L | 20351581..20351733 | 248..96 | 765 | 100 | Minus |
3L | 28110227 | 3L | 20352806..20352886 | 99..19 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 09:56:49 has no hits.
BO07193.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:11:59 Download gff for
BO07193.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eRF1-PG | 493..1317 | 18..840 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:51:58 Download gff for
BO07193.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5605-PG | 493..1317 | 18..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:44:03 Download gff for
BO07193.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eRF1-RF | 726..1547 | 19..840 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:55:43 Download gff for
BO07193.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eRF1-RF | 726..1547 | 19..840 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:55:43 Download gff for
BO07193.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20351583..20351730 | 99..246 | 100 | -> | Minus |
3L | 20352807..20352886 | 19..98 | 100 | | Minus |
3L | 20350789..20351028 | 601..840 | 100 | -> | Minus |
3L | 20351094..20351249 | 445..600 | 100 | -> | Minus |
3L | 20351324..20351521 | 247..444 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:44:03 Download gff for
BO07193.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20343889..20344128 | 601..840 | 100 | -> | Minus |
arm_3L | 20344194..20344349 | 445..600 | 100 | -> | Minus |
arm_3L | 20344424..20344621 | 247..444 | 100 | -> | Minus |
arm_3L | 20344683..20344830 | 99..246 | 100 | -> | Minus |
arm_3L | 20345907..20345986 | 19..98 | 100 | | Minus |
BO07193.5prime Sequence
862 bp (808 high quality bases) assembled on 2005-12-03
> BO07193.5prime
GAAGTTATCAGTCGACATGTCTGGCGAGGAAACGTCTGCCGATCGCAATG
TCGAGATCTGGAAAATCAAGAAGCTCATCAAGAGCCTGGAAATGGCCCGC
GGCAATGGAACCAGCATGATTTCTTTGATTATTCCGCCAAAGGATCAAAT
CTCGCGCGTCAGCAAGATGTTGGCCGATGAGTTTGGAACGGCGTCGAACA
TCAAGTCGCGTGTAAATCGGTTGTCCGTCCTCGGTGCCATTACGTCGGTA
CAGCACAGACTCAAATTATACACCAAAGTGCCTCCCAACGGTTTGGTCAT
CTACTGCGGCACAATAGTCACAGAGGAGGGCAAGGAGAAGAAGGTGAACA
TAGACTTTGAGCCATTCAAGCCCATAAACACGTCGCTCTACCTCTGCGAC
AACAAGTTCCACACGGAGGCCCTCACTGCCCTGCTCGCCGACGACAACAA
ATTTGGATTCATCGTGATGGATGGTAACGGAGCGCTATTCGGTACCCTTC
AGGGCAACACGCGCGAGGTGCTCCACAAGTTCACCGTCGATCTGCCGAAG
AAGCACGGTCGTGGTGGTCAGTCCGCCCTTCGTTTCGCCCGTCTGCGTAT
GGAGAAGCGCCACAACTACGTGCGGAAGGTCGCCGAGGTGGCCACCCAGC
TCTTCATCACGAACGACAAGCCCAACATTGCCGGACTCATCCTGGCTGGT
AGTGCGGATTTCAAGACTGAGCTTAGTCAGTCTGATATGTTCGATCCTCG
TTTGCAATCAAAAGTCATCAAGCTGGTGGACGTGTCGTATGGTGGGGAAA
ACGGTTTTAACCAGGCCATTGAACTGGCGGCCGAATCATTGCAGAACGTT
AAATCATACAGG
BO07193.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:57:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5605-PC | 1317 | eRF1-RC | 1..838 | 17..854 | 4190 | 100 | Plus |
CG5605-PB | 1317 | eRF1-RB | 1..838 | 17..854 | 4190 | 100 | Plus |
CG5605-PE | 1317 | eRF1-RE | 1..838 | 17..854 | 4190 | 100 | Plus |
CG5605-PF | 1317 | eRF1-RF | 1..838 | 17..854 | 4190 | 100 | Plus |
CG5605-PA | 1317 | eRF1-RA | 1..838 | 17..854 | 4190 | 100 | Plus |
CG5605-PG | 1317 | eRF1-RG | 1..838 | 17..854 | 4190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:07:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eRF1-RI | 1873 | CG5605-RI | 211..1057 | 17..862 | 4210 | 99.9 | Plus |
eRF1-RH | 1806 | CG5605-RH | 211..1057 | 17..862 | 4210 | 99.9 | Plus |
eRF1-RG | 1739 | CG5605-RG | 185..1031 | 17..862 | 4210 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:07:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20350557..20351028 | 277..748 | 2360 | 100 | Plus |
3L | 28110227 | 3L | 20350304..20350480 | 102..278 | 885 | 100 | Plus |
3L | 28110227 | 3L | 20351094..20351199 | 749..854 | 530 | 100 | Plus |
3L | 28110227 | 3L | 20349121..20349206 | 17..102 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:07:36 has no hits.
BO07193.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:00 Download gff for
BO07193.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eRF1-PG | 1..847 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:00 Download gff for
BO07193.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5605-PG | 1..847 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:42:25 Download gff for
BO07193.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eRF1-RG | 249..1101 | 10..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:13:47 Download gff for
BO07193.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eRF1-RG | 179..1031 | 10..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:13:47 Download gff for
BO07193.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20349115..20349206 | 10..102 | 96 | -> | Plus |
3L | 20350305..20350480 | 103..278 | 100 | -> | Plus |
3L | 20350559..20351028 | 279..748 | 100 | -> | Plus |
3L | 20351094..20351208 | 749..862 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:42:25 Download gff for
BO07193.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20342215..20342306 | 10..102 | 96 | -> | Plus |
arm_3L | 20343405..20343580 | 103..278 | 100 | -> | Plus |
arm_3L | 20343659..20344128 | 279..748 | 100 | -> | Plus |
arm_3L | 20344194..20344308 | 749..862 | 99 | | Plus |
BO07193.complete Sequence
1348 bp (1348 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630700
> BO07193.complete
GAAGTTATCAGTCGACATGTCTGGCGAGGAAACGTCTGCCGATCGCAATG
TCGAGATCTGGAAAATCAAGAAGCTCATCAAGAGCCTGGAAATGGCCCGC
GGCAATGGAACCAGCATGATTTCTTTGATTATTCCGCCAAAGGATCAAAT
CTCGCGCGTCAGCAAGATGTTGGCCGATGAGTTTGGAACGGCGTCGAACA
TCAAGTCGCGTGTAAATCGGTTGTCCGTCCTCGGTGCCATTACGTCGGTA
CAGCACAGACTCAAATTATACACCAAAGTGCCTCCCAACGGTTTGGTCAT
CTACTGCGGCACAATAGTCACAGAGGAGGGCAAGGAGAAGAAGGTGAACA
TAGACTTTGAGCCATTCAAGCCCATAAACACGTCGCTCTACCTCTGCGAC
AACAAGTTCCACACGGAGGCCCTCACTGCCCTGCTCGCCGACGACAACAA
ATTTGGATTCATCGTGATGGATGGTAACGGAGCGCTATTCGGTACCCTTC
AGGGCAACACGCGCGAGGTGCTCCACAAGTTCACCGTCGATCTGCCGAAG
AAGCACGGTCGTGGTGGTCAGTCCGCCCTTCGTTTCGCCCGTCTGCGTAT
GGAGAAGCGCCACAACTACGTGCGGAAGGTCGCCGAGGTGGCCACCCAGC
TCTTCATCACGAACGACAAGCCCAACATTGCCGGACTCATCCTGGCTGGT
AGTGCGGATTTCAAGACTGAGCTTAGTCAGTCTGATATGTTCGATCCTCG
TTTGCAATCAAAAGTCATCAAGCTGGTGGACGTGTCGTATGGTGGGGAAA
ACGGTTTTAACCAGGCCATTGAACTGGCGGCCGAATCATTGCAGAACGTT
AAATTCATACAGGAGAAGAAACTCATTGGTCGCTACTTTGATGAAATTTC
TCAGGATACTGGCAAATACTGTTTTGGAGTGGAGGACACTTTGCGGGCAC
TGGAACTTGGCTCTGTAGAGACTCTCATTTGTTGGGAGAACCTGGATATT
CAACGTTATGTTCTCAAGAATCATGCCAACTCGACGTCAACGACAGTATT
ACATTTGACGCCCGAGCAGGAAAAGGACAAGTCGCACTTCACTGACAAGG
AGAGCGGGGTAGAAATGGAGCTGATTGAGTCTCAGCCGCTGCTGGAATGG
CTGGCAAACAACTACAAAATGTTCGGCGCCACACTGGAGATTATCACGGA
TAAGTCCCAGGAAGGAAGTCAGTTCGTGCGAGGTTTCGGTGGAATCGGCG
GTATCTTACGCTACAAGGTGGATTTCCAGAGTATGCAGCTCGATGAATTG
GACAATGATGGCTTCGATCTAGATGATTACGCAAGCTTTCTAGACCAT
BO07193.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:17:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eRF1-RG | 1317 | CG5605-PG | 1..1314 | 17..1330 | 6570 | 100 | Plus |
eRF1-RA | 1317 | CG5605-PA | 1..1314 | 17..1330 | 6570 | 100 | Plus |
eRF1-RF | 1317 | CG5605-PF | 1..1314 | 17..1330 | 6570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:17:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eRF1-RG | 1739 | CG5605-RG | 185..1498 | 17..1330 | 6570 | 100 | Plus |
eRF1-RA | 2321 | CG5605-RA | 767..2080 | 17..1330 | 6570 | 100 | Plus |
eRF1-RF | 1788 | CG5605-RF | 234..1547 | 17..1330 | 6570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:17:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20350557..20351028 | 277..748 | 2360 | 100 | Plus |
3L | 28110227 | 3L | 20351322..20351521 | 903..1102 | 1000 | 100 | Plus |
3L | 28110227 | 3L | 20350304..20350480 | 102..278 | 885 | 100 | Plus |
3L | 28110227 | 3L | 20351094..20351250 | 749..905 | 785 | 100 | Plus |
3L | 28110227 | 3L | 20351581..20351733 | 1101..1253 | 765 | 100 | Plus |
3L | 28110227 | 3L | 20349121..20349206 | 17..102 | 430 | 100 | Plus |
3L | 28110227 | 3L | 20352806..20352886 | 1250..1330 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:17:56 has no hits.
BO07193.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:51 Download gff for
BO07193.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eRF1-RE | 1..1317 | 17..1331 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:40:14 Download gff for
BO07193.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eRF1-RE | 443..1762 | 10..1330 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:48 Download gff for
BO07193.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eRF1-RF | 234..1547 | 17..1332 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:51 Download gff for
BO07193.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eRF1-RE | 443..1762 | 10..1330 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:23 Download gff for
BO07193.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eRF1-RF | 234..1547 | 17..1332 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:23 Download gff for
BO07193.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20351094..20351249 | 749..904 | 100 | -> | Plus |
3L | 20351324..20351521 | 905..1102 | 100 | -> | Plus |
3L | 20351583..20351730 | 1103..1250 | 100 | -> | Plus |
3L | 20352807..20352886 | 1251..1332 | 97 | | Plus |
3L | 20349121..20349206 | 17..102 | 100 | -> | Plus |
3L | 20350305..20350480 | 103..278 | 100 | -> | Plus |
3L | 20350559..20351028 | 279..748 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:48 Download gff for
BO07193.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20344683..20344830 | 1103..1250 | 100 | -> | Plus |
arm_3L | 20345907..20345986 | 1251..1332 | 97 | | Plus |
arm_3L | 20342221..20342306 | 17..102 | 100 | -> | Plus |
arm_3L | 20343405..20343580 | 103..278 | 100 | -> | Plus |
arm_3L | 20343659..20344128 | 279..748 | 100 | -> | Plus |
arm_3L | 20344194..20344349 | 749..904 | 100 | -> | Plus |
arm_3L | 20344424..20344621 | 905..1102 | 100 | -> | Plus |
BO07193.pep Sequence
Translation from 16 to 1348
> BO07193.pep
MSGEETSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSK
MLADEFGTASNIKSRVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYCGTI
VTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFGFIV
MDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHN
YVRKVAEVATQLFITNDKPNIAGLILAGSADFKTELSQSDMFDPRLQSKV
IKLVDVSYGGENGFNQAIELAAESLQNVKFIQEKKLIGRYFDEISQDTGK
YCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHANSTSTTVLHLTPE
QEKDKSHFTDKESGVEMELIESQPLLEWLANNYKMFGATLEIITDKSQEG
SQFVRGFGGIGGILRYKVDFQSMQLDELDNDGFDLDDYASFLDH
BO07193.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:44:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eRF1-PG | 438 | CG5605-PG | 1..438 | 1..438 | 2246 | 100 | Plus |
eRF1-PA | 438 | CG5605-PA | 1..438 | 1..438 | 2246 | 100 | Plus |
eRF1-PF | 438 | CG5605-PF | 1..438 | 1..438 | 2246 | 100 | Plus |
eRF1-PE | 438 | CG5605-PE | 1..438 | 1..438 | 2246 | 100 | Plus |
eRF1-PB | 438 | CG5605-PB | 1..438 | 1..438 | 2246 | 100 | Plus |