Clone BO07208 Report

Search the DGRC for BO07208

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:72
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG4991-RA
Protein status:BO07208.pep: validated full length
Sequenced Size:1411

Clone Sequence Records

BO07208.3prime Sequence

932 bp (825 high quality bases) assembled on 2005-12-04

> BO07208.3prime
ATGGTCTAGAAAGCTTGCCTTAAACTCCTTGACGATCTCCACGATGCTCT
GGTAGGTGCCAGTGACGATGCCCAGCACGGCCACCGTCAGGATGAGAATG
TTTTTGATGTAGGACCACACACCCAGTGCCTTGGGCACCTGCGCCCGCGT
CACGAAGTCGATCAGCACCGGAATCACAAAAGCCAGACAGGTGGAGCACA
GTGCTCCGATCAGCGAGATGAACAGATTGAGCTTGGGAACGACCAGCGCA
ACGCCAAATGTCATCATCACCATAAAGAAACGGAGGCACACCTGCGAGGT
AATGGGATACTTTTGAGTGCAGTTATTAGACCTCTTTAGTGGGGGCCACA
AAATCTTAATCATCACAAAGAACTGGATGGGGTAGCCCAGGAAAACGCCC
AAAGCAGCGATCACTTTCACCACCTGCGAAAAAACTTCCTCCACTACAAG
ATTTAGCGTTATGCTGCCGGCTACCTCCTCGCCCCATCGCACATAGCTCA
CGAATCCGGTGAAGATGAACAGGGCCGTGGTAAAGAACATCGTGGAGTTG
AGCACTCCGAACCGGGTGCTAAACTTCTCCGGTCGGCGCATCGAGTTCCG
CAGCGGCAGGATGAGGGCGATGCCCTCGTAAGAGAACAGAGCGGTACCAA
AGAACAGGGCCAACTGAGCTCCGCCAGTGAAGAGGTGCCTGTCGCCAACG
GACGGCATGGGTCCATCCGAGAAGGCTATGGTCAGGGTGGCAATCAAGCC
GAAGAGCAGCGCCACATTGGCAAACAGCGACACGGGCGAGATGTACTTCA
GGTTGGTCATCAGCGAGGGTATCATCGCCGGTAGCAGGGTGATCAGCATC
ACCATGCTCATGCTGATAACGATGCCGTTCTGCTGGAGGACCTGGTGCAG
ATTTTCCGTGATGAGGACAAAGTAGATGGCGC

BO07208.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4991-PB 1380 CG4991-RB 464..1377 932..19 4545 99.8 Minus
CG4991-PA 1380 CG4991-RA 464..1377 932..19 4545 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:08:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG4991-RE 2084 CG4991-RE 691..1604 932..19 4555 99.9 Minus
CG4991-RD 2012 CG4991-RD 619..1532 932..19 4555 99.9 Minus
CG4991-RF 2177 CG4991-RF 784..1697 932..19 4555 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17102902..17103400 932..434 2480 99.8 Minus
X 23542271 X 17103844..17104082 257..19 1195 100 Minus
X 23542271 X 17103509..17103684 433..258 880 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:08:33 has no hits.

BO07208.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:20 Download gff for BO07208.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4991-PB 464..1380 18..932 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:23 Download gff for BO07208.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4991-PA 464..1380 18..932 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:05:22 Download gff for BO07208.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4991-RF 784..1704 11..932 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:44 Download gff for BO07208.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4991-RF 784..1704 11..932 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:44 Download gff for BO07208.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17103844..17104089 11..257 98   Minus
X 17102902..17103400 434..932 99 -> Minus
X 17103509..17103684 258..433 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:05:22 Download gff for BO07208.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16996935..16997433 434..932 99 -> Minus
arm_X 16997542..16997717 258..433 100 -> Minus
arm_X 16997877..16998122 11..257 98   Minus

BO07208.5prime Sequence

834 bp (832 high quality bases) assembled on 2005-12-04

> BO07208.5prime
GAAGTTATCAGTCGACATGGGAAGAACACTGGAAATAACCGGAAGACAGA
ATGATAAGAGTCTGGAGAAGAATCCGGAGCGCTTCACGAAGAATGTGACG
GAGAAAGGCGCCGATCCTGAGAACGGAGACCCGGTGCGCAGGCGCGGCCA
TGAGACCAGCGAACTGGAGGCGGCTACGCATCTCTTCAAGGGCAGCGTCG
GTGCCGGACTCTTCGCCATGGGCGATTGCTTCAAGAACGGCGGATTGGCA
GGAGCAACCATCCTGCTGCCCATCATTGCGGTGATGTGCGTCCACTGCGA
GCGCATGCTGATCCGTGGTTCCGTGCTGGCCGTGGAGCGCACGCCCGGCG
TGGACTTTCTCGACTATCCGGAAACAGTGGAGAAGTGCTTCGAGCACGGG
CCACGCCCACTGCGAAAAATGTCGCGCGTAATGAAGCTGATCGTTGAAAT
GTTCCTCTGCGTCACGCAGTTTGGCTTCTGCGCCATCTACTTTGTCTTCA
TCACGGAAAATCTGCACCAGGTCCTCCAGCAGAACGGCATCGTTATCAGC
ATGAGCATGGTGATGCTGATCACCCTGCTACCGGCGATGATACCCTCGCT
GATGACCAACCTGAAGTACATCTCGCCCGTGTCGCTGTTTGCCAATGTGG
CGCTGCTCTTCGGCTTGATTGCCACCCTGACCATAGCCTTCTCGGATGGA
CCCATGCCGTCCGTTGGCGACAGGCACCTCTTCACTGGCGGAGCTCAGTT
GGCCCTGTTCTTTGGTACCGCTCTGTTCTCTTACGAGGGCATCGCCCTCA
TCCTGCCGCTGCGGAACTCGATGCGCCGACCGGA

BO07208.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG4991-PB 1380 CG4991-RB 1..818 17..834 4090 100 Plus
CG4991-PA 1380 CG4991-RA 1..818 17..834 4090 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:23:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG4991-RE 2084 CG4991-RE 224..1045 13..834 4095 99.9 Plus
CG4991-RD 2012 CG4991-RD 152..973 13..834 4095 99.9 Plus
CG4991-RF 2177 CG4991-RF 317..1138 13..834 4095 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:23:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17102435..17103256 13..834 4095 99.9 Plus
Blast to na_te.dros performed on 2015-02-11 23:23:11 has no hits.

BO07208.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:21 Download gff for BO07208.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4991-PB 1..817 17..833 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:24 Download gff for BO07208.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4991-PA 1..817 17..833 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:47:01 Download gff for BO07208.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4991-RF 317..1137 13..833 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:51:03 Download gff for BO07208.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4991-RF 317..1137 13..833 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:51:03 Download gff for BO07208.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17102435..17103255 13..833 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:47:01 Download gff for BO07208.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16996468..16997288 13..833 99   Plus

BO07208.complete Sequence

1411 bp (1411 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630702

> BO07208.complete
GAAGTTATCAGTCGACATGGGAAGAACACTGGAAATAACCGGAAGACAGA
ATGATAAGAGTCTGGAGAAGAATCCGGAGCGCTTCACGAAGAATGTGACG
GAGAAAGGCGCCGATCCTGAGAACGGAGACCCGGTGCGCAGGCGCGGCCA
TGAGACCAGCGAACTGGAGGCGGCTACGCATCTCTTCAAGGGCAGCGTCG
GTGCCGGACTCTTCGCCATGGGCGATTGCTTCAAGAACGGCGGATTGGCA
GGAGCAACCATCCTGCTGCCCATCATTGCGGTGATGTGCGTCCACTGCGA
GCGCATGCTGATCCGTGGTTCCGTGCTGGCCGTGGAGCGCACGCCCGGCG
TGGACTTTCTCGACTATCCGGAAACAGTGGAGAAGTGCTTCGAGCACGGG
CCACGCCCACTGCGAAAAATGTCGCGCGTAATGAAGCTGATCGTTGAAAT
GTTCCTCTGCGTCACGCAGTTTGGCTTCTGCGCCATCTACTTTGTCTTCA
TCACGGAAAATCTGCACCAGGTCCTCCAGCAGAACGGCATCGTTATCAGC
ATGAGCATGGTGATGCTGATCACCCTGCTACCGGCGATGATACCCTCGCT
GATGACCAACCTGAAGTACATCTCGCCCGTGTCGCTGTTTGCCAATGTGG
CGCTGCTCTTCGGCTTGATTGCCACCCTGACCATAGCCTTCTCGGATGGA
CCCATGCCGTCCGTTGGCGACAGGCACCTCTTCACTGGCGGAGCTCAGTT
GGCCCTGTTCTTTGGTACCGCTCTGTTCTCTTACGAGGGCATCGCCCTCA
TCCTGCCGCTGCGGAACTCGATGCGCCGACCGGAGAAGTTTAGCACCCGG
TTCGGAGTGCTCAACTCCACGATGTTCTTTACCACGGCCCTGTTCATCTT
CACCGGATTCGTGAGCTATGTGCGATGGGGCGAGGAGGTAGCCGGCAGCA
TAACGCTAAATCTTGTAGTGGAGGAAGTTTTTTCGCAGGTGGTGAAAGTG
ATCGCTGCTTTGGGCGTTTTCCTGGGCTACCCCATCCAGTTCTTTGTGAT
GATTAAGATTTTGTGGCCCCCACTAAAGAGGTCTAATAACTGCACTCAAA
AGTATCCCATTACCTCGCAGGTGTGCCTCCGTTTCTTTATGGTGATGATG
ACATTTGGCGTTGCGCTGGTCGTTCCCAAGCTCAATCTGTTCATCTCGCT
GATCGGAGCACTGTGCTCCACCTGTCTGGCTTTTGTGATTCCGGTGCTGA
TCGACTTCGTGACGCGGGCGCAGGTGCCCAAGGCACTGGGTGTGTGGTCC
TACATCAAAAACATTCTCATCCTGACGGTGGCCGTGCTGGGCATCGTCAC
TGGCACCTACCAGAGCATCGTGGAGATCGTCAAGGAGTTTAAGGCAAGCT
TTCTAGACCAT

BO07208.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:31:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG4991-RD 1491 CG4991-PD 108..1488 13..1393 6890 99.9 Plus
CG4991-RE 1380 CG4991-PE 1..1377 17..1393 6885 100 Plus
CG4991-RF 1380 CG4991-PF 1..1377 17..1393 6885 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:31:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG4991-RE 2084 CG4991-RE 224..1604 13..1393 6890 99.9 Plus
CG4991-RD 2012 CG4991-RD 152..1532 13..1393 6890 99.9 Plus
CG4991-RF 2177 CG4991-RF 317..1697 13..1393 6890 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17102435..17103400 13..978 4815 99.9 Plus
X 23542271 X 17103844..17104082 1155..1393 1195 100 Plus
X 23542271 X 17103509..17103684 979..1154 880 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:31:24 has no hits.

BO07208.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:40 Download gff for BO07208.complete
Subject Subject Range Query Range Percent Splice Strand
CG4991-RC 51..1434 13..1394 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:56 Download gff for BO07208.complete
Subject Subject Range Query Range Percent Splice Strand
CG4991-RC 51..1438 13..1401 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:13 Download gff for BO07208.complete
Subject Subject Range Query Range Percent Splice Strand
CG4991-RF 321..1697 17..1395 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:40 Download gff for BO07208.complete
Subject Subject Range Query Range Percent Splice Strand
CG4991-RC 51..1438 13..1401 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:23 Download gff for BO07208.complete
Subject Subject Range Query Range Percent Splice Strand
CG4991-RF 321..1697 17..1395 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:23 Download gff for BO07208.complete
Subject Subject Range Query Range Percent Splice Strand
X 17103844..17104082 1155..1395 99   Plus
X 17102439..17103400 17..978 100 -> Plus
X 17103509..17103684 979..1154 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:13 Download gff for BO07208.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16996472..16997433 17..978 100 -> Plus
arm_X 16997542..16997717 979..1154 100 -> Plus
arm_X 16997877..16998115 1155..1395 99   Plus

BO07208.pep Sequence

Translation from 16 to 1411

> BO07208.pep
MGRTLEITGRQNDKSLEKNPERFTKNVTEKGADPENGDPVRRRGHETSEL
EAATHLFKGSVGAGLFAMGDCFKNGGLAGATILLPIIAVMCVHCERMLIR
GSVLAVERTPGVDFLDYPETVEKCFEHGPRPLRKMSRVMKLIVEMFLCVT
QFGFCAIYFVFITENLHQVLQQNGIVISMSMVMLITLLPAMIPSLMTNLK
YISPVSLFANVALLFGLIATLTIAFSDGPMPSVGDRHLFTGGAQLALFFG
TALFSYEGIALILPLRNSMRRPEKFSTRFGVLNSTMFFTTALFIFTGFVS
YVRWGEEVAGSITLNLVVEEVFSQVVKVIAALGVFLGYPIQFFVMIKILW
PPLKRSNNCTQKYPITSQVCLRFFMVMMTFGVALVVPKLNLFISLIGALC
STCLAFVIPVLIDFVTRAQVPKALGVWSYIKNILILTVAVLGIVTGTYQS
IVEIVKEFKASFLDH

BO07208.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4991-PE 459 CG4991-PE 1..459 1..459 2342 100 Plus
CG4991-PD 496 CG4991-PD 38..496 1..459 2342 100 Plus
CG4991-PF 459 CG4991-PF 1..459 1..459 2342 100 Plus
CG4991-PA 459 CG4991-PA 1..459 1..459 2342 100 Plus
CG4991-PB 459 CG4991-PB 1..459 1..459 2342 100 Plus