Clone Sequence Records
BO07210.3prime Sequence
901 bp (821 high quality bases) assembled on 2005-12-04
> BO07210.3prime
ATGGTCTAGAAAGCTTGCTTTACGCCCCTTCCCCTTGCGACCCTTCGAAC
CCTTTTCGCGCCTCTTCTTTGCATCCATTGACCGCTTGTCCTTCTTCTCG
CGCGGATCGACGACCTTATAGCGACCCTTGACGCCAGCTGGACGACGTGC
GCGTCGAGCTGCTGTCTGCTTCTTGGCCACCACATATGTGACCTCCTTCT
TCTTCTCCTGAGCCTTCTTGTACACCTTCTTCAGTTGCTTGGACTTCTCG
TGGTTGGTGGCATCGCTGTTCTCCATAATCTTTTCGGCCATCTTCTTAGC
CTTGGCCAAGCGTTTCGTGGCACGACGATGCTTGCGCGCCTTGGCCTCCA
TGACCTTCTTGATCGGACGCACGTTCACCTCCTGCAACTTGCGCTGGTAC
TCGGCGGTCAGCTCCTTCGGCACCGGTGTTGGCTTGGTCATATGCTCGTC
CTCATCGAGCTTGAACCAAACGGGAACGTTCTCATCGTTGAAAGCGTAGC
GATTCCAGGCTGCGTCGATCAAGTCACGGCGTGTCTTCTTGCTGCGTGTC
AGCAGTGCGCCCAAAGCCATTTCGTTTTCGGACAGGCGAACCTTCTTGGC
ATTTGTACCTGCAGCTGGCTGTTCGCCGTCGCTATCCTCGTTAGCGTCAT
CCTCGGATTCGGATGACTCTGAGCTGCTGTCTTTAGTTGCGGTCTCATGG
CGTGCACGACGTTTGGCCTTCTTACCCTGGACAACCTCCTCGTTGGCGTC
CGGCGTTAGGGTGCTCTCACCCAGAACGGCGACACCCTTGGCCTTGAATT
CCTTGGCCAGATTGTTCAGATCGTAGGTTTCCTCGTCGTCATCCGACTGG
ATATTCTGTAGTACATCCTTCTCGTACCACAGCTGTACGCGTTGCTCTCG
C
BO07210.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8939-PA | 2454 | CG8939-RA | 1569..2451 | 901..19 | 4415 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:09:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8939-RA | 2622 | CG8939-RA | 1677..2559 | 901..19 | 4415 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:09:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15999043..15999635 | 611..19 | 2965 | 100 | Minus |
| X | 23542271 | X | 15998692..15998986 | 901..607 | 1475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:09:54 has no hits.
BO07210.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:23 Download gff for
BO07210.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8939-PA | 1569..2454 | 15..901 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:28 Download gff for
BO07210.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8939-PA | 1569..2454 | 15..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:05:25 Download gff for
BO07210.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8939-RA | 1677..2562 | 15..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:02 Download gff for
BO07210.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8939-RA | 1677..2562 | 15..901 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:02 Download gff for
BO07210.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15998692..15998984 | 609..901 | 100 | -> | Minus |
| X | 15999046..15999638 | 15..608 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:05:25 Download gff for
BO07210.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15892725..15893017 | 609..901 | 100 | -> | Minus |
| arm_X | 15893079..15893671 | 15..608 | 99 | | Minus |
BO07210.5prime Sequence
880 bp (720 high quality bases) assembled on 2005-12-04
> BO07210.5prime
GAAGTTATCAGTCGACATGGGCAAGAAGACGAAAGTTGGAAAGACGCGCA
AGGATAAGTTCTACCAGTTGGCCAAGGAGACGGGCCTGCGATCGCGTGCC
GCCTTCAAATTGATCCAGCTGAATCGCAAATTCGGTTTCCTCCAACAATC
GCAAGTATGTTTGGATTTGTGCGCAGCTCCCGGTGGCTGGATGCAGGTGG
CCAAGCAGAATATGCCGGTGTCCAGCATTGTGATCGGCGTGGATCTCTTT
CCCATCCGTCCCATTGCCGGCTGCATTGGTCTCGTCGAGGACATCACCAC
CGAGAAGTGCCGCCAATCGCTGACCAAGGAGCTGCAATCGTGGAAGGCCG
ATGTTGTGCTCCACGACGGTGCTCCCAATGTGGGTAGGAACTGGCTGTAC
GATGCCTATCAGCAGATCTGTCTCACCCTCAACGCGCTCAAGTTGAGCAC
ACAGTTTCTGCGCAACGGCGGCTGGTTTGTGACGAAGGTTTTCCGCTCCA
AGGATTACAATGCCCTGCTCTGGGTGCTCAAGCAGCTGTTCAAGAAGGTG
CACGCCACCAAGCCGAGTGCGTCGCGTAAGGAATCCGCCGAGATATTCGT
CGTCTGTCAGGGCTACCTGGCGCCCGATCACATTGATCCCCGTCTCCTGG
ACTCGAAGTATGTGTTCGAGGAGCTGGATCTCGATGCCAAAAAGAAGAGC
AGCCTGCTGCATCCCGAANAGCAAAAGCGCATCAAGGCCGAGGGCTATAC
GGCCCAGGATATTGCGCTGCGCAACGATCTGGCTGCCACAGAGTTCCTGA
AGGCTGAAAATGCACTGGCTGCGCTGCAGGGCATCGGTTCGATTCGCATC
GATGATCAGCGCATTGCCCATCACAAGAAG
BO07210.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8939-PA | 2454 | CG8939-RA | 1..864 | 17..880 | 4276 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:54:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8939-RA | 2622 | CG8939-RA | 109..972 | 17..880 | 4294 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:54:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15997124..15997987 | 17..880 | 4294 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-01-30 16:54:51 has no hits.
BO07210.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:24 Download gff for
BO07210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8939-PA | 1..864 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:29 Download gff for
BO07210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8939-PA | 1..864 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 18:59:46 Download gff for
BO07210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8939-RA | 104..972 | 9..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:24:01 Download gff for
BO07210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8939-RA | 104..972 | 9..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:24:01 Download gff for
BO07210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15997119..15997987 | 9..880 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 18:59:46 Download gff for
BO07210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15891152..15892020 | 9..880 | 99 | | Plus |
BO07210.complete Sequence
2485 bp assembled on 2008-08-14
GenBank Submission: FJ630703
> BO07210.complete
GAAGTTATCAGTCGACATGGGCAAGAAGACGAAAGTTGGAAAGACGCGCA
AGGATAAGTTCTACCAGTTGGCCAAGGAGACGGGCCTGCGATCGCGTGCC
GCCTTCAAATTGATCCAGCTGAATCGCAAATTCGGTTTCCTCCAACAATC
GCAAGTATGTTTGGATTTGTGCGCAGCTCCCGGTGGCTGGATGCAGGTGG
CCAAGCAGAATATGCCGGTGTCCAGCATTGTGATCGGCGTGGATCTCTTT
CCCATCCGTCCCATTGCCGGCTGCATTGGTCTCGTCGAGGACATCACCAC
CGAGAAGTGCCGCCAATCGCTGACCAAGGAGCTGCAATCGTGGAAGGCCG
ATGTTGTGCTCCACGACGGTGCTCCCAATGTGGGTAGGAACTGGCTGTAC
GATGCCTATCAGCAGATCTGTCTCACCCTCAACGCGCTCAAGTTGAGCAC
ACAGTTTCTGCGCAACGGCGGCTGGTTTGTGACGAAGGTTTTCCGCTCCA
AGGATTACAATGCCCTGCTCTGGGTGCTCAAGCAGCTGTTCAAGAAGGTG
CACGCCACCAAGCCGAGTGCGTCGCGTAAGGAATCCGCCGAGATATTCGT
CGTCTGTCAGGGCTACCTGGCGCCCGATCACATTGATCCCCGTCTCCTGG
ACTCGAAGTATGTGTTCGAGGAGCTGGATCTCGATGCCAAAAAGAAGAGC
AGCCTGCTGCATCCCGAAAAGCAAAAGCGCATCAAGGCCGAGGGCTATAC
GGCCCAGGATATTGCGCTGCGCAACGATCTGGCTGCCACAGAGTTCCTGA
AGGCTGAAAATGCACTGGCTGCGCTGCAGGGCATCGGTTCGATTCGCATC
GATGATCAGCGCATTGCCAATCACAAGAAGACCACGCCAGAGATTCTCGA
GTGCTGCAAGGATCTGAAGGTATTGGGCCGCAAGGATATCAAGGGTCTCG
TGCAATGGTGGAAGGATGTTAGGGAGTTGTTCGTTGAAAAGGAAACCCCA
CTGGTCGTCGGCAATGCCGCAGATGAGAAGCCCAAGCCATTGACGCAAGC
GGAAATCGAGGACATGGAAGATGCCGAGCTGCAAACGCAAATTGAGACAA
TTGTCGAAGAGGAGAAGAAGGACTTGAAGCGTAAGCGTAAGAAGACGCTC
AAGACCAAGGCGAAATTGCACGAGAAGATGAACCTTAATATGGTGATCAA
GGGAGACGATGGTCCGGTCGAGGAAATGGAGCACGAAATCTTTGACCTCA
AGAATATTCGCACCTCTGCCGAGCTTGACGAGCTGCTAGACGTGCAACCC
GATTTTGCTGTCGATGAATCGCAGCCCGAGGAAACAAAGCTGCCAAAATA
CAAGTATTTCGACAAGGATGAGGGCAACATCAACGATGATCTAAACTATG
ACGATGACAATGATGAGGAGCAAAGCGAGGCCTCCGACGACGAGGATCAA
ATCAATGATAAGCAGGGCCTGGGCCTCAGTGACGACGACAATGATGAGGG
CAATGCAAAGGGCAAAAACAAGAGAAAGAAACGCTCCGAGAATCCGCTGA
TTAAATCCAATGATTTCCGTGACAAAAACACCAAGCGAGAGCAACGCGTA
CAGCTGTGGTACGAGAAGGATGTACTACAGAATATCCAGTCGGATGACGA
CGAGGAAACCTACGATCTGAACAATCTGGCCAAGGAATTCAAGGCCAAGG
GTGTCGCCGTTCTGGGTGAGAGCACCCTAACGCCGGACGCCAACGAGGAG
GTTGTCCAGGGTAAGAAGGCCAAACGTCGTGCACGCCATGAGACCGCAAC
TAAAGACAGCAGCTCAGAGTCATCCGAATCCGAGGATGACGCTAACGAGG
ATAGCGACGGCGAACAGCCAGCTGCAGGTACAAATGCCAAGAAGGTTCGC
CTGTCCGAAAACGAAATGGCTTTGGGCGCACTGCTGACACGCAGCAAGAA
GACACGCCGTGACTTGATCGACGCAGCCTGGAATCGCTACGCTTTCAACG
ATGAGAACGTTCCCGTTTGGTTCAAGCTCGATGAGGACGAGCATATGACC
AAGCCAACACCGGTGCCGAAGGAGCTGACCGCCGAGTACCAGCGCAAGTT
GCAGGAGGTGAACGTGCGTCCGATCAAGAAGGTCATGGAGGCCAAGGCGC
GCAAGCATCGTCGTGCCACGAAACGCTTGGCCAAGGCTAAGAAGATGGCC
GAAAAGATTATGGAGAACAGCGATGCCACCAACCACGAGAAGTCCAAGCA
ACTGAAGAAGGTGTACAAGAAGGCTCAGGAGAAGAAGAAGGAGGTCACAT
ATGTGGTGGCCAAGAAGCAGACAGCAGCTCGACGCGCACGTCGTCCAGCT
GGCGTCAAGGGTCGCTATAAGGTCGTCGATCCGCGCGAGAAGAAGGACAA
GCGGTCAATGGATGCAAAGAAGAGGCGCGAAAAGGGTTCGAAGGGTCGCA
AGGGGAAGGGGCGTAAAGCAAGCTTTCTAGACCAT
BO07210.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:52:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8939-RA | 2454 | CG8939-PA | 1..2451 | 17..2467 | 12255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:52:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8939-RA | 2622 | CG8939-RA | 109..2559 | 17..2467 | 12255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:52:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15997124..15998986 | 17..1879 | 9315 | 100 | Plus |
| X | 23542271 | X | 15999043..15999635 | 1875..2467 | 2965 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:52:17 has no hits.
BO07210.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:43:07 Download gff for
BO07210.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8939-RA | 83..2541 | 9..2471 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:03 Download gff for
BO07210.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8939-RA | 109..2559 | 17..2469 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:49 Download gff for
BO07210.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8939-RA | 88..2538 | 17..2469 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:04 Download gff for
BO07210.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8939-RA | 109..2559 | 17..2469 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:04 Download gff for
BO07210.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15997124..15998984 | 17..1877 | 100 | -> | Plus |
| X | 15999046..15999635 | 1878..2469 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:03 Download gff for
BO07210.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15891157..15893017 | 17..1877 | 100 | -> | Plus |
| arm_X | 15893079..15893668 | 1878..2469 | 99 | | Plus |
BO07210.pep Sequence
Translation from 16 to 2485
> BO07210.pep
MGKKTKVGKTRKDKFYQLAKETGLRSRAAFKLIQLNRKFGFLQQSQVCLD
LCAAPGGWMQVAKQNMPVSSIVIGVDLFPIRPIAGCIGLVEDITTEKCRQ
SLTKELQSWKADVVLHDGAPNVGRNWLYDAYQQICLTLNALKLSTQFLRN
GGWFVTKVFRSKDYNALLWVLKQLFKKVHATKPSASRKESAEIFVVCQGY
LAPDHIDPRLLDSKYVFEELDLDAKKKSSLLHPEKQKRIKAEGYTAQDIA
LRNDLAATEFLKAENALAALQGIGSIRIDDQRIANHKKTTPEILECCKDL
KVLGRKDIKGLVQWWKDVRELFVEKETPLVVGNAADEKPKPLTQAEIEDM
EDAELQTQIETIVEEEKKDLKRKRKKTLKTKAKLHEKMNLNMVIKGDDGP
VEEMEHEIFDLKNIRTSAELDELLDVQPDFAVDESQPEETKLPKYKYFDK
DEGNINDDLNYDDDNDEEQSEASDDEDQINDKQGLGLSDDDNDEGNAKGK
NKRKKRSENPLIKSNDFRDKNTKREQRVQLWYEKDVLQNIQSDDDEETYD
LNNLAKEFKAKGVAVLGESTLTPDANEEVVQGKKAKRRARHETATKDSSS
ESSESEDDANEDSDGEQPAAGTNAKKVRLSENEMALGALLTRSKKTRRDL
IDAAWNRYAFNDENVPVWFKLDEDEHMTKPTPVPKELTAEYQRKLQEVNV
RPIKKVMEAKARKHRRATKRLAKAKKMAEKIMENSDATNHEKSKQLKKVY
KKAQEKKKEVTYVVAKKQTAARRARRPAGVKGRYKVVDPREKKDKRSMDA
KKRREKGSKGRKGKGRKASFLDH
BO07210.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8939-PA | 817 | CG8939-PA | 1..817 | 1..817 | 4210 | 100 | Plus |
| CG7009-PA | 320 | CG7009-PA | 1..234 | 7..229 | 346 | 38.5 | Plus |
| CG5220-PA | 302 | CG5220-PA | 1..219 | 7..212 | 315 | 36.1 | Plus |
| CG11447-PA | 250 | CG11447-PA | 48..244 | 13..200 | 200 | 29.9 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 4240..4822 | 213..809 | 180 | 22 | Plus |
