Clone Sequence Records
BO07208.3prime Sequence
932 bp (825 high quality bases) assembled on 2005-12-04
> BO07208.3prime
ATGGTCTAGAAAGCTTGCCTTAAACTCCTTGACGATCTCCACGATGCTCT
GGTAGGTGCCAGTGACGATGCCCAGCACGGCCACCGTCAGGATGAGAATG
TTTTTGATGTAGGACCACACACCCAGTGCCTTGGGCACCTGCGCCCGCGT
CACGAAGTCGATCAGCACCGGAATCACAAAAGCCAGACAGGTGGAGCACA
GTGCTCCGATCAGCGAGATGAACAGATTGAGCTTGGGAACGACCAGCGCA
ACGCCAAATGTCATCATCACCATAAAGAAACGGAGGCACACCTGCGAGGT
AATGGGATACTTTTGAGTGCAGTTATTAGACCTCTTTAGTGGGGGCCACA
AAATCTTAATCATCACAAAGAACTGGATGGGGTAGCCCAGGAAAACGCCC
AAAGCAGCGATCACTTTCACCACCTGCGAAAAAACTTCCTCCACTACAAG
ATTTAGCGTTATGCTGCCGGCTACCTCCTCGCCCCATCGCACATAGCTCA
CGAATCCGGTGAAGATGAACAGGGCCGTGGTAAAGAACATCGTGGAGTTG
AGCACTCCGAACCGGGTGCTAAACTTCTCCGGTCGGCGCATCGAGTTCCG
CAGCGGCAGGATGAGGGCGATGCCCTCGTAAGAGAACAGAGCGGTACCAA
AGAACAGGGCCAACTGAGCTCCGCCAGTGAAGAGGTGCCTGTCGCCAACG
GACGGCATGGGTCCATCCGAGAAGGCTATGGTCAGGGTGGCAATCAAGCC
GAAGAGCAGCGCCACATTGGCAAACAGCGACACGGGCGAGATGTACTTCA
GGTTGGTCATCAGCGAGGGTATCATCGCCGGTAGCAGGGTGATCAGCATC
ACCATGCTCATGCTGATAACGATGCCGTTCTGCTGGAGGACCTGGTGCAG
ATTTTCCGTGATGAGGACAAAGTAGATGGCGC
BO07208.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4991-PB | 1380 | CG4991-RB | 464..1377 | 932..19 | 4545 | 99.8 | Minus |
CG4991-PA | 1380 | CG4991-RA | 464..1377 | 932..19 | 4545 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:08:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4991-RE | 2084 | CG4991-RE | 691..1604 | 932..19 | 4555 | 99.9 | Minus |
CG4991-RD | 2012 | CG4991-RD | 619..1532 | 932..19 | 4555 | 99.9 | Minus |
CG4991-RF | 2177 | CG4991-RF | 784..1697 | 932..19 | 4555 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:08:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17102902..17103400 | 932..434 | 2480 | 99.8 | Minus |
X | 23542271 | X | 17103844..17104082 | 257..19 | 1195 | 100 | Minus |
X | 23542271 | X | 17103509..17103684 | 433..258 | 880 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:08:33 has no hits.
BO07208.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:20 Download gff for
BO07208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4991-PB | 464..1380 | 18..932 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:23 Download gff for
BO07208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4991-PA | 464..1380 | 18..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:05:22 Download gff for
BO07208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4991-RF | 784..1704 | 11..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:44 Download gff for
BO07208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4991-RF | 784..1704 | 11..932 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:44 Download gff for
BO07208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17103844..17104089 | 11..257 | 98 | | Minus |
X | 17102902..17103400 | 434..932 | 99 | -> | Minus |
X | 17103509..17103684 | 258..433 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:05:22 Download gff for
BO07208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16996935..16997433 | 434..932 | 99 | -> | Minus |
arm_X | 16997542..16997717 | 258..433 | 100 | -> | Minus |
arm_X | 16997877..16998122 | 11..257 | 98 | | Minus |
BO07208.5prime Sequence
834 bp (832 high quality bases) assembled on 2005-12-04
> BO07208.5prime
GAAGTTATCAGTCGACATGGGAAGAACACTGGAAATAACCGGAAGACAGA
ATGATAAGAGTCTGGAGAAGAATCCGGAGCGCTTCACGAAGAATGTGACG
GAGAAAGGCGCCGATCCTGAGAACGGAGACCCGGTGCGCAGGCGCGGCCA
TGAGACCAGCGAACTGGAGGCGGCTACGCATCTCTTCAAGGGCAGCGTCG
GTGCCGGACTCTTCGCCATGGGCGATTGCTTCAAGAACGGCGGATTGGCA
GGAGCAACCATCCTGCTGCCCATCATTGCGGTGATGTGCGTCCACTGCGA
GCGCATGCTGATCCGTGGTTCCGTGCTGGCCGTGGAGCGCACGCCCGGCG
TGGACTTTCTCGACTATCCGGAAACAGTGGAGAAGTGCTTCGAGCACGGG
CCACGCCCACTGCGAAAAATGTCGCGCGTAATGAAGCTGATCGTTGAAAT
GTTCCTCTGCGTCACGCAGTTTGGCTTCTGCGCCATCTACTTTGTCTTCA
TCACGGAAAATCTGCACCAGGTCCTCCAGCAGAACGGCATCGTTATCAGC
ATGAGCATGGTGATGCTGATCACCCTGCTACCGGCGATGATACCCTCGCT
GATGACCAACCTGAAGTACATCTCGCCCGTGTCGCTGTTTGCCAATGTGG
CGCTGCTCTTCGGCTTGATTGCCACCCTGACCATAGCCTTCTCGGATGGA
CCCATGCCGTCCGTTGGCGACAGGCACCTCTTCACTGGCGGAGCTCAGTT
GGCCCTGTTCTTTGGTACCGCTCTGTTCTCTTACGAGGGCATCGCCCTCA
TCCTGCCGCTGCGGAACTCGATGCGCCGACCGGA
BO07208.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4991-PB | 1380 | CG4991-RB | 1..818 | 17..834 | 4090 | 100 | Plus |
CG4991-PA | 1380 | CG4991-RA | 1..818 | 17..834 | 4090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:23:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4991-RE | 2084 | CG4991-RE | 224..1045 | 13..834 | 4095 | 99.9 | Plus |
CG4991-RD | 2012 | CG4991-RD | 152..973 | 13..834 | 4095 | 99.9 | Plus |
CG4991-RF | 2177 | CG4991-RF | 317..1138 | 13..834 | 4095 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:23:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17102435..17103256 | 13..834 | 4095 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:23:11 has no hits.
BO07208.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:21 Download gff for
BO07208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4991-PB | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:24 Download gff for
BO07208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4991-PA | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:47:01 Download gff for
BO07208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4991-RF | 317..1137 | 13..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:51:03 Download gff for
BO07208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4991-RF | 317..1137 | 13..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:51:03 Download gff for
BO07208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17102435..17103255 | 13..833 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:47:01 Download gff for
BO07208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16996468..16997288 | 13..833 | 99 | | Plus |
BO07208.complete Sequence
1411 bp (1411 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630702
> BO07208.complete
GAAGTTATCAGTCGACATGGGAAGAACACTGGAAATAACCGGAAGACAGA
ATGATAAGAGTCTGGAGAAGAATCCGGAGCGCTTCACGAAGAATGTGACG
GAGAAAGGCGCCGATCCTGAGAACGGAGACCCGGTGCGCAGGCGCGGCCA
TGAGACCAGCGAACTGGAGGCGGCTACGCATCTCTTCAAGGGCAGCGTCG
GTGCCGGACTCTTCGCCATGGGCGATTGCTTCAAGAACGGCGGATTGGCA
GGAGCAACCATCCTGCTGCCCATCATTGCGGTGATGTGCGTCCACTGCGA
GCGCATGCTGATCCGTGGTTCCGTGCTGGCCGTGGAGCGCACGCCCGGCG
TGGACTTTCTCGACTATCCGGAAACAGTGGAGAAGTGCTTCGAGCACGGG
CCACGCCCACTGCGAAAAATGTCGCGCGTAATGAAGCTGATCGTTGAAAT
GTTCCTCTGCGTCACGCAGTTTGGCTTCTGCGCCATCTACTTTGTCTTCA
TCACGGAAAATCTGCACCAGGTCCTCCAGCAGAACGGCATCGTTATCAGC
ATGAGCATGGTGATGCTGATCACCCTGCTACCGGCGATGATACCCTCGCT
GATGACCAACCTGAAGTACATCTCGCCCGTGTCGCTGTTTGCCAATGTGG
CGCTGCTCTTCGGCTTGATTGCCACCCTGACCATAGCCTTCTCGGATGGA
CCCATGCCGTCCGTTGGCGACAGGCACCTCTTCACTGGCGGAGCTCAGTT
GGCCCTGTTCTTTGGTACCGCTCTGTTCTCTTACGAGGGCATCGCCCTCA
TCCTGCCGCTGCGGAACTCGATGCGCCGACCGGAGAAGTTTAGCACCCGG
TTCGGAGTGCTCAACTCCACGATGTTCTTTACCACGGCCCTGTTCATCTT
CACCGGATTCGTGAGCTATGTGCGATGGGGCGAGGAGGTAGCCGGCAGCA
TAACGCTAAATCTTGTAGTGGAGGAAGTTTTTTCGCAGGTGGTGAAAGTG
ATCGCTGCTTTGGGCGTTTTCCTGGGCTACCCCATCCAGTTCTTTGTGAT
GATTAAGATTTTGTGGCCCCCACTAAAGAGGTCTAATAACTGCACTCAAA
AGTATCCCATTACCTCGCAGGTGTGCCTCCGTTTCTTTATGGTGATGATG
ACATTTGGCGTTGCGCTGGTCGTTCCCAAGCTCAATCTGTTCATCTCGCT
GATCGGAGCACTGTGCTCCACCTGTCTGGCTTTTGTGATTCCGGTGCTGA
TCGACTTCGTGACGCGGGCGCAGGTGCCCAAGGCACTGGGTGTGTGGTCC
TACATCAAAAACATTCTCATCCTGACGGTGGCCGTGCTGGGCATCGTCAC
TGGCACCTACCAGAGCATCGTGGAGATCGTCAAGGAGTTTAAGGCAAGCT
TTCTAGACCAT
BO07208.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:31:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4991-RD | 1491 | CG4991-PD | 108..1488 | 13..1393 | 6890 | 99.9 | Plus |
CG4991-RE | 1380 | CG4991-PE | 1..1377 | 17..1393 | 6885 | 100 | Plus |
CG4991-RF | 1380 | CG4991-PF | 1..1377 | 17..1393 | 6885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:31:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4991-RE | 2084 | CG4991-RE | 224..1604 | 13..1393 | 6890 | 99.9 | Plus |
CG4991-RD | 2012 | CG4991-RD | 152..1532 | 13..1393 | 6890 | 99.9 | Plus |
CG4991-RF | 2177 | CG4991-RF | 317..1697 | 13..1393 | 6890 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:31:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17102435..17103400 | 13..978 | 4815 | 99.9 | Plus |
X | 23542271 | X | 17103844..17104082 | 1155..1393 | 1195 | 100 | Plus |
X | 23542271 | X | 17103509..17103684 | 979..1154 | 880 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:31:24 has no hits.
BO07208.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:40 Download gff for
BO07208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4991-RC | 51..1434 | 13..1394 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:56 Download gff for
BO07208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4991-RC | 51..1438 | 13..1401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:13 Download gff for
BO07208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4991-RF | 321..1697 | 17..1395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:40 Download gff for
BO07208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4991-RC | 51..1438 | 13..1401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:23 Download gff for
BO07208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4991-RF | 321..1697 | 17..1395 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:23 Download gff for
BO07208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17103844..17104082 | 1155..1395 | 99 | | Plus |
X | 17102439..17103400 | 17..978 | 100 | -> | Plus |
X | 17103509..17103684 | 979..1154 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:13 Download gff for
BO07208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16996472..16997433 | 17..978 | 100 | -> | Plus |
arm_X | 16997542..16997717 | 979..1154 | 100 | -> | Plus |
arm_X | 16997877..16998115 | 1155..1395 | 99 | | Plus |
BO07208.pep Sequence
Translation from 16 to 1411
> BO07208.pep
MGRTLEITGRQNDKSLEKNPERFTKNVTEKGADPENGDPVRRRGHETSEL
EAATHLFKGSVGAGLFAMGDCFKNGGLAGATILLPIIAVMCVHCERMLIR
GSVLAVERTPGVDFLDYPETVEKCFEHGPRPLRKMSRVMKLIVEMFLCVT
QFGFCAIYFVFITENLHQVLQQNGIVISMSMVMLITLLPAMIPSLMTNLK
YISPVSLFANVALLFGLIATLTIAFSDGPMPSVGDRHLFTGGAQLALFFG
TALFSYEGIALILPLRNSMRRPEKFSTRFGVLNSTMFFTTALFIFTGFVS
YVRWGEEVAGSITLNLVVEEVFSQVVKVIAALGVFLGYPIQFFVMIKILW
PPLKRSNNCTQKYPITSQVCLRFFMVMMTFGVALVVPKLNLFISLIGALC
STCLAFVIPVLIDFVTRAQVPKALGVWSYIKNILILTVAVLGIVTGTYQS
IVEIVKEFKASFLDH
BO07208.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4991-PE | 459 | CG4991-PE | 1..459 | 1..459 | 2342 | 100 | Plus |
CG4991-PD | 496 | CG4991-PD | 38..496 | 1..459 | 2342 | 100 | Plus |
CG4991-PF | 459 | CG4991-PF | 1..459 | 1..459 | 2342 | 100 | Plus |
CG4991-PA | 459 | CG4991-PA | 1..459 | 1..459 | 2342 | 100 | Plus |
CG4991-PB | 459 | CG4991-PB | 1..459 | 1..459 | 2342 | 100 | Plus |