Clone Sequence Records
BO07195.3prime Sequence
906 bp (752 high quality bases) assembled on 2005-12-04
> BO07195.3prime
ATGGTCTAGAAAGCTTGCCTGCTGTGCGGTGGGAGCAGTTTCCGCTGCCG
TGCGGTTGGCATCCTCCGGTTTCATGGCGGGGAACAGCAGAACCTCCTTG
ATGTTGTTGGAGTCCGTGAGGAACATGGCCAGGCGATCGATGCCCATGCC
AAAACCACCGGTGGGCGGCAGTCCGTACTCCAGGGACGTGCAGAAGTTCT
CGTCGACCAGCTGGGCCTCATCATCGCCGGCCGCCTTGTCGCTGGCCTGC
TGCTCGAAACGCTCGCGCTGCACAACCGGATCGTTCAACTCGGTATACGC
GTTGCAAATCTCCTTCTTGGCCACAAACAGTTCGAAGCGCTCCGTCAGGC
CGGGAATACTGCGATGGTACTTGGCCAGCGGCGACATGATCTGCGGATGC
TCACAGATGAACGTTGGATTCACGCAAAACTCCTCGATGAATTCGCCGAC
GAGCTTGTCCAGCAGGCGGGCAGTGGTGCGCGGAGCTGGGCACTCGACCT
GGTGCTTAGCGCACAGCTGAGACAGGAACTGATTCGTCTCTGGCGAATTG
AAGGTGTCGGCCGCGGGGAACTTCACCTGCAGCTTCTCTTCCAGCGTTTT
GATCATGGATACGCGCTTAAAGGGCGGCGTAAAGTCAAGTTCTTGCTCAG
GTCCCTCTGGACCCTCCGGATGATAGATGACCTTGTAGGAGCCACGGATC
GCTTTCACCATTCCCGAGACCAACTGCTCGGTGATATCCATAATGTCAGC
GTAGTCGGCATACGCCATGTAGAACTCGCACGTGGTGAATTCAGGATTGT
GGGTGAGGTCGATGCCCTCGTTGCGGAACTGCCGTCCGATCTCGTACACA
CGATCGAGTCCACCCACCACCAGCATCTTGTGATACAGCTCCGGAGCAAT
GCGCAT
BO07195.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:57:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12141-PA | 1725 | Aats-lys-RA | 835..1722 | 906..19 | 4440 | 100 | Minus |
| CG12141-PB | 1824 | Aats-lys-RB | 934..1821 | 906..19 | 4440 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:41:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-lys-RC | 2160 | CG12141-RC | 1160..2047 | 906..19 | 4440 | 100 | Minus |
| Aats-lys-RB | 2223 | CG12141-RB | 1223..2110 | 906..19 | 4440 | 100 | Minus |
| Aats-lys-RA | 1969 | CG12141-RA | 969..1856 | 906..19 | 4440 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:41:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9606612..9607429 | 89..906 | 4060 | 99.8 | Plus |
| X | 23542271 | X | 9606476..9606555 | 19..98 | 400 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 12:41:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 7727..7764 | 316..279 | 118 | 78.9 | Minus |
BO07195.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:01 Download gff for
BO07195.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12141-PA | 835..1725 | 18..906 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:02 Download gff for
BO07195.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12141-PB | 934..1824 | 18..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:03:39 Download gff for
BO07195.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-lys-RA | 969..1856 | 19..906 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:19:37 Download gff for
BO07195.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-lys-RA | 969..1856 | 19..906 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:19:37 Download gff for
BO07195.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9606476..9606553 | 19..96 | 100 | <- | Plus |
| X | 9606620..9607429 | 97..906 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:03:39 Download gff for
BO07195.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9500509..9500586 | 19..96 | 100 | <- | Plus |
| arm_X | 9500653..9501462 | 97..906 | 100 | | Plus |
BO07195.5prime Sequence
945 bp (801 high quality bases) assembled on 2005-12-04
> BO07195.5prime
GAAGTTATCAGTCGACATGGCCGCTGCAAGTGGAGAACTGTCCAAGAATG
AGCTAAAGCGTCGCCTGAAGGCCGAGCAAAAGGCCAAGGAGAAGGCTGAG
AAGGCGGCCGCTGCGCCGGCGGAAAATACTGCTGGCAAGAAGAAGAGCAG
TGCCGCCGAGGAGGAGGAGATCTCGCCGAATGAATACTTTAAGCTGCGCT
CCGCCGCCGTTCAGGAGCTGAAACGTTCACCCGCAACGGATCCCTATCCA
CACAAGTTCCATGTGAGTAGCTCGCTGGAAGACTTCATTGCCAAGTACGA
GAACAGCCTCAAGGAGGGCGAGACCCTGGAGAATGTCAAACTGAGCGTGG
CTGGGCGCGTGCATGCCATACGCGAGTCGGGCGCCAAGCTCATTTTCTAC
GATCTGCGCGGCGAGGGCGTCAAGGTGCAGGTGATGGCCAGCGCTAAGTC
CTACAAGTCGGAGGCGGATTTCGAAATCGATACGTCCAAATTGCGACGTG
GTGATATCATCGGCGTTGTCGGACATCCCGGCAAAACCAAGAAGGGTGAA
CTGTCCGTTATGCCCAGCGAGATCAAGCTGCTATCGCCCTGTCTACACAT
GCTGCCCCATCTGCATTTCGGGTTGAAGGACAAGGAGACGCGCTACCGCC
AGCGCTATCTTGATCTCATTCTCAACAACAATGTGCGAGAGAAATTCCAG
ATCCGTGCCAAGATCATCTCGTACGTGCGTCAGTTCCTGGATCGTCTGGG
TTTCCTGGAGATCGAGACGCCCATGATGAACATGATCGCCGGTGGAGCCA
CTGCCAAGCCCTTCGTGACGCATCACAATGACCTCAAGATGGATCTGTTC
ATGCGCATTGCTCCGGAGCTGTATCACAAGATGCTGGTGGTGGGTGGACT
CGATCGTGTGTACGAGATCGGACGGCAGTTCCCGCACGAGGGCAT
BO07195.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:57:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12141-PA | 1725 | Aats-lys-RA | 1..916 | 17..932 | 4580 | 100 | Plus |
| CG12141-PB | 1824 | Aats-lys-RB | 132..1015 | 49..932 | 4420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:07:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-lys-RA | 1969 | CG12141-RA | 134..1063 | 16..945 | 4605 | 99.8 | Plus |
| Aats-lys-RC | 2160 | CG12141-RC | 358..1254 | 49..945 | 4440 | 99.8 | Plus |
| Aats-lys-RB | 2223 | CG12141-RB | 421..1317 | 49..945 | 4440 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:07:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9607629..9608292 | 712..49 | 3320 | 100 | Minus |
| X | 23542271 | X | 9607335..9607569 | 945..711 | 1130 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:07:51 has no hits.
BO07195.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:02 Download gff for
BO07195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12141-PA | 1..929 | 17..945 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:03 Download gff for
BO07195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12141-PA | 1..929 | 17..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:42:27 Download gff for
BO07195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-lys-RA | 128..1063 | 9..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:14:17 Download gff for
BO07195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-lys-RA | 128..1063 | 9..945 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:14:17 Download gff for
BO07195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9607335..9607567 | 713..945 | 99 | <- | Minus |
| X | 9607629..9608292 | 49..712 | 100 | <- | Minus |
| X | 9608719..9608757 | 9..48 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:42:27 Download gff for
BO07195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9501368..9501600 | 713..945 | 99 | <- | Minus |
| arm_X | 9501662..9502325 | 49..712 | 100 | <- | Minus |
| arm_X | 9502752..9502790 | 9..48 | 92 | | Minus |
BO07195.complete Sequence
1756 bp (1756 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630701
> BO07195.complete
GAAGTTATCAGTCGACATGGCCGCTGCAAGTGGAGAACTGTCCAAGAATG
AGCTAAAGCGTCGCCTGAAGGCCGAGCAAAAGGCCAAGGAGAAGGCTGAG
AAGGCGGCCGCTGCGCCGGCGGAAAATACTGCTGGCAAGAAGAAGAGCAG
TGCCGCCGAGGAGGAGGAGATCTCGCCGAATGAATACTTTAAGCTGCGCT
CCGCCGCCGTTCAGGAGCTGAAACGTTCACCCGCAACGGATCCCTATCCA
CACAAGTTCCATGTGAGTAGCTCGCTGGAAGACTTCATTGCCAAGTACGA
GAACAGCCTCAAGGAGGGCGAGACCCTGGAGAATGTCAAACTGAGCGTGG
CTGGGCGCGTGCATGCCATACGCGAGTCGGGCGCCAAGCTCATTTTCTAC
GATCTGCGCGGCGAGGGCGTCAAGGTGCAGGTGATGGCCAGCGCTAAGTC
CTACAAGTCGGAGGCGGATTTCGAAATCGATACGTCCAAATTGCGACGTG
GTGATATCATCGGCGTTGTCGGACATCCCGGCAAAACCAAGAAGGGTGAA
CTGTCCGTTATGCCCAGCGAGATCAAGCTGCTATCGCCCTGTCTACACAT
GCTGCCCCATCTGCATTTCGGGTTGAAGGACAAGGAGACGCGCTACCGCC
AGCGCTATCTTGATCTCATTCTCAACAACAATGTGCGAGAGAAATTCCAG
ATCCGTGCCAAGATCATCTCGTACGTGCGTCAGTTCCTGGATCGTCTGGG
TTTCCTGGAGATCGAGACGCCCATGATGAACATGATCGCCGGTGGAGCCA
CTGCCAAGCCCTTCGTGACGCATCACAATGACCTCAAGATGGATCTGTTC
ATGCGCATTGCTCCGGAGCTGTATCACAAGATGCTGGTGGTGGGTGGACT
CGATCGTGTGTACGAGATCGGACGGCAGTTCCGCAACGAGGGCATCGACC
TCACCCACAATCCTGAATTCACCACGTGCGAGTTCTACATGGCGTATGCC
GACTACGCTGACATTATGGATATCACCGAGCAGTTGGTCTCGGGAATGGT
GAAAGCGATCCGTGGCTCCTACAAGGTCATCTATCATCCGGAGGGTCCAG
AGGGACCTGAGCAAGAACTTGACTTTACGCCGCCCTTTAAGCGCGTATCC
ATGATCAAAACGCTGGAAGAGAAGCTGCAGGTGAAGTTCCCCGCGGCCGA
CACCTTCAATTCGCCAGAGACGAATCAGTTCCTGTCTCAGCTGTGCGCTA
AGCACCAGGTCGAGTGCCCAGCTCCGCGCACCACTGCCCGCCTGCTGGAC
AAGCTCGTCGGCGAATTCATCGAGGAGTTTTGCGTGAATCCAACGTTCAT
CTGTGAGCATCCGCAGATCATGTCGCCGCTGGCCAAGTACCATCGCAGTA
TTCCCGGCCTGACGGAGCGCTTCGAACTGTTTGTGGCCAAGAAGGAGATT
TGCAACGCGTATACCGAGTTGAACGATCCGGTTGTGCAGCGCGAGCGTTT
CGAGCAGCAGGCCAGCGACAAGGCGGCCGGCGATGATGAGGCCCAGCTGG
TCGACGAGAACTTCTGCACGTCCCTGGAGTACGGACTGCCGCCCACCGGT
GGTTTTGGCATGGGCATCGATCGCCTGGCCATGTTCCTCACGGACTCCAA
CAACATCAAGGAGGTTCTGCTGTTCCCCGCCATGAAACCGGAGGATGCCA
ACCGCACGGCAGCGGAAACTGCTCCCACCGCACAGCAGGCAAGCTTTCTA
GACCAT
BO07195.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:32:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-lys-RA | 1725 | CG12141-PA | 1..1722 | 17..1738 | 8610 | 100 | Plus |
| Aats-lys-RC | 1824 | CG12141-PC | 132..1821 | 49..1738 | 8450 | 100 | Plus |
| Aats-lys-RB | 1824 | CG12141-PB | 132..1821 | 49..1738 | 8450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:32:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-lys-RA | 1969 | CG12141-RA | 134..1856 | 16..1738 | 8615 | 100 | Plus |
| Aats-lys-RC | 2160 | CG12141-RC | 358..2047 | 49..1738 | 8450 | 100 | Plus |
| Aats-lys-RB | 2223 | CG12141-RB | 421..2110 | 49..1738 | 8450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:32:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9606612..9607569 | 1668..711 | 4760 | 99.8 | Minus |
| X | 23542271 | X | 9607629..9608292 | 712..49 | 3320 | 100 | Minus |
| X | 23542271 | X | 9606476..9606555 | 1738..1659 | 400 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 13:32:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 7727..7764 | 1441..1478 | 118 | 78.9 | Plus |
BO07195.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:15 Download gff for
BO07195.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-lys-RA | 1..1725 | 17..1739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:22:16 Download gff for
BO07195.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-lys-RA | 128..1856 | 9..1738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:51:40 Download gff for
BO07195.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-lys-RA | 135..1856 | 17..1740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:15 Download gff for
BO07195.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-lys-RA | 128..1856 | 9..1738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:51 Download gff for
BO07195.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-lys-RA | 135..1856 | 17..1740 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:51 Download gff for
BO07195.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9606474..9606553 | 1661..1740 | 97 | <- | Minus |
| X | 9606620..9607567 | 713..1660 | 100 | <- | Minus |
| X | 9607629..9608292 | 49..712 | 100 | <- | Minus |
| X | 9608719..9608750 | 17..48 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:51:40 Download gff for
BO07195.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9500507..9500586 | 1661..1740 | 97 | <- | Minus |
| arm_X | 9500653..9501600 | 713..1660 | 100 | <- | Minus |
| arm_X | 9501662..9502325 | 49..712 | 100 | <- | Minus |
| arm_X | 9502752..9502783 | 17..48 | 100 | | Minus |
BO07195.pep Sequence
Translation from 16 to 1756
> BO07195.pep
MAAASGELSKNELKRRLKAEQKAKEKAEKAAAAPAENTAGKKKSSAAEEE
EISPNEYFKLRSAAVQELKRSPATDPYPHKFHVSSSLEDFIAKYENSLKE
GETLENVKLSVAGRVHAIRESGAKLIFYDLRGEGVKVQVMASAKSYKSEA
DFEIDTSKLRRGDIIGVVGHPGKTKKGELSVMPSEIKLLSPCLHMLPHLH
FGLKDKETRYRQRYLDLILNNNVREKFQIRAKIISYVRQFLDRLGFLEIE
TPMMNMIAGGATAKPFVTHHNDLKMDLFMRIAPELYHKMLVVGGLDRVYE
IGRQFRNEGIDLTHNPEFTTCEFYMAYADYADIMDITEQLVSGMVKAIRG
SYKVIYHPEGPEGPEQELDFTPPFKRVSMIKTLEEKLQVKFPAADTFNSP
ETNQFLSQLCAKHQVECPAPRTTARLLDKLVGEFIEEFCVNPTFICEHPQ
IMSPLAKYHRSIPGLTERFELFVAKKEICNAYTELNDPVVQRERFEQQAS
DKAAGDDEAQLVDENFCTSLEYGLPPTGGFGMGIDRLAMFLTDSNNIKEV
LLFPAMKPEDANRTAAETAPTAQQASFLDH
BO07195.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:28:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-lys-PA | 574 | CG12141-PA | 1..574 | 1..574 | 2963 | 100 | Plus |
| Aats-lys-PC | 607 | CG12141-PC | 42..607 | 9..574 | 2915 | 99.6 | Plus |
| Aats-lys-PB | 607 | CG12141-PB | 42..607 | 9..574 | 2915 | 99.6 | Plus |
| CG31739-PC | 1082 | CG31739-PC | 337..654 | 6..339 | 196 | 23.5 | Plus |
| CG31739-PB | 1082 | CG31739-PB | 337..654 | 6..339 | 196 | 23.5 | Plus |
