Clone Sequence Records
BO07205.3prime Sequence
917 bp (903 high quality bases) assembled on 2005-12-04
> BO07205.3prime
ATGGTCTAGAAAGCTTGCCTCCTCCCTCTTCTTCTTCCTTTTGGGCTTAT
CCTCGCCATCGGAATCCTGGCTGGTGGCACTGGAATCGCTGGCACTGCTG
CTGCTCTCCTGCTTGCGCTTTTCGGGCGTCTTCTTGGCCAGCTTTTCGAT
GTACTGCTTCAGCTTGTCCGGCTGCGGACTGTATGCCCAGTGGATCAACT
GCAGGTGCAGGTCGGTGGGTGCTCCGGTCTCTGCATCGAAGAGCTTGGCC
TCCTCACTCTTAATCTGCTCCAGCAACTTGGACAGCTGACGATTGCGCAC
AATATCCCAGCTGGTCTTTTCATCCGTTTTGGGGAACATTGTGCGCAGGT
GCTTGTAGTTACCCTTGGCCTTGGAGCCGCCATAGGCTTCGAGAAACTCC
TTAGCCAACTCATCTTTGGGATCGGGCAGTTTGGTGACCACGGCGAGTGG
CAAGTATGCTCGATTGTCCTTGATACGATTCTCGGCCTCGAACTTTTCGA
GGAAATCCTCAAGTACCTGGACTCCCTCCTTTATGGCCGTGATCTTGTCC
TCGTTCTTGGTGCCTGACAGGACACGCTTGGAGCTGCCAATCAATCCCTT
GATGGCCAACCTCTGGTAGTCCGGATCTCGTTCCGCCAAAATGCTCAGCG
TTGCCTCCGCAGCAGCCTTGTCCTTGAATCCCAATCCCGGCACCGTCTCC
ACCTTGTCCTCGCTCTCTGTCTTGGCATTCTTGCTGGACGCCCCTCCGCC
ATTCTCCTCCAGCCACTTTTCAAAGACTCCAATGGCCGCATTGATGTTCT
TCAGCTTCTCCTCCGCCTTGGTCATTGTCAGGACTCTTTTGGCCCGGCCA
AGCAAACCGCGCACCGTCAGCTTGCGATACTGCATGTCGTGACTCTCCAG
CAGCTTCAACGTCTCTA
BO07205.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:57:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18410-PA | 1068 | CG18410-RA | 167..1065 | 917..19 | 4495 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:27:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ude-RD | 1517 | CG18410-RD | 122..1020 | 917..19 | 4495 | 100 | Minus |
Ude-RC | 1473 | CG18410-RC | 213..1111 | 917..19 | 4495 | 100 | Minus |
Ude-RB | 1382 | CG18410-RB | 122..1020 | 917..19 | 4495 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:27:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24797957..24798583 | 19..645 | 3135 | 100 | Plus |
3R | 32079331 | 3R | 24799127..24799307 | 644..824 | 905 | 100 | Plus |
3R | 32079331 | 3R | 24799364..24799456 | 825..917 | 465 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 05:27:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 3652..3822 | 132..297 | 123 | 58.5 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 1910..1977 | 149..81 | 108 | 63.8 | Minus |
BO07205.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:13 Download gff for
BO07205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18410-PA | 168..1068 | 16..916 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:15 Download gff for
BO07205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18410-PA | 168..1068 | 16..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:02:44 Download gff for
BO07205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ude-RB | 123..1020 | 19..916 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:59:26 Download gff for
BO07205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ude-RB | 123..1020 | 19..916 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:59:26 Download gff for
BO07205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24797957..24798581 | 19..643 | 100 | <- | Plus |
3R | 24799127..24799307 | 644..824 | 100 | <- | Plus |
3R | 24799364..24799455 | 825..916 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:02:44 Download gff for
BO07205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20623679..20624303 | 19..643 | 100 | <- | Plus |
arm_3R | 20624849..20625029 | 644..824 | 100 | <- | Plus |
arm_3R | 20625086..20625177 | 825..916 | 100 | | Plus |
BO07205.5prime Sequence
962 bp (832 high quality bases) assembled on 2005-12-04
> BO07205.5prime
GAAGTTATCAGTCGACATGATTAAGTGCCATATGCCTTCGAGTTGGAGAC
GGCTACGCAAAATCAGTCGTATTCTAGCGCTGACAGGAAGCAGACAGATA
CTCACCCAAGTATTAGCAACCAAAGGAGCAGCAATGGCAGAGGGAGATTC
GAAATTTGGCTTCAAGGACATGGAGAAGGCGTTAGAGACGTTGAAGCTGC
TGGAGAGTCACGACATGCAGTATCGCAAGCTGACGGTGCGCGGTTTGCTT
GGCCGGGCCAAAAGAGTCCTGACAATGACCAAGGCGGAGGAGAAGCTGAA
GAACATCAATGCGGCCATTGGAGTCTTTGAAAAGTGGCTGGAGGAGAATG
GCGGAGGGGCGTCCAGCAAGAATGCCAAGACAGAGAGCGAGGACAAGGTG
GAGACGGTGCCGGGATTGGGATTCAAGGACAAGGCTGCTGCGGAGGCAAC
GCTGAGCATTTTGGCGGAACGAGATCCGGACTACCAGAGGTTGGCCATCA
AGGGATTGATTGGCAGCTCCAAGCGTGTCCTGTCAGGCACCAAGAACGAG
GACAAGATCACGGCCATAAAGGAGGGAGTCCAGGTACTTGAGGATTTCCT
CGAAAAGTTCGAGGCCGAGAATCGTATCAAGGACAATCGAGCATACTTGC
CACTCGCCGTGGTCACCAAACTGCCCGATCCCAAAGATGAGTTGGCTAAG
GAGTTTCTCGAAGCCTATGGCGGCTCCNAGGCCAAGGGTAACTACAAGCA
CCTGCGCACAATGTTCCCCAAAACGGATGAAAAGACCAGCTGGGATATTG
TGCGCAATCGTCAGCTGTCCAAGTTGCTGGAGCAGATTAAGAGTGAGGAG
GCCAAGCTCTTCGATGCAGAGACCGGAGCACCCACCGACCTGCACCTGCA
GTTGATCCACTGGGCATACAGTCCGCAGCCGGACAAGCTGAAGCAGTACA
TCGAAAAGCTGG
BO07205.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:57:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18410-PA | 1068 | CG18410-RA | 1..946 | 17..962 | 4686 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:38:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ude-RC | 1473 | CG18410-RC | 46..992 | 16..962 | 4709 | 99.8 | Plus |
Ude-RD | 1517 | CG18410-RD | 1..901 | 62..962 | 4494 | 99.9 | Plus |
Ude-RB | 1382 | CG18410-RB | 1..901 | 62..962 | 4494 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:38:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24798076..24798583 | 962..455 | 2529 | 99.8 | Minus |
3R | 32079331 | 3R | 24799364..24799623 | 275..16 | 1285 | 99.6 | Minus |
3R | 32079331 | 3R | 24799127..24799307 | 456..276 | 905 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 01:38:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 3663..3822 | 958..803 | 116 | 58.2 | Minus |
BO07205.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:14 Download gff for
BO07205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18410-PA | 1..946 | 17..962 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:16 Download gff for
BO07205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18410-PA | 1..946 | 17..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:31:47 Download gff for
BO07205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ude-RC | 40..992 | 8..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:15:57 Download gff for
BO07205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ude-RC | 40..992 | 8..962 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:15:57 Download gff for
BO07205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24798076..24798581 | 457..962 | 99 | <- | Minus |
3R | 24799127..24799307 | 276..456 | 100 | <- | Minus |
3R | 24799364..24799629 | 8..275 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:31:47 Download gff for
BO07205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20624849..20625029 | 276..456 | 100 | <- | Minus |
arm_3R | 20625086..20625351 | 8..275 | 98 | | Minus |
arm_3R | 20623798..20624303 | 457..962 | 99 | <- | Minus |
BO07205.complete Sequence
1099 bp assembled on 2011-06-28
GenBank Submission: KX800044
> BO07205.complete
GAAGTTATCAGTCGACATGATTAAGTGCCATATGCCTTCGAGTTGGAGAC
GGCTACGCAAAATCAGTCGTATTCTAGCGCTGACAGGAAGCAGACAGATA
CTCACCCAAGTATTAGCAACCAAAGGAGCAGCAATGGCAGAGGGAGATTC
GAAATTTGGCTTCAAGGACATGGAGAAGGCGTTAGAGACGTTGAAGCTGC
TGGAGAGTCACGACATGCAGTATCGCAAGCTGACGGTGCGCGGTTTGCTT
GGCCGGGCCAAAAGAGTCCTGACAATGACCAAGGCGGAGGAGAAGCTGAA
GAACATCAATGCGGCCATTGGAGTCTTTGAAAAGTGGCTGGAGGAGAATG
GCGGAGGGGCGTCCAGCAAGAATGCCAAGACAGAGAGCGAGGACAAGGTG
GAGACGGTGCCGGGATTGGGATTCAAGGACAAGGCTGCTGCGGAGGCAAC
GCTGAGCATTTTGGCGGAACGAGATCCGGACTACCAGAGGTTGGCCATCA
AGGGATTGATTGGCAGCTCCAAGCGTGTCCTGTCAGGCACCAAGAACGAG
GACAAGATCACGGCCATAAAGGAGGGAGTCCAGGTACTTGAGGATTTCCT
CGAAAAGTTCGAGGCCGAGAATCGTATCAAGGACAATCGAGCATACTTGC
CACTCGCCGTGGTCACCAAACTGCCCGATCCCAAAGATGAGTTGGCTAAG
GAGTTTCTCGAAGCCTATGGCGGCTCCAAGGCCAAGGGTAACTACAAGCA
CCTGCGCACAATGTTCCCCAAAACGGATGAAAAGACCAGCTGGGATATTG
TGCGCAATCGTCAGCTGTCCAAGTTGCTGGAGCAGATTAAGAGTGAGGAG
GCCAAGCTCTTCGATGCAGAGACCGGAGCACCCACCGACCTGCACCTGCA
GTTGATCCACTGGGCATACAGTCCGCAGCCGGACAAGCTGAAGCAGTACA
TCGAAAAGCTGGCCAAGAAGACGCCCGAAAAGCGCAAGCAGGAGAGCAGC
AGCAGTGCCAGCGATTCCAGTGCCACCAGCCAGGATTCCGATGGCGAGGA
TAAGCCCAAAAGGAAGAAGAAGAGGGAGGAGGCAAGCTTTCTAGACCAT
BO07205.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:11:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ude-RD | 951 | CG18410-PD | 1..948 | 134..1081 | 4740 | 100 | Plus |
Ude-RC | 951 | CG18410-PC | 1..948 | 134..1081 | 4740 | 100 | Plus |
Ude-RB | 951 | CG18410-PB | 1..948 | 134..1081 | 4740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ude-RC | 1473 | CG18410-RC | 46..1111 | 16..1081 | 5315 | 99.9 | Plus |
Ude-RD | 1517 | CG18410-RD | 1..1020 | 62..1081 | 5100 | 100 | Plus |
Ude-RB | 1382 | CG18410-RB | 1..1020 | 62..1081 | 5100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24797957..24798583 | 1081..455 | 3135 | 100 | Minus |
3R | 32079331 | 3R | 24799364..24799623 | 275..16 | 1285 | 99.6 | Minus |
3R | 32079331 | 3R | 24799127..24799307 | 456..276 | 905 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 16:11:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 3652..3822 | 968..803 | 123 | 58.5 | Minus |
BO07205.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:15 Download gff for
BO07205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18410-RA | 47..1111 | 17..1083 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:54:23 Download gff for
BO07205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ude-RC | 47..1111 | 17..1083 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:07 Download gff for
BO07205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ude-RC | 47..1111 | 17..1083 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:07 Download gff for
BO07205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24797954..24798581 | 457..1083 | 99 | <- | Minus |
3R | 24799127..24799307 | 276..456 | 100 | <- | Minus |
3R | 24799364..24799622 | 17..275 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:54:23 Download gff for
BO07205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20623676..20624303 | 457..1083 | 99 | <- | Minus |
arm_3R | 20624849..20625029 | 276..456 | 100 | <- | Minus |
arm_3R | 20625086..20625344 | 17..275 | 99 | | Minus |
BO07205.pep Sequence
Translation from 16 to 1099
> BO07205.pep
MIKCHMPSSWRRLRKISRILALTGSRQILTQVLATKGAAMAEGDSKFGFK
DMEKALETLKLLESHDMQYRKLTVRGLLGRAKRVLTMTKAEEKLKNINAA
IGVFEKWLEENGGGASSKNAKTESEDKVETVPGLGFKDKAAAEATLSILA
ERDPDYQRLAIKGLIGSSKRVLSGTKNEDKITAIKEGVQVLEDFLEKFEA
ENRIKDNRAYLPLAVVTKLPDPKDELAKEFLEAYGGSKAKGNYKHLRTMF
PKTDEKTSWDIVRNRQLSKLLEQIKSEEAKLFDAETGAPTDLHLQLIHWA
YSPQPDKLKQYIEKLAKKTPEKRKQESSSSASDSSATSQDSDGEDKPKRK
KKREEASFLDH
BO07205.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:50:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ude-PD | 316 | CG18410-PD | 1..316 | 40..355 | 1597 | 100 | Plus |
Ude-PC | 316 | CG18410-PC | 1..316 | 40..355 | 1597 | 100 | Plus |
Ude-PB | 316 | CG18410-PB | 1..316 | 40..355 | 1597 | 100 | Plus |