Clone BO07205 Report

Search the DGRC for BO07205

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:72
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptCG18410-RA
Protein status:BO07205.pep: Imported from assembly
Sequenced Size:1099

Clone Sequence Records

BO07205.3prime Sequence

917 bp (903 high quality bases) assembled on 2005-12-04

> BO07205.3prime
ATGGTCTAGAAAGCTTGCCTCCTCCCTCTTCTTCTTCCTTTTGGGCTTAT
CCTCGCCATCGGAATCCTGGCTGGTGGCACTGGAATCGCTGGCACTGCTG
CTGCTCTCCTGCTTGCGCTTTTCGGGCGTCTTCTTGGCCAGCTTTTCGAT
GTACTGCTTCAGCTTGTCCGGCTGCGGACTGTATGCCCAGTGGATCAACT
GCAGGTGCAGGTCGGTGGGTGCTCCGGTCTCTGCATCGAAGAGCTTGGCC
TCCTCACTCTTAATCTGCTCCAGCAACTTGGACAGCTGACGATTGCGCAC
AATATCCCAGCTGGTCTTTTCATCCGTTTTGGGGAACATTGTGCGCAGGT
GCTTGTAGTTACCCTTGGCCTTGGAGCCGCCATAGGCTTCGAGAAACTCC
TTAGCCAACTCATCTTTGGGATCGGGCAGTTTGGTGACCACGGCGAGTGG
CAAGTATGCTCGATTGTCCTTGATACGATTCTCGGCCTCGAACTTTTCGA
GGAAATCCTCAAGTACCTGGACTCCCTCCTTTATGGCCGTGATCTTGTCC
TCGTTCTTGGTGCCTGACAGGACACGCTTGGAGCTGCCAATCAATCCCTT
GATGGCCAACCTCTGGTAGTCCGGATCTCGTTCCGCCAAAATGCTCAGCG
TTGCCTCCGCAGCAGCCTTGTCCTTGAATCCCAATCCCGGCACCGTCTCC
ACCTTGTCCTCGCTCTCTGTCTTGGCATTCTTGCTGGACGCCCCTCCGCC
ATTCTCCTCCAGCCACTTTTCAAAGACTCCAATGGCCGCATTGATGTTCT
TCAGCTTCTCCTCCGCCTTGGTCATTGTCAGGACTCTTTTGGCCCGGCCA
AGCAAACCGCGCACCGTCAGCTTGCGATACTGCATGTCGTGACTCTCCAG
CAGCTTCAACGTCTCTA

BO07205.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:57:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG18410-PA 1068 CG18410-RA 167..1065 917..19 4495 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
Ude-RD 1517 CG18410-RD 122..1020 917..19 4495 100 Minus
Ude-RC 1473 CG18410-RC 213..1111 917..19 4495 100 Minus
Ude-RB 1382 CG18410-RB 122..1020 917..19 4495 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:27:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24797957..24798583 19..645 3135 100 Plus
3R 32079331 3R 24799127..24799307 644..824 905 100 Plus
3R 32079331 3R 24799364..24799456 825..917 465 100 Plus
Blast to na_te.dros performed 2015-02-13 05:27:47
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 3652..3822 132..297 123 58.5 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 1910..1977 149..81 108 63.8 Minus

BO07205.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:13 Download gff for BO07205.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18410-PA 168..1068 16..916 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:15 Download gff for BO07205.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18410-PA 168..1068 16..916 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:02:44 Download gff for BO07205.3prime
Subject Subject Range Query Range Percent Splice Strand
Ude-RB 123..1020 19..916 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:59:26 Download gff for BO07205.3prime
Subject Subject Range Query Range Percent Splice Strand
Ude-RB 123..1020 19..916 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:59:26 Download gff for BO07205.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24797957..24798581 19..643 100 <- Plus
3R 24799127..24799307 644..824 100 <- Plus
3R 24799364..24799455 825..916 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:02:44 Download gff for BO07205.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20623679..20624303 19..643 100 <- Plus
arm_3R 20624849..20625029 644..824 100 <- Plus
arm_3R 20625086..20625177 825..916 100   Plus

BO07205.5prime Sequence

962 bp (832 high quality bases) assembled on 2005-12-04

> BO07205.5prime
GAAGTTATCAGTCGACATGATTAAGTGCCATATGCCTTCGAGTTGGAGAC
GGCTACGCAAAATCAGTCGTATTCTAGCGCTGACAGGAAGCAGACAGATA
CTCACCCAAGTATTAGCAACCAAAGGAGCAGCAATGGCAGAGGGAGATTC
GAAATTTGGCTTCAAGGACATGGAGAAGGCGTTAGAGACGTTGAAGCTGC
TGGAGAGTCACGACATGCAGTATCGCAAGCTGACGGTGCGCGGTTTGCTT
GGCCGGGCCAAAAGAGTCCTGACAATGACCAAGGCGGAGGAGAAGCTGAA
GAACATCAATGCGGCCATTGGAGTCTTTGAAAAGTGGCTGGAGGAGAATG
GCGGAGGGGCGTCCAGCAAGAATGCCAAGACAGAGAGCGAGGACAAGGTG
GAGACGGTGCCGGGATTGGGATTCAAGGACAAGGCTGCTGCGGAGGCAAC
GCTGAGCATTTTGGCGGAACGAGATCCGGACTACCAGAGGTTGGCCATCA
AGGGATTGATTGGCAGCTCCAAGCGTGTCCTGTCAGGCACCAAGAACGAG
GACAAGATCACGGCCATAAAGGAGGGAGTCCAGGTACTTGAGGATTTCCT
CGAAAAGTTCGAGGCCGAGAATCGTATCAAGGACAATCGAGCATACTTGC
CACTCGCCGTGGTCACCAAACTGCCCGATCCCAAAGATGAGTTGGCTAAG
GAGTTTCTCGAAGCCTATGGCGGCTCCNAGGCCAAGGGTAACTACAAGCA
CCTGCGCACAATGTTCCCCAAAACGGATGAAAAGACCAGCTGGGATATTG
TGCGCAATCGTCAGCTGTCCAAGTTGCTGGAGCAGATTAAGAGTGAGGAG
GCCAAGCTCTTCGATGCAGAGACCGGAGCACCCACCGACCTGCACCTGCA
GTTGATCCACTGGGCATACAGTCCGCAGCCGGACAAGCTGAAGCAGTACA
TCGAAAAGCTGG

BO07205.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:57:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG18410-PA 1068 CG18410-RA 1..946 17..962 4686 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:38:28
Subject Length Description Subject Range Query Range Score Percent Strand
Ude-RC 1473 CG18410-RC 46..992 16..962 4709 99.8 Plus
Ude-RD 1517 CG18410-RD 1..901 62..962 4494 99.9 Plus
Ude-RB 1382 CG18410-RB 1..901 62..962 4494 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24798076..24798583 962..455 2529 99.8 Minus
3R 32079331 3R 24799364..24799623 275..16 1285 99.6 Minus
3R 32079331 3R 24799127..24799307 456..276 905 100 Minus
Blast to na_te.dros performed 2015-02-13 01:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 3663..3822 958..803 116 58.2 Minus

BO07205.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:14 Download gff for BO07205.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18410-PA 1..946 17..962 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:16 Download gff for BO07205.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18410-PA 1..946 17..962 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:31:47 Download gff for BO07205.5prime
Subject Subject Range Query Range Percent Splice Strand
Ude-RC 40..992 8..962 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:15:57 Download gff for BO07205.5prime
Subject Subject Range Query Range Percent Splice Strand
Ude-RC 40..992 8..962 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:15:57 Download gff for BO07205.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24798076..24798581 457..962 99 <- Minus
3R 24799127..24799307 276..456 100 <- Minus
3R 24799364..24799629 8..275 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:31:47 Download gff for BO07205.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20624849..20625029 276..456 100 <- Minus
arm_3R 20625086..20625351 8..275 98   Minus
arm_3R 20623798..20624303 457..962 99 <- Minus

BO07205.complete Sequence

1099 bp assembled on 2011-06-28

GenBank Submission: KX800044

> BO07205.complete
GAAGTTATCAGTCGACATGATTAAGTGCCATATGCCTTCGAGTTGGAGAC
GGCTACGCAAAATCAGTCGTATTCTAGCGCTGACAGGAAGCAGACAGATA
CTCACCCAAGTATTAGCAACCAAAGGAGCAGCAATGGCAGAGGGAGATTC
GAAATTTGGCTTCAAGGACATGGAGAAGGCGTTAGAGACGTTGAAGCTGC
TGGAGAGTCACGACATGCAGTATCGCAAGCTGACGGTGCGCGGTTTGCTT
GGCCGGGCCAAAAGAGTCCTGACAATGACCAAGGCGGAGGAGAAGCTGAA
GAACATCAATGCGGCCATTGGAGTCTTTGAAAAGTGGCTGGAGGAGAATG
GCGGAGGGGCGTCCAGCAAGAATGCCAAGACAGAGAGCGAGGACAAGGTG
GAGACGGTGCCGGGATTGGGATTCAAGGACAAGGCTGCTGCGGAGGCAAC
GCTGAGCATTTTGGCGGAACGAGATCCGGACTACCAGAGGTTGGCCATCA
AGGGATTGATTGGCAGCTCCAAGCGTGTCCTGTCAGGCACCAAGAACGAG
GACAAGATCACGGCCATAAAGGAGGGAGTCCAGGTACTTGAGGATTTCCT
CGAAAAGTTCGAGGCCGAGAATCGTATCAAGGACAATCGAGCATACTTGC
CACTCGCCGTGGTCACCAAACTGCCCGATCCCAAAGATGAGTTGGCTAAG
GAGTTTCTCGAAGCCTATGGCGGCTCCAAGGCCAAGGGTAACTACAAGCA
CCTGCGCACAATGTTCCCCAAAACGGATGAAAAGACCAGCTGGGATATTG
TGCGCAATCGTCAGCTGTCCAAGTTGCTGGAGCAGATTAAGAGTGAGGAG
GCCAAGCTCTTCGATGCAGAGACCGGAGCACCCACCGACCTGCACCTGCA
GTTGATCCACTGGGCATACAGTCCGCAGCCGGACAAGCTGAAGCAGTACA
TCGAAAAGCTGGCCAAGAAGACGCCCGAAAAGCGCAAGCAGGAGAGCAGC
AGCAGTGCCAGCGATTCCAGTGCCACCAGCCAGGATTCCGATGGCGAGGA
TAAGCCCAAAAGGAAGAAGAAGAGGGAGGAGGCAAGCTTTCTAGACCAT

BO07205.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:11:16
Subject Length Description Subject Range Query Range Score Percent Strand
Ude-RD 951 CG18410-PD 1..948 134..1081 4740 100 Plus
Ude-RC 951 CG18410-PC 1..948 134..1081 4740 100 Plus
Ude-RB 951 CG18410-PB 1..948 134..1081 4740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:17
Subject Length Description Subject Range Query Range Score Percent Strand
Ude-RC 1473 CG18410-RC 46..1111 16..1081 5315 99.9 Plus
Ude-RD 1517 CG18410-RD 1..1020 62..1081 5100 100 Plus
Ude-RB 1382 CG18410-RB 1..1020 62..1081 5100 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24797957..24798583 1081..455 3135 100 Minus
3R 32079331 3R 24799364..24799623 275..16 1285 99.6 Minus
3R 32079331 3R 24799127..24799307 456..276 905 100 Minus
Blast to na_te.dros performed 2014-11-26 16:11:15
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 3652..3822 968..803 123 58.5 Minus

BO07205.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:15 Download gff for BO07205.complete
Subject Subject Range Query Range Percent Splice Strand
CG18410-RA 47..1111 17..1083 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:54:23 Download gff for BO07205.complete
Subject Subject Range Query Range Percent Splice Strand
Ude-RC 47..1111 17..1083 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:07 Download gff for BO07205.complete
Subject Subject Range Query Range Percent Splice Strand
Ude-RC 47..1111 17..1083 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:07 Download gff for BO07205.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24797954..24798581 457..1083 99 <- Minus
3R 24799127..24799307 276..456 100 <- Minus
3R 24799364..24799622 17..275 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:54:23 Download gff for BO07205.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20623676..20624303 457..1083 99 <- Minus
arm_3R 20624849..20625029 276..456 100 <- Minus
arm_3R 20625086..20625344 17..275 99   Minus

BO07205.pep Sequence

Translation from 16 to 1099

> BO07205.pep
MIKCHMPSSWRRLRKISRILALTGSRQILTQVLATKGAAMAEGDSKFGFK
DMEKALETLKLLESHDMQYRKLTVRGLLGRAKRVLTMTKAEEKLKNINAA
IGVFEKWLEENGGGASSKNAKTESEDKVETVPGLGFKDKAAAEATLSILA
ERDPDYQRLAIKGLIGSSKRVLSGTKNEDKITAIKEGVQVLEDFLEKFEA
ENRIKDNRAYLPLAVVTKLPDPKDELAKEFLEAYGGSKAKGNYKHLRTMF
PKTDEKTSWDIVRNRQLSKLLEQIKSEEAKLFDAETGAPTDLHLQLIHWA
YSPQPDKLKQYIEKLAKKTPEKRKQESSSSASDSSATSQDSDGEDKPKRK
KKREEASFLDH

BO07205.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:50:11
Subject Length Description Subject Range Query Range Score Percent Strand
Ude-PD 316 CG18410-PD 1..316 40..355 1597 100 Plus
Ude-PC 316 CG18410-PC 1..316 40..355 1597 100 Plus
Ude-PB 316 CG18410-PB 1..316 40..355 1597 100 Plus