Clone Sequence Records
BO07211.3prime Sequence
945 bp (910 high quality bases) assembled on 2005-12-04
> BO07211.3prime
ATGGTCTAGAAAGCTTGCAGAGCAAGATCCTTTACTCTTAATCGTCACAC
TTATATTGAGGCATGACGAATAGCACTGCAGTTGGGTTTCGCCCGTGTAC
ATGTATCCGTCGGATCCACAGATTATTTCATCGTTTTCATCGTACACATT
AGCACATATCTTCTCGCAGTAGTTTTCCGTGTCCTTTGGATCGTCAGGAG
TAGCTGAACTCGTCACAGTGGGCACCTTTGGAATATCTTGCTGCTTTCCA
CTTTCAGTGTCGGAACTATCCTCTGGGTCATCGGTGTATTCCTTAATGGG
CTTGCTGAGTTCAATCTTCGGGGCAGGAGATTTCGCGGGCTCGCGGGGAG
CTTGGGCCACGGTTTCGTAGTAGTACTGATTGGCTTGCGGGGCTTGGGTG
TACTTCATCGATCCCCTTATGGCATCTTGCTCGGTGAACTCGAATCGCAG
AGGCTCCGGGGTAAAGCTCTTGTGGGTCTTGGCGAGGTGCTGGCTCTTCG
ACGGCGATTGAGTGGTGGTCTGGACCGCCATGGGAGTAGAGACCACATGC
TTAACGGCTTTGTTGCCGTCGGACTTGACAACGAAGACATCCTGACCTGC
CTGGTAACTGCCGCGAACCACTGCGGAATTCGCAGGAGCGGGATCTTGCT
GGTAGAACAAGTCGGACACTTGTATGGGCTCATTGTAACTGGAGGAGACT
GAGTTGTCTAGGCCAGCAGTTTTGTAGGGAACATGTTGCTGCAGCGCTTG
TTGCTGCTGCGGCTGCTGGTGCTGCGGTTGCTGATGCTGCTGCTGTTGTT
GCTGATACAGTTGCTGCTGCTGCTGCTGTCTGTATTGCTGTGGATATTGG
TGGAGCAGCTTCTGCTGGTCCCGCTCGGCGTCCAGTTTCTTGAAGTCAGG
ATCCCTCTTGGGCAGAAAGTACTCGTTGGTGCTCATGAATTGCAG
BO07211.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7173-PA | 1695 | CG7173-RA | 766..1692 | 945..19 | 4610 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:41:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7173-RA | 2439 | CG7173-RA | 1232..2158 | 945..19 | 4620 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:41:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21556291..21556995 | 241..945 | 3510 | 99.9 | Plus |
| 3L | 28110227 | 3L | 21555750..21555944 | 49..243 | 975 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:41:05 has no hits.
BO07211.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:25 Download gff for
BO07211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7173-PA | 766..1695 | 15..945 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:31 Download gff for
BO07211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7173-PA | 766..1695 | 15..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:23:56 Download gff for
BO07211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7173-RA | 1232..2164 | 12..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:44:33 Download gff for
BO07211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7173-RA | 1232..2164 | 12..945 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:44:33 Download gff for
BO07211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21555648..21555685 | 12..50 | 92 | <- | Plus |
| 3L | 21555752..21555941 | 51..240 | 100 | <- | Plus |
| 3L | 21556291..21556995 | 241..945 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:23:56 Download gff for
BO07211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21548748..21548785 | 12..50 | 92 | <- | Plus |
| arm_3L | 21548852..21549041 | 51..240 | 100 | <- | Plus |
| arm_3L | 21549391..21550095 | 241..945 | 99 | | Plus |
BO07211.5prime Sequence
946 bp (812 high quality bases) assembled on 2005-12-04
> BO07211.5prime
GAAGTTATCAGTCGACATGACTCAGAGTCCGCTTAAGTTGGCCCCCATTT
TGGAGGCCCTAGTTCTGATAGTGGTCCTAATCAACCAAGTGCAGTGCGGT
GAGAATGATATGAGACAAGCGCGCATAAGGCAGTTTCTGAGTGAGAACCA
GCCCCTGGCCCAGCACCATATCAAGCACAATCGGCCGCCGGGTCCCGGAC
AACTGCCCCGGATAAGATCGCGATCGGATAACCTGGCCATGCTTTCTGGT
GGCTCCAACAAGTTCTTGCGGTCGCCGCAACCTGCCACTGCGCAGCACAT
CATGCGTCGCGAGCAGTTCGGGAACTTTCCTGCGAACGACCAGCTCAGGA
GGTACCAGTTCGACCAGAGTCAGCAGGGCAGATTCGCCCACGTAAAGGAC
ACTCCGGTGCTAGATGTGGGCAAAAACCAGTTCCCACTCCAGTATGTCTC
CGAGCAGTACATTCAGAACTTCAAGTCCTCGCCGCGCTTCAATGGCAATG
TGATCATGAAGGACACCAAGCCAGTGTACGCACCCATCCAACAGCATGCG
ATTCCCGTCCAGGCCTCCCAGTACCTGCACTATCCCAAGCTCTTCGGACA
GCAGGGATCTCCCAGTTTCAGTGTTGTCCCTACCCAGCAAACTGCTCTCC
AAAACAGCCAGTTTCCCCAGGATCCAAATAGCTACTCTGTCTACGAGGAT
ACCGATATACCTGCGAAGCAGGCGGTAAACTTTCGCCAGGCAGTGCCACC
ACCAAAGGAGTCCAGGGAGGCGCAGGACTACCTGCAATTCATGAGCACCA
ACGAGTACTTCCTGCCCCAGAGGGATCCTGACTTCAAGAAACTGGACGCC
GAGCGGGACCAGCAGAAGCTGCTCCACCAATATCCACAGCAATACAGACA
GCAGCAGCAGCAGCAACTGTATCAGCAACAACAGCAGCAGCATCAG
BO07211.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7173-PA | 1695 | CG7173-RA | 1..930 | 17..946 | 4625 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:30:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7173-RA | 2439 | CG7173-RA | 467..1396 | 17..946 | 4635 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:29:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21556831..21557760 | 946..17 | 4635 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-09 19:30:04 has no hits.
BO07211.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:26 Download gff for
BO07211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7173-PA | 1..930 | 17..946 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:32 Download gff for
BO07211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7173-PA | 1..930 | 17..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:08:23 Download gff for
BO07211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7173-RA | 467..1396 | 17..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:19:48 Download gff for
BO07211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7173-RA | 467..1396 | 17..946 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:19:48 Download gff for
BO07211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21556831..21557760 | 17..946 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:08:23 Download gff for
BO07211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21549931..21550860 | 17..946 | 99 | | Minus |
BO07211.complete Sequence
1726 bp (1726 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630704
> BO07211.complete
GAAGTTATCAGTCGACATGACTCAGAGTCCGCTTAAGTTGGCCCCCATTT
TGGAGGCCCTAGTTCTGATAGTGGTCCTAATCAACCAAGTGCAGTGCGGT
GAGAATGATATGAGACAAGCGCGCATAAGGCAGTTTCTGAGTGAGAACCA
GCCCCTGGCCCAGCACCATATCAAGCACAATCGGCCGCCGGGTCCCGGAC
AACTGCCCCGGATAAGATCGCGATCGGATAACCTGGCCATGCTTTCTGGT
GGCTCCAACAAGTTCTTGCGGTCGCCGCAACCTGCCACTGCGCAGCACAT
CATGCGTCGCGAGCAGTTCGGGAACTTTCCTGCGAACGACCAGCTCAGGA
GGTACCAGTTCGACCAGAGTCAGCAGGGCAGATTCGCCCACGTAAAGGAC
ACTCCGGTGCTAGATGTGGGCAAAAACCAGTTCCCACTCCAGTATGTCTC
CGAGCAGTACATTCAGAACTTCAAGTCCTCGCCGCGCTTCAATGGCAATG
TGATCATGAAGGACACCAAGCCAGTGTACGCACCCATCCAACAGCATGCG
ATTCCCGTCCAGGCCTCCCAGTACCTGCACTATCCCAAGCTCTTCGGACA
GCAGGGATCTCCCAGTTTCAGTGTTGTCCCTACCCAGCAAACTGCTCTCC
AAAACAGCCAGTTTCCCCAGGATCCAAATAGCTACTCTGTCTACGAGGAT
ACCGATATACCTGCGAAGCAGGCGGTAAACTTTCGCCAGGCAGTGCCACC
ACCAAAGGAGTCCAGGGAGGCGCAGGACTACCTGCAATTCATGAGCACCA
ACGAGTACTTCCTGCCCAAGAGGGATCCTGACTTCAAGAAACTGGACGCC
GAGCGGGACCAGCAGAAGCTGCTCCACCAATATCCACAGCAATACAGACA
GCAGCAGCAGCAGCAACTGTATCAGCAACAACAGCAGCAGCATCAGCAAC
CGCAGCACCAGCAGCCGCAGCAGCAACAAGCGCTGCAGCAACATGTTCCC
TACAAAACTGCTGGCCTAGACAACTCAGTCTCCTCCAGTTACAATGAGCC
CATACAAGTGTCCGACTTGTTCTACCAGCAAGATCCCGCTCCTGCGAATT
CCGCAGTGGTTCGCGGCAGTTACCAGGCAGGTCAGGATGTCTTCGTTGTC
AAGTCCGACGGCAACAAAGCCGTTAAGCATGTGGTCTCTACTCCCATGGC
GGTCCAGACCACCACTCAATCGCCGTCGAAGAGCCAGCACCTCGCCAAGA
CCCACAAGAGCTTTACCCCGGAGCCTCTGCGATTCGAGTTCACCGAGCAA
GATGCCATAAGGGGATCGATGAAGTACACCCAAGCCCCGCAAGCCAATCA
GTACTACTACGAAACCGTGGCCCAAGCTCCCCGCGAGCCCGCGAAATCTC
CTGCCCCGAAGATTGAACTCAGCAAGCCCATTAAGGAATACACCGATGAC
CCAGAGGATAGTTCCGACACTGAAAGTGGAAAGCAGCAAGATATTCCAAA
GGTGCCCACTGTGACGAGTTCAGCTACTCCTGACGATCCAAAGGACACGG
AAAACTACTGCGAGAAGATATGTGCTAATGTGTACGATGAAAACGATGAA
ATAATCTGTGGATCCGACGGATACATGTACACGGGCGAAACCCAACTGCA
GTGCTATTCGTCATGCCTCAATATAAGTGTGACGATTAAGAGTAAAGGAT
CTTGCTCTGCAAGCTTTCTAGACCAT
BO07211.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:52:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7173-RA | 1695 | CG7173-PA | 1..1692 | 17..1708 | 8460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:52:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7173-RA | 2439 | CG7173-RA | 467..2158 | 17..1708 | 8460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:52:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21556291..21557760 | 1486..17 | 7350 | 100 | Minus |
| 3L | 28110227 | 3L | 21555750..21555944 | 1678..1484 | 975 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:52:04 has no hits.
BO07211.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:16 Download gff for
BO07211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7173-RA | 1..1695 | 17..1712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:22:18 Download gff for
BO07211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7173-RA | 462..2159 | 17..1715 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:34:15 Download gff for
BO07211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7173-RA | 467..2158 | 17..1710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:16 Download gff for
BO07211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7173-RA | 462..2159 | 17..1715 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:27:49 Download gff for
BO07211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7173-RA | 467..2158 | 17..1710 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:27:49 Download gff for
BO07211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21555652..21555685 | 1677..1710 | 94 | <- | Minus |
| 3L | 21555752..21555941 | 1487..1676 | 100 | <- | Minus |
| 3L | 21556291..21557760 | 17..1486 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:34:15 Download gff for
BO07211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21548752..21548785 | 1677..1710 | 94 | <- | Minus |
| arm_3L | 21548852..21549041 | 1487..1676 | 100 | <- | Minus |
| arm_3L | 21549391..21550860 | 17..1486 | 100 | | Minus |
BO07211.pep Sequence
Translation from 16 to 1726
> BO07211.pep
MTQSPLKLAPILEALVLIVVLINQVQCGENDMRQARIRQFLSENQPLAQH
HIKHNRPPGPGQLPRIRSRSDNLAMLSGGSNKFLRSPQPATAQHIMRREQ
FGNFPANDQLRRYQFDQSQQGRFAHVKDTPVLDVGKNQFPLQYVSEQYIQ
NFKSSPRFNGNVIMKDTKPVYAPIQQHAIPVQASQYLHYPKLFGQQGSPS
FSVVPTQQTALQNSQFPQDPNSYSVYEDTDIPAKQAVNFRQAVPPPKESR
EAQDYLQFMSTNEYFLPKRDPDFKKLDAERDQQKLLHQYPQQYRQQQQQQ
LYQQQQQQHQQPQHQQPQQQQALQQHVPYKTAGLDNSVSSSYNEPIQVSD
LFYQQDPAPANSAVVRGSYQAGQDVFVVKSDGNKAVKHVVSTPMAVQTTT
QSPSKSQHLAKTHKSFTPEPLRFEFTEQDAIRGSMKYTQAPQANQYYYET
VAQAPREPAKSPAPKIELSKPIKEYTDDPEDSSDTESGKQQDIPKVPTVT
SSATPDDPKDTENYCEKICANVYDENDEIICGSDGYMYTGETQLQCYSSC
LNISVTIKSKGSCSASFLDH
BO07211.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:28:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7173-PA | 564 | CG7173-PA | 1..564 | 1..564 | 2970 | 100 | Plus |
| ptip-PA | 2294 | CG32133-PA | 210..467 | 280..511 | 167 | 26.7 | Plus |
| ptip-PA | 2294 | CG32133-PA | 851..1226 | 3..355 | 163 | 25.3 | Plus |
