Clone Sequence Records
BO07215.3prime Sequence
826 bp (825 high quality bases) assembled on 2005-12-04
> BO07215.3prime
ATGGTCTAGAAAGCTTGCTTTCGTGAACGCCATGAACACCGCCCACAGAA
TTTCGTTCGCATTCGGCTTGGCCGACTCGGCTTCGAAGTCGAGATCCAGC
AGCTCCCGCACCCGCTTCATGGCCACCTCATAGTCGTCATCATTCAGCGG
CGCGAAGGCGTTCTCGATCACATCGCTGGCGTGCGCCAGGAAGATAAGCG
CCAGCATCCGCTTGTCCATGCGCTGTGGATCGTTGACCCACTTGGAGAGC
ACAGAATCTTGGATCTTCTTCACCAGGCGACATTTGACAACATTGTCGCT
CAGCGGATGTGTCGTCATATCGAAGAGTAGAAAATTTTGCTTTTCCGTCG
TGAGCACACCCTTCTCCACCAGATTTTTGGCCAGACGTTCGCGTACATTT
TTCAGTTGGTAGCGCAATTTCAACGGATTCCAGGTTTCACCACTAAGATA
TTCAATCCAGCTCTGCACCGTCTCCGGGGGATCTGTTTCCTTAATGTGTT
TAAGTGCCTCATCGAGTAGAACGTCTCCCGTCTGCTGATCCGATTTCAGT
ATTAATTTCCTTGTACATAGACCACGTCGCCGCATTCCAGATTTCTCGAT
CATCACGCGACCTCGCAGTCCAAGCTCTATGAGAATGCATCCGCGCAAGC
CGCTTGATATGCAGTCGTTCCAGAAAGATGTGTAGCCCTCCTTGTCCTTG
AGTCCCAGCAGCAGAACCTCCTCCATGAGCGTTAGTCGTGTTTCCTTGGA
GTCGCCATCGTCGATATTGTCCTCCTGGTCCTTTAGGTTGTCCAGTGCAT
CCTGGTTGTCGTCCGGCGTGTTGGCA
BO07215.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7085-PD | 885 | l(2)s5379-RD | 75..882 | 826..19 | 4040 | 100 | Minus |
CG7085-PA | 885 | l(2)s5379-RA | 75..882 | 826..19 | 4040 | 100 | Minus |
CG7085-PE | 885 | l(2)s5379-RE | 75..882 | 826..19 | 4040 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:10:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sau-RE | 1720 | CG7085-RE | 623..1430 | 826..19 | 4040 | 100 | Minus |
sau-RA | 2395 | CG7085-RA | 623..1430 | 826..19 | 4040 | 100 | Minus |
sau-RD | 2585 | CG7085-RD | 802..1609 | 826..19 | 4040 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:10:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2229876..2230123 | 266..19 | 1240 | 100 | Minus |
2L | 23513712 | 2L | 2229637..2229813 | 441..265 | 885 | 100 | Minus |
2L | 23513712 | 2L | 2227143..2227282 | 826..687 | 700 | 100 | Minus |
2L | 23513712 | 2L | 2229264..2229394 | 689..559 | 655 | 100 | Minus |
2L | 23513712 | 2L | 2229455..2229578 | 561..438 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 05:10:16 has no hits.
BO07215.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:31 Download gff for
BO07215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7085-PD | 76..885 | 18..825 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:39 Download gff for
BO07215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7085-PE | 76..885 | 18..825 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:21:23 Download gff for
BO07215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)s5379-RD | 803..1609 | 19..825 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:35:42 Download gff for
BO07215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sau-RD | 803..1609 | 19..825 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:35:42 Download gff for
BO07215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2229878..2230123 | 19..264 | 100 | | Minus |
2L | 2227144..2227281 | 688..825 | 100 | -> | Minus |
2L | 2229266..2229393 | 560..687 | 100 | -> | Minus |
2L | 2229457..2229575 | 441..559 | 100 | -> | Minus |
2L | 2229638..2229813 | 265..440 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:21:23 Download gff for
BO07215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2227144..2227281 | 688..825 | 100 | -> | Minus |
arm_2L | 2229266..2229393 | 560..687 | 100 | -> | Minus |
arm_2L | 2229457..2229575 | 441..559 | 100 | -> | Minus |
arm_2L | 2229638..2229813 | 265..440 | 100 | -> | Minus |
arm_2L | 2229878..2230123 | 19..264 | 100 | | Minus |
BO07215.5prime Sequence
862 bp (850 high quality bases) assembled on 2005-12-04
> BO07215.5prime
GAAGTTATCAGTCGACATGAATCGCTCCGACGGATTGGTGCGTCGCTCGG
TGAAACCCCGCGAAAACGGTGGGGCGGAGGGTGGGTTGAATGCCAACACG
CCGGACGACAACCAGGATGCACTGGACAACCTAAAGGACCAGGAGGACAA
TATCGACGATGGCGACTCCAAGGAAACACGACTAACGCTCATGGAGGAGG
TTCTGCTGCTGGGACTCAAGGACAAGGAGGGCTACACATCTTTCTGGAAC
GACTGCATATCAAGCGGCTTGCGCGGATGCATTCTCATAGAGCTTGGACT
GCGAGGTCGCGTGATGATCGAGAAATCTGGAATGCGGCGACGTGGTCTAT
GTACAAGGAAATTAATACTGAAATCGGATCAGCAGACGGGAGACGTTCTA
CTCGATGAGGCACTTAAACACATTAAGGAAACAGATCCCCCGGAGACGGT
GCAGAGCTGGATTGAATATCTTAGTGGTGAAACCTGGAATCCGTTGAAAT
TGCGCTACCAACTGAAAAATGTACGCGAACGTCTGGCCAAAAATCTGGTG
GAGAAGGGTGTGCTCACGACGGAAAAGCAAAATTTTCTACTCTTCGATAT
GACGACACATCCGCTGAGCGACAATGTTGTCAAATGTCGCCTGGTGAAGA
AGATCCAAGATTCTGTGCTCTCCAAGTGGGTCAACGATCCACAGCGCATG
GACAAGCGGATGCTGGCGCTTATCTTCCTGGCGCACGCCAGCGATGTGAT
CGAGAACGCCTTCGCGCCGCTGAATGATGACGACTATGAGGTGGCCATGA
AGCGGGTGCGGGAGCTGCTGGATCTCGACTTCGAAGCCGAGTCGGCCAAG
CCGAATGCGAAC
BO07215.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7085-PD | 885 | l(2)s5379-RD | 1..846 | 17..862 | 4230 | 100 | Plus |
CG7085-PA | 885 | l(2)s5379-RA | 1..846 | 17..862 | 4230 | 100 | Plus |
CG7085-PE | 885 | l(2)s5379-RE | 1..846 | 17..862 | 4230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:32:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sau-RE | 1720 | CG7085-RE | 549..1394 | 17..862 | 4230 | 100 | Plus |
sau-RA | 2395 | CG7085-RA | 549..1394 | 17..862 | 4230 | 100 | Plus |
sau-RD | 2585 | CG7085-RD | 728..1573 | 17..862 | 4230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:32:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2227069..2227282 | 17..230 | 1070 | 100 | Plus |
2L | 23513712 | 2L | 2229876..2230087 | 651..862 | 1060 | 100 | Plus |
2L | 23513712 | 2L | 2229637..2229813 | 476..652 | 885 | 100 | Plus |
2L | 23513712 | 2L | 2229264..2229394 | 228..358 | 655 | 100 | Plus |
2L | 23513712 | 2L | 2229455..2229578 | 356..479 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:32:46 has no hits.
BO07215.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:32 Download gff for
BO07215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7085-PD | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:41 Download gff for
BO07215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7085-PE | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:55:04 Download gff for
BO07215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)s5379-RD | 722..1573 | 8..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:38:57 Download gff for
BO07215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sau-RD | 722..1573 | 8..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:38:57 Download gff for
BO07215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2227063..2227281 | 8..229 | 98 | -> | Plus |
2L | 2229266..2229393 | 230..357 | 100 | -> | Plus |
2L | 2229457..2229575 | 358..476 | 100 | -> | Plus |
2L | 2229638..2229813 | 477..652 | 100 | -> | Plus |
2L | 2229878..2230087 | 653..862 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:55:04 Download gff for
BO07215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2227063..2227281 | 8..229 | 98 | -> | Plus |
arm_2L | 2229266..2229393 | 230..357 | 100 | -> | Plus |
arm_2L | 2229457..2229575 | 358..476 | 100 | -> | Plus |
arm_2L | 2229638..2229813 | 477..652 | 100 | -> | Plus |
arm_2L | 2229878..2230087 | 653..862 | 100 | | Plus |
BO07215.complete Sequence
916 bp (916 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630706
> BO07215.complete
GAAGTTATCAGTCGACATGAATCGCTCCGACGGATTGGTGCGTCGCTCGG
TGAAACCCCGCGAAAACGGTGGGGCGGAGGGTGGGTTGAATGCCAACACG
CCGGACGACAACCAGGATGCACTGGACAACCTAAAGGACCAGGAGGACAA
TATCGACGATGGCGACTCCAAGGAAACACGACTAACGCTCATGGAGGAGG
TTCTGCTGCTGGGACTCAAGGACAAGGAGGGCTACACATCTTTCTGGAAC
GACTGCATATCAAGCGGCTTGCGCGGATGCATTCTCATAGAGCTTGGACT
GCGAGGTCGCGTGATGATCGAGAAATCTGGAATGCGGCGACGTGGTCTAT
GTACAAGGAAATTAATACTGAAATCGGATCAGCAGACGGGAGACGTTCTA
CTCGATGAGGCACTTAAACACATTAAGGAAACAGATCCCCCGGAGACGGT
GCAGAGCTGGATTGAATATCTTAGTGGTGAAACCTGGAATCCGTTGAAAT
TGCGCTACCAACTGAAAAATGTACGCGAACGTCTGGCCAAAAATCTGGTG
GAGAAGGGTGTGCTCACGACGGAAAAGCAAAATTTTCTACTCTTCGATAT
GACGACACATCCGCTGAGCGACAATGTTGTCAAATGTCGCCTGGTGAAGA
AGATCCAAGATTCTGTGCTCTCCAAGTGGGTCAACGATCCACAGCGCATG
GACAAGCGGATGCTGGCGCTTATCTTCCTGGCGCACGCCAGCGATGTGAT
CGAGAACGCCTTCGCGCCGCTGAATGATGACGACTATGAGGTGGCCATGA
AGCGGGTGCGGGAGCTGCTGGATCTCGACTTCGAAGCCGAGTCGGCCAAG
CCGAATGCGAACGAAATTCTGTGGGCGGTGTTCATGGCGTTCACGAAAGC
AAGCTTTCTAGACCAT
BO07215.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:03:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sau-RE | 885 | CG7085-PE | 1..882 | 17..898 | 4410 | 100 | Plus |
sau-RA | 885 | CG7085-PA | 1..882 | 17..898 | 4410 | 100 | Plus |
sau-RD | 885 | CG7085-PD | 1..882 | 17..898 | 4410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sau-RE | 1720 | CG7085-RE | 549..1430 | 17..898 | 4410 | 100 | Plus |
sau-RA | 2395 | CG7085-RA | 549..1430 | 17..898 | 4410 | 100 | Plus |
sau-RD | 2585 | CG7085-RD | 728..1609 | 17..898 | 4410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2229876..2230123 | 651..898 | 1240 | 100 | Plus |
2L | 23513712 | 2L | 2227069..2227282 | 17..230 | 1070 | 100 | Plus |
2L | 23513712 | 2L | 2229637..2229813 | 476..652 | 885 | 100 | Plus |
2L | 23513712 | 2L | 2229264..2229394 | 228..358 | 655 | 100 | Plus |
2L | 23513712 | 2L | 2229455..2229578 | 356..479 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:03:24 has no hits.
BO07215.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:42 Download gff for
BO07215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)s5379-RE | 1..885 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:59 Download gff for
BO07215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)s5379-RE | 541..1428 | 8..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:32 Download gff for
BO07215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)s5379-RD | 728..1609 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:43 Download gff for
BO07215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)s5379-RE | 541..1428 | 8..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:18 Download gff for
BO07215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sau-RD | 728..1609 | 17..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:18 Download gff for
BO07215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2227069..2227281 | 17..229 | 100 | -> | Plus |
2L | 2229266..2229393 | 230..357 | 100 | -> | Plus |
2L | 2229457..2229575 | 358..476 | 100 | -> | Plus |
2L | 2229638..2229813 | 477..652 | 100 | -> | Plus |
2L | 2229878..2230123 | 653..900 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:32 Download gff for
BO07215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2227069..2227281 | 17..229 | 100 | -> | Plus |
arm_2L | 2229266..2229393 | 230..357 | 100 | -> | Plus |
arm_2L | 2229457..2229575 | 358..476 | 100 | -> | Plus |
arm_2L | 2229638..2229813 | 477..652 | 100 | -> | Plus |
arm_2L | 2229878..2230123 | 653..900 | 99 | | Plus |
BO07215.pep Sequence
Translation from 16 to 916
> BO07215.pep
MNRSDGLVRRSVKPRENGGAEGGLNANTPDDNQDALDNLKDQEDNIDDGD
SKETRLTLMEEVLLLGLKDKEGYTSFWNDCISSGLRGCILIELGLRGRVM
IEKSGMRRRGLCTRKLILKSDQQTGDVLLDEALKHIKETDPPETVQSWIE
YLSGETWNPLKLRYQLKNVRERLAKNLVEKGVLTTEKQNFLLFDMTTHPL
SDNVVKCRLVKKIQDSVLSKWVNDPQRMDKRMLALIFLAHASDVIENAFA
PLNDDDYEVAMKRVRELLDLDFEAESAKPNANEILWAVFMAFTKASFLDH
BO07215.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:44:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sau-PE | 294 | CG7085-PE | 1..294 | 1..294 | 1520 | 100 | Plus |
sau-PA | 294 | CG7085-PA | 1..294 | 1..294 | 1520 | 100 | Plus |
sau-PD | 294 | CG7085-PD | 1..294 | 1..294 | 1520 | 100 | Plus |