Clone Sequence Records
BO07214.5prime Sequence
449 bp (448 high quality bases) assembled on 2005-12-04
> BO07214.5prime
GAAGTTATCAGTCGACATGGCCGACGTTGATGTTGATGTTCCCTCCGCTG
CCCCTGTGCTCGATGGCGCCATGGACATTAACACTGCCCTCCAGGAGGTC
TTGAAGAAGTCCCTGATCGCCGATGGACTCGTCCATGGCATCCACCAGGC
CTGCAAGGCCCTGGACAAGCGTCAGGCTGTTCTGTGCATCCTAGCCGAGT
CCTTCGACGAGCCCAACTACAAGAAGCTGGTTACCGCCCTGTGCAACGAG
CACCAGATCCCCCTTATCCGCGTGGACTCGCACAAGAAGCTGGGCGAATG
GTCCGGTCTGTGCAAGATCGACAAGGAGGGCAAGCCCCGCAAGGTGTGCG
GCTGCTCCGTGGTCGTGATCAAGGATTTCGGTGAGGAGACACCCGCTTTG
GACGTGGTTAAGGACCATCTCAGGCAGAACAGCGCAAGCTTTCTAGACC
BO07214.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11271-PB | 420 | RpS12-RB | 1..417 | 17..433 | 2085 | 100 | Plus |
RpS12-PC | 420 | RpS12-RC | 1..417 | 17..433 | 2085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:19:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS12-RB | 613 | CG11271-RB | 69..485 | 17..433 | 2085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:19:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13024366..13024634 | 165..433 | 1330 | 99.6 | Plus |
3L | 28110227 | 3L | 13023732..13023867 | 34..169 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:19:25 has no hits.
BO07214.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:30 Download gff for
BO07214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS12-PF | 1..420 | 17..437 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:38 Download gff for
BO07214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS12-PC | 1..420 | 17..437 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:24:26 Download gff for
BO07214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS12-RB | 62..488 | 9..437 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:48:25 Download gff for
BO07214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS12-RB | 62..488 | 9..437 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:48:25 Download gff for
BO07214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13023732..13023866 | 34..168 | 100 | -> | Plus |
3L | 13024370..13024637 | 169..437 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:24:26 Download gff for
BO07214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13016832..13016966 | 34..168 | 100 | -> | Plus |
arm_3L | 13017470..13017737 | 169..437 | 99 | | Plus |
BO07214.3prime Sequence
449 bp (448 high quality bases) assembled on 2005-12-04
> BO07214.3prime
ATGGTCTAGAAAGCTTGCGCTGTTCTGCCTGAGATGGTCCTTAACCACGT
CCAAAGCGGGTGTCTCCTCACCGAAATCCTTGATCACGACCACGGAGCAG
CCGCACACCTTGCGGGGCTTGCCCTCCTTGTCGATCTTGCACAGACCGGA
CCATTCGCCCAGCTTCTTGTGCGAGTCCACGCGGATAAGGGGGATCTGGT
GCTCGTTGCACAGGGCGGTAACCAGCTTCTTGTAGTTGGGCTCGTCGAAG
GACTCGGCTAGGATGCACAGAACAGCCTGACGCTTGTCCAGGGCCTTGCA
GGCCTGGTGGATGCCATGGACGAGTCCATCGGCGATCAGGGACTTCTTCA
AGACCTCCTGGAGGGCAGTGTTAATGTCCATGGCGCCATCGAGCACAGGG
GCAGCGGAGGGAACATCAACATCAACGTCGGCCATGTCGACTGATAACT
BO07214.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11271-PB | 420 | RpS12-RB | 1..417 | 435..19 | 2085 | 100 | Minus |
RpS12-PC | 420 | RpS12-RC | 1..417 | 435..19 | 2085 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:17:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS12-RB | 613 | CG11271-RB | 69..485 | 435..19 | 2085 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:17:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13024366..13024634 | 287..19 | 1330 | 99.6 | Minus |
3L | 28110227 | 3L | 13023732..13023867 | 418..283 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:17:25 has no hits.
BO07214.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:29 Download gff for
BO07214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS12-PF | 1..420 | 15..435 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:37 Download gff for
BO07214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS12-PC | 1..420 | 15..435 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:05:27 Download gff for
BO07214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS12-RB | 62..488 | 15..443 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:29:42 Download gff for
BO07214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS12-RB | 62..488 | 15..443 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:29:42 Download gff for
BO07214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13023732..13023866 | 284..418 | 100 | -> | Minus |
3L | 13024370..13024637 | 15..283 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:05:27 Download gff for
BO07214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13016832..13016966 | 284..418 | 100 | -> | Minus |
arm_3L | 13017470..13017737 | 15..283 | 99 | | Minus |
BO07214.complete Sequence
451 bp (451 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630705
> BO07214.complete
GAAGTTATCAGTCGACATGGCCGACGTTGATGTTGATGTTCCCTCCGCTG
CCCCTGTGCTCGATGGCGCCATGGACATTAACACTGCCCTCCAGGAGGTC
TTGAAGAAGTCCCTGATCGCCGATGGACTCGTCCATGGCATCCACCAGGC
CTGCAAGGCCCTGGACAAGCGTCAGGCTGTTCTGTGCATCCTAGCCGAGT
CCTTCGACGAGCCCAACTACAAGAAGCTGGTTACCGCCCTGTGCAACGAG
CACCAGATCCCCCTTATCCGCGTGGACTCGCACAAGAAGCTGGGCGAATG
GTCCGGTCTGTGCAAGATCGACAAGGAGGGCAAGCCCCGCAAGGTGTGCG
GCTGCTCCGTGGTCGTGATCAAGGATTTCGGTGAGGAGACACCCGCTTTG
GACGTGGTTAAGGACCATCTCAGGCAGAACAGCGCAAGCTTTCTAGACCA
T
BO07214.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:04:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS12-RB | 420 | CG11271-PB | 1..417 | 17..433 | 2085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:04:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS12-RB | 613 | CG11271-RB | 69..485 | 17..433 | 2085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:04:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13024366..13024634 | 165..433 | 1330 | 99.6 | Plus |
3L | 28110227 | 3L | 13023732..13023867 | 34..169 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:04:16 has no hits.
BO07214.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:41 Download gff for
BO07214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS12-RC | 1..420 | 17..437 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:57 Download gff for
BO07214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS12-RB | 45..471 | 9..437 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:44 Download gff for
BO07214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS12-RB | 69..485 | 17..435 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:41 Download gff for
BO07214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS12-RB | 45..471 | 9..437 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:14:05 Download gff for
BO07214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS12-RB | 69..485 | 17..435 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:14:05 Download gff for
BO07214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13024370..13024634 | 169..435 | 99 | | Plus |
3L | 13023509..13023525 | 17..33 | 100 | -> | Plus |
3L | 13023732..13023866 | 34..168 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:44 Download gff for
BO07214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13016609..13016625 | 17..33 | 100 | -> | Plus |
arm_3L | 13016832..13016966 | 34..168 | 100 | -> | Plus |
arm_3L | 13017470..13017734 | 169..435 | 99 | | Plus |
BO07214.pep Sequence
Translation from 16 to 451
> BO07214.pep
MADVDVDVPSAAPVLDGAMDINTALQEVLKKSLIADGLVHGIHQACKALD
KRQAVLCILAESFDEPNYKKLVTALCNEHQIPLIRVDSHKKLGEWSGLCK
IDKEGKPRKVCGCSVVVIKDFGEETPALDVVKDHLRQNSASFLDH
BO07214.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:44:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS12-PB | 139 | CG11271-PB | 1..139 | 1..139 | 724 | 100 | Plus |