Clone BO07193 Report

Search the DGRC for BO07193

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:71
Well:93
Vector:pDNR-Dual
Associated Gene/TranscripteRF1-RB
Protein status:BO07193.pep: validated full length
Sequenced Size:1348

Clone Sequence Records

BO07193.3prime Sequence

840 bp (800 high quality bases) assembled on 2005-12-04

> BO07193.3prime
ATGGTCTAGAAAGCTTGCGTAATCATCTAGATCGAAGCCATCATTGTCCA
ATTCATCGAGCTGCATACTCTGGAAATCCACCTTGTAGCGTAAGATACCG
CCGATTCCACCGAAACCTCGCACGAACTGACTTCCTTCCTGGGACTTATC
CGTGATAATCTCCAGTGTGGCGCCGAACATTTTGTAGTTGTTTGCCAGCC
ATTCCAGCAGCGGCTGAGACTCAATCAGCTCCATTTCTACCCCGCTCTCC
TTGTCAGTGAAGTGCGACTTGTCCTTTTCCTGCTCGGGCGTCAAATGTAA
TACTGTCGTTGACGTCGAGTTGGCATGATTCTTGAGAACATAACGTTGAA
TATCCAGGTTCTCCCAACAAATGAGAGTCTCTACAGAGCCAAGTTCCAGT
GCCCGCAAAGTGTCCTCCACTCCAAAACAGTATTTGCCAGTATCCTGAGA
AATTTCATCAAAGTAGCGACCAATGAGTTTCTTCTCCTGTATGAATTTAA
CGTTCTGCAATGATTCGGCCGCCAGTTCAATGGCCTGGTTAAAACCGTTT
TCCCCACCATACGACACGTCCACCAGCTTGATGACTTTTGATTGCAAACG
AGGATCGAACATATCAGACTGACTAAGCTCAGTCTTGAAATCCGCACTAC
CAGCCAGGATGAGTCCGGCAATGTTGGGCTTGTCGTTCGTGATGAAGAGC
TGGGTGGCCACCTCGGCGACCTTCCGCACGTAGTTGTGGCGCTTCTCCAT
ACGCAGACGGGCGAAACGAAGGGCGGACTGACCACCACGACCGTGCTTCT
TCGGCAGATCGACGGTGAACTTGTGGAGCACCTCGCGCGT

BO07193.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:57:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5605-PC 1317 eRF1-RC 493..1314 840..19 4110 100 Minus
CG5605-PB 1317 eRF1-RB 493..1314 840..19 4110 100 Minus
CG5605-PE 1317 eRF1-RE 493..1314 840..19 4110 100 Minus
CG5605-PF 1317 eRF1-RF 493..1314 840..19 4110 100 Minus
CG5605-PA 1317 eRF1-RA 493..1314 840..19 4110 100 Minus
CG5605-PG 1317 eRF1-RG 493..1314 840..19 4110 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
eRF1-RG 1739 CG5605-RG 677..1498 840..19 4110 100 Minus
eRF1-RA 2321 CG5605-RA 1259..2080 840..19 4110 100 Minus
eRF1-RF 1788 CG5605-RF 726..1547 840..19 4110 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20350789..20351028 840..601 1200 100 Minus
3L 28110227 3L 20351322..20351521 446..247 1000 100 Minus
3L 28110227 3L 20351094..20351250 600..444 785 100 Minus
3L 28110227 3L 20351581..20351733 248..96 765 100 Minus
3L 28110227 3L 20352806..20352886 99..19 405 100 Minus
Blast to na_te.dros performed on 2015-02-12 09:56:49 has no hits.

BO07193.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:11:59 Download gff for BO07193.3prime
Subject Subject Range Query Range Percent Splice Strand
eRF1-PG 493..1317 18..840 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:51:58 Download gff for BO07193.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5605-PG 493..1317 18..840 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:44:03 Download gff for BO07193.3prime
Subject Subject Range Query Range Percent Splice Strand
eRF1-RF 726..1547 19..840 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:55:43 Download gff for BO07193.3prime
Subject Subject Range Query Range Percent Splice Strand
eRF1-RF 726..1547 19..840 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:55:43 Download gff for BO07193.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20351583..20351730 99..246 100 -> Minus
3L 20352807..20352886 19..98 100   Minus
3L 20350789..20351028 601..840 100 -> Minus
3L 20351094..20351249 445..600 100 -> Minus
3L 20351324..20351521 247..444 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:44:03 Download gff for BO07193.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20343889..20344128 601..840 100 -> Minus
arm_3L 20344194..20344349 445..600 100 -> Minus
arm_3L 20344424..20344621 247..444 100 -> Minus
arm_3L 20344683..20344830 99..246 100 -> Minus
arm_3L 20345907..20345986 19..98 100   Minus

BO07193.5prime Sequence

862 bp (808 high quality bases) assembled on 2005-12-03

> BO07193.5prime
GAAGTTATCAGTCGACATGTCTGGCGAGGAAACGTCTGCCGATCGCAATG
TCGAGATCTGGAAAATCAAGAAGCTCATCAAGAGCCTGGAAATGGCCCGC
GGCAATGGAACCAGCATGATTTCTTTGATTATTCCGCCAAAGGATCAAAT
CTCGCGCGTCAGCAAGATGTTGGCCGATGAGTTTGGAACGGCGTCGAACA
TCAAGTCGCGTGTAAATCGGTTGTCCGTCCTCGGTGCCATTACGTCGGTA
CAGCACAGACTCAAATTATACACCAAAGTGCCTCCCAACGGTTTGGTCAT
CTACTGCGGCACAATAGTCACAGAGGAGGGCAAGGAGAAGAAGGTGAACA
TAGACTTTGAGCCATTCAAGCCCATAAACACGTCGCTCTACCTCTGCGAC
AACAAGTTCCACACGGAGGCCCTCACTGCCCTGCTCGCCGACGACAACAA
ATTTGGATTCATCGTGATGGATGGTAACGGAGCGCTATTCGGTACCCTTC
AGGGCAACACGCGCGAGGTGCTCCACAAGTTCACCGTCGATCTGCCGAAG
AAGCACGGTCGTGGTGGTCAGTCCGCCCTTCGTTTCGCCCGTCTGCGTAT
GGAGAAGCGCCACAACTACGTGCGGAAGGTCGCCGAGGTGGCCACCCAGC
TCTTCATCACGAACGACAAGCCCAACATTGCCGGACTCATCCTGGCTGGT
AGTGCGGATTTCAAGACTGAGCTTAGTCAGTCTGATATGTTCGATCCTCG
TTTGCAATCAAAAGTCATCAAGCTGGTGGACGTGTCGTATGGTGGGGAAA
ACGGTTTTAACCAGGCCATTGAACTGGCGGCCGAATCATTGCAGAACGTT
AAATCATACAGG

BO07193.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG5605-PC 1317 eRF1-RC 1..838 17..854 4190 100 Plus
CG5605-PB 1317 eRF1-RB 1..838 17..854 4190 100 Plus
CG5605-PE 1317 eRF1-RE 1..838 17..854 4190 100 Plus
CG5605-PF 1317 eRF1-RF 1..838 17..854 4190 100 Plus
CG5605-PA 1317 eRF1-RA 1..838 17..854 4190 100 Plus
CG5605-PG 1317 eRF1-RG 1..838 17..854 4190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:07:41
Subject Length Description Subject Range Query Range Score Percent Strand
eRF1-RI 1873 CG5605-RI 211..1057 17..862 4210 99.9 Plus
eRF1-RH 1806 CG5605-RH 211..1057 17..862 4210 99.9 Plus
eRF1-RG 1739 CG5605-RG 185..1031 17..862 4210 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20350557..20351028 277..748 2360 100 Plus
3L 28110227 3L 20350304..20350480 102..278 885 100 Plus
3L 28110227 3L 20351094..20351199 749..854 530 100 Plus
3L 28110227 3L 20349121..20349206 17..102 430 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:07:36 has no hits.

BO07193.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:00 Download gff for BO07193.5prime
Subject Subject Range Query Range Percent Splice Strand
eRF1-PG 1..847 17..862 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:00 Download gff for BO07193.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5605-PG 1..847 17..862 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:42:25 Download gff for BO07193.5prime
Subject Subject Range Query Range Percent Splice Strand
eRF1-RG 249..1101 10..862 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:13:47 Download gff for BO07193.5prime
Subject Subject Range Query Range Percent Splice Strand
eRF1-RG 179..1031 10..862 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:13:47 Download gff for BO07193.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20349115..20349206 10..102 96 -> Plus
3L 20350305..20350480 103..278 100 -> Plus
3L 20350559..20351028 279..748 100 -> Plus
3L 20351094..20351208 749..862 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:42:25 Download gff for BO07193.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20342215..20342306 10..102 96 -> Plus
arm_3L 20343405..20343580 103..278 100 -> Plus
arm_3L 20343659..20344128 279..748 100 -> Plus
arm_3L 20344194..20344308 749..862 99   Plus

BO07193.complete Sequence

1348 bp (1348 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630700

> BO07193.complete
GAAGTTATCAGTCGACATGTCTGGCGAGGAAACGTCTGCCGATCGCAATG
TCGAGATCTGGAAAATCAAGAAGCTCATCAAGAGCCTGGAAATGGCCCGC
GGCAATGGAACCAGCATGATTTCTTTGATTATTCCGCCAAAGGATCAAAT
CTCGCGCGTCAGCAAGATGTTGGCCGATGAGTTTGGAACGGCGTCGAACA
TCAAGTCGCGTGTAAATCGGTTGTCCGTCCTCGGTGCCATTACGTCGGTA
CAGCACAGACTCAAATTATACACCAAAGTGCCTCCCAACGGTTTGGTCAT
CTACTGCGGCACAATAGTCACAGAGGAGGGCAAGGAGAAGAAGGTGAACA
TAGACTTTGAGCCATTCAAGCCCATAAACACGTCGCTCTACCTCTGCGAC
AACAAGTTCCACACGGAGGCCCTCACTGCCCTGCTCGCCGACGACAACAA
ATTTGGATTCATCGTGATGGATGGTAACGGAGCGCTATTCGGTACCCTTC
AGGGCAACACGCGCGAGGTGCTCCACAAGTTCACCGTCGATCTGCCGAAG
AAGCACGGTCGTGGTGGTCAGTCCGCCCTTCGTTTCGCCCGTCTGCGTAT
GGAGAAGCGCCACAACTACGTGCGGAAGGTCGCCGAGGTGGCCACCCAGC
TCTTCATCACGAACGACAAGCCCAACATTGCCGGACTCATCCTGGCTGGT
AGTGCGGATTTCAAGACTGAGCTTAGTCAGTCTGATATGTTCGATCCTCG
TTTGCAATCAAAAGTCATCAAGCTGGTGGACGTGTCGTATGGTGGGGAAA
ACGGTTTTAACCAGGCCATTGAACTGGCGGCCGAATCATTGCAGAACGTT
AAATTCATACAGGAGAAGAAACTCATTGGTCGCTACTTTGATGAAATTTC
TCAGGATACTGGCAAATACTGTTTTGGAGTGGAGGACACTTTGCGGGCAC
TGGAACTTGGCTCTGTAGAGACTCTCATTTGTTGGGAGAACCTGGATATT
CAACGTTATGTTCTCAAGAATCATGCCAACTCGACGTCAACGACAGTATT
ACATTTGACGCCCGAGCAGGAAAAGGACAAGTCGCACTTCACTGACAAGG
AGAGCGGGGTAGAAATGGAGCTGATTGAGTCTCAGCCGCTGCTGGAATGG
CTGGCAAACAACTACAAAATGTTCGGCGCCACACTGGAGATTATCACGGA
TAAGTCCCAGGAAGGAAGTCAGTTCGTGCGAGGTTTCGGTGGAATCGGCG
GTATCTTACGCTACAAGGTGGATTTCCAGAGTATGCAGCTCGATGAATTG
GACAATGATGGCTTCGATCTAGATGATTACGCAAGCTTTCTAGACCAT

BO07193.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:17:57
Subject Length Description Subject Range Query Range Score Percent Strand
eRF1-RG 1317 CG5605-PG 1..1314 17..1330 6570 100 Plus
eRF1-RA 1317 CG5605-PA 1..1314 17..1330 6570 100 Plus
eRF1-RF 1317 CG5605-PF 1..1314 17..1330 6570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:17:58
Subject Length Description Subject Range Query Range Score Percent Strand
eRF1-RG 1739 CG5605-RG 185..1498 17..1330 6570 100 Plus
eRF1-RA 2321 CG5605-RA 767..2080 17..1330 6570 100 Plus
eRF1-RF 1788 CG5605-RF 234..1547 17..1330 6570 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:17:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20350557..20351028 277..748 2360 100 Plus
3L 28110227 3L 20351322..20351521 903..1102 1000 100 Plus
3L 28110227 3L 20350304..20350480 102..278 885 100 Plus
3L 28110227 3L 20351094..20351250 749..905 785 100 Plus
3L 28110227 3L 20351581..20351733 1101..1253 765 100 Plus
3L 28110227 3L 20349121..20349206 17..102 430 100 Plus
3L 28110227 3L 20352806..20352886 1250..1330 405 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:17:56 has no hits.

BO07193.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:51 Download gff for BO07193.complete
Subject Subject Range Query Range Percent Splice Strand
eRF1-RE 1..1317 17..1331 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:40:14 Download gff for BO07193.complete
Subject Subject Range Query Range Percent Splice Strand
eRF1-RE 443..1762 10..1330 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:48 Download gff for BO07193.complete
Subject Subject Range Query Range Percent Splice Strand
eRF1-RF 234..1547 17..1332 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:51 Download gff for BO07193.complete
Subject Subject Range Query Range Percent Splice Strand
eRF1-RE 443..1762 10..1330 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:23 Download gff for BO07193.complete
Subject Subject Range Query Range Percent Splice Strand
eRF1-RF 234..1547 17..1332 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:23 Download gff for BO07193.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20351094..20351249 749..904 100 -> Plus
3L 20351324..20351521 905..1102 100 -> Plus
3L 20351583..20351730 1103..1250 100 -> Plus
3L 20352807..20352886 1251..1332 97   Plus
3L 20349121..20349206 17..102 100 -> Plus
3L 20350305..20350480 103..278 100 -> Plus
3L 20350559..20351028 279..748 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:48 Download gff for BO07193.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20344683..20344830 1103..1250 100 -> Plus
arm_3L 20345907..20345986 1251..1332 97   Plus
arm_3L 20342221..20342306 17..102 100 -> Plus
arm_3L 20343405..20343580 103..278 100 -> Plus
arm_3L 20343659..20344128 279..748 100 -> Plus
arm_3L 20344194..20344349 749..904 100 -> Plus
arm_3L 20344424..20344621 905..1102 100 -> Plus

BO07193.pep Sequence

Translation from 16 to 1348

> BO07193.pep
MSGEETSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSK
MLADEFGTASNIKSRVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYCGTI
VTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFGFIV
MDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHN
YVRKVAEVATQLFITNDKPNIAGLILAGSADFKTELSQSDMFDPRLQSKV
IKLVDVSYGGENGFNQAIELAAESLQNVKFIQEKKLIGRYFDEISQDTGK
YCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHANSTSTTVLHLTPE
QEKDKSHFTDKESGVEMELIESQPLLEWLANNYKMFGATLEIITDKSQEG
SQFVRGFGGIGGILRYKVDFQSMQLDELDNDGFDLDDYASFLDH

BO07193.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:44:40
Subject Length Description Subject Range Query Range Score Percent Strand
eRF1-PG 438 CG5605-PG 1..438 1..438 2246 100 Plus
eRF1-PA 438 CG5605-PA 1..438 1..438 2246 100 Plus
eRF1-PF 438 CG5605-PF 1..438 1..438 2246 100 Plus
eRF1-PE 438 CG5605-PE 1..438 1..438 2246 100 Plus
eRF1-PB 438 CG5605-PB 1..438 1..438 2246 100 Plus