Clone BO07214 Report

Search the DGRC for BO07214

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:72
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptRpS12-RB
Protein status:BO07214.pep: validated full length
Sequenced Size:451

Clone Sequence Records

BO07214.5prime Sequence

449 bp (448 high quality bases) assembled on 2005-12-04

> BO07214.5prime
GAAGTTATCAGTCGACATGGCCGACGTTGATGTTGATGTTCCCTCCGCTG
CCCCTGTGCTCGATGGCGCCATGGACATTAACACTGCCCTCCAGGAGGTC
TTGAAGAAGTCCCTGATCGCCGATGGACTCGTCCATGGCATCCACCAGGC
CTGCAAGGCCCTGGACAAGCGTCAGGCTGTTCTGTGCATCCTAGCCGAGT
CCTTCGACGAGCCCAACTACAAGAAGCTGGTTACCGCCCTGTGCAACGAG
CACCAGATCCCCCTTATCCGCGTGGACTCGCACAAGAAGCTGGGCGAATG
GTCCGGTCTGTGCAAGATCGACAAGGAGGGCAAGCCCCGCAAGGTGTGCG
GCTGCTCCGTGGTCGTGATCAAGGATTTCGGTGAGGAGACACCCGCTTTG
GACGTGGTTAAGGACCATCTCAGGCAGAACAGCGCAAGCTTTCTAGACC

BO07214.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG11271-PB 420 RpS12-RB 1..417 17..433 2085 100 Plus
RpS12-PC 420 RpS12-RC 1..417 17..433 2085 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:19:28
Subject Length Description Subject Range Query Range Score Percent Strand
RpS12-RB 613 CG11271-RB 69..485 17..433 2085 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:19:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13024366..13024634 165..433 1330 99.6 Plus
3L 28110227 3L 13023732..13023867 34..169 680 100 Plus
Blast to na_te.dros performed on 2015-02-04 20:19:25 has no hits.

BO07214.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:30 Download gff for BO07214.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS12-PF 1..420 17..437 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:38 Download gff for BO07214.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS12-PC 1..420 17..437 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:24:26 Download gff for BO07214.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS12-RB 62..488 9..437 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:48:25 Download gff for BO07214.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS12-RB 62..488 9..437 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:48:25 Download gff for BO07214.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13023732..13023866 34..168 100 -> Plus
3L 13024370..13024637 169..437 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:24:26 Download gff for BO07214.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13016832..13016966 34..168 100 -> Plus
arm_3L 13017470..13017737 169..437 99   Plus

BO07214.3prime Sequence

449 bp (448 high quality bases) assembled on 2005-12-04

> BO07214.3prime
ATGGTCTAGAAAGCTTGCGCTGTTCTGCCTGAGATGGTCCTTAACCACGT
CCAAAGCGGGTGTCTCCTCACCGAAATCCTTGATCACGACCACGGAGCAG
CCGCACACCTTGCGGGGCTTGCCCTCCTTGTCGATCTTGCACAGACCGGA
CCATTCGCCCAGCTTCTTGTGCGAGTCCACGCGGATAAGGGGGATCTGGT
GCTCGTTGCACAGGGCGGTAACCAGCTTCTTGTAGTTGGGCTCGTCGAAG
GACTCGGCTAGGATGCACAGAACAGCCTGACGCTTGTCCAGGGCCTTGCA
GGCCTGGTGGATGCCATGGACGAGTCCATCGGCGATCAGGGACTTCTTCA
AGACCTCCTGGAGGGCAGTGTTAATGTCCATGGCGCCATCGAGCACAGGG
GCAGCGGAGGGAACATCAACATCAACGTCGGCCATGTCGACTGATAACT

BO07214.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG11271-PB 420 RpS12-RB 1..417 435..19 2085 100 Minus
RpS12-PC 420 RpS12-RC 1..417 435..19 2085 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:17:29
Subject Length Description Subject Range Query Range Score Percent Strand
RpS12-RB 613 CG11271-RB 69..485 435..19 2085 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:17:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13024366..13024634 287..19 1330 99.6 Minus
3L 28110227 3L 13023732..13023867 418..283 680 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:17:25 has no hits.

BO07214.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:29 Download gff for BO07214.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS12-PF 1..420 15..435 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:37 Download gff for BO07214.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS12-PC 1..420 15..435 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:05:27 Download gff for BO07214.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS12-RB 62..488 15..443 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:29:42 Download gff for BO07214.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS12-RB 62..488 15..443 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:29:42 Download gff for BO07214.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 13023732..13023866 284..418 100 -> Minus
3L 13024370..13024637 15..283 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:05:27 Download gff for BO07214.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13016832..13016966 284..418 100 -> Minus
arm_3L 13017470..13017737 15..283 99   Minus

BO07214.complete Sequence

451 bp (451 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630705

> BO07214.complete
GAAGTTATCAGTCGACATGGCCGACGTTGATGTTGATGTTCCCTCCGCTG
CCCCTGTGCTCGATGGCGCCATGGACATTAACACTGCCCTCCAGGAGGTC
TTGAAGAAGTCCCTGATCGCCGATGGACTCGTCCATGGCATCCACCAGGC
CTGCAAGGCCCTGGACAAGCGTCAGGCTGTTCTGTGCATCCTAGCCGAGT
CCTTCGACGAGCCCAACTACAAGAAGCTGGTTACCGCCCTGTGCAACGAG
CACCAGATCCCCCTTATCCGCGTGGACTCGCACAAGAAGCTGGGCGAATG
GTCCGGTCTGTGCAAGATCGACAAGGAGGGCAAGCCCCGCAAGGTGTGCG
GCTGCTCCGTGGTCGTGATCAAGGATTTCGGTGAGGAGACACCCGCTTTG
GACGTGGTTAAGGACCATCTCAGGCAGAACAGCGCAAGCTTTCTAGACCA
T

BO07214.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
RpS12-RB 420 CG11271-PB 1..417 17..433 2085 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:04:18
Subject Length Description Subject Range Query Range Score Percent Strand
RpS12-RB 613 CG11271-RB 69..485 17..433 2085 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:04:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13024366..13024634 165..433 1330 99.6 Plus
3L 28110227 3L 13023732..13023867 34..169 680 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:04:16 has no hits.

BO07214.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:41 Download gff for BO07214.complete
Subject Subject Range Query Range Percent Splice Strand
RpS12-RC 1..420 17..437 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:57 Download gff for BO07214.complete
Subject Subject Range Query Range Percent Splice Strand
RpS12-RB 45..471 9..437 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:44 Download gff for BO07214.complete
Subject Subject Range Query Range Percent Splice Strand
RpS12-RB 69..485 17..435 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:41 Download gff for BO07214.complete
Subject Subject Range Query Range Percent Splice Strand
RpS12-RB 45..471 9..437 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:14:05 Download gff for BO07214.complete
Subject Subject Range Query Range Percent Splice Strand
RpS12-RB 69..485 17..435 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:14:05 Download gff for BO07214.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13024370..13024634 169..435 99   Plus
3L 13023509..13023525 17..33 100 -> Plus
3L 13023732..13023866 34..168 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:44 Download gff for BO07214.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13016609..13016625 17..33 100 -> Plus
arm_3L 13016832..13016966 34..168 100 -> Plus
arm_3L 13017470..13017734 169..435 99   Plus

BO07214.pep Sequence

Translation from 16 to 451

> BO07214.pep
MADVDVDVPSAAPVLDGAMDINTALQEVLKKSLIADGLVHGIHQACKALD
KRQAVLCILAESFDEPNYKKLVTALCNEHQIPLIRVDSHKKLGEWSGLCK
IDKEGKPRKVCGCSVVVIKDFGEETPALDVVKDHLRQNSASFLDH

BO07214.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
RpS12-PB 139 CG11271-PB 1..139 1..139 724 100 Plus