Clone BO07215 Report

Search the DGRC for BO07215

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:72
Well:15
Vector:pDNR-Dual
Associated Gene/Transcriptl(2)s5379-RA
Protein status:BO07215.pep: validated full length
Sequenced Size:916

Clone Sequence Records

BO07215.3prime Sequence

826 bp (825 high quality bases) assembled on 2005-12-04

> BO07215.3prime
ATGGTCTAGAAAGCTTGCTTTCGTGAACGCCATGAACACCGCCCACAGAA
TTTCGTTCGCATTCGGCTTGGCCGACTCGGCTTCGAAGTCGAGATCCAGC
AGCTCCCGCACCCGCTTCATGGCCACCTCATAGTCGTCATCATTCAGCGG
CGCGAAGGCGTTCTCGATCACATCGCTGGCGTGCGCCAGGAAGATAAGCG
CCAGCATCCGCTTGTCCATGCGCTGTGGATCGTTGACCCACTTGGAGAGC
ACAGAATCTTGGATCTTCTTCACCAGGCGACATTTGACAACATTGTCGCT
CAGCGGATGTGTCGTCATATCGAAGAGTAGAAAATTTTGCTTTTCCGTCG
TGAGCACACCCTTCTCCACCAGATTTTTGGCCAGACGTTCGCGTACATTT
TTCAGTTGGTAGCGCAATTTCAACGGATTCCAGGTTTCACCACTAAGATA
TTCAATCCAGCTCTGCACCGTCTCCGGGGGATCTGTTTCCTTAATGTGTT
TAAGTGCCTCATCGAGTAGAACGTCTCCCGTCTGCTGATCCGATTTCAGT
ATTAATTTCCTTGTACATAGACCACGTCGCCGCATTCCAGATTTCTCGAT
CATCACGCGACCTCGCAGTCCAAGCTCTATGAGAATGCATCCGCGCAAGC
CGCTTGATATGCAGTCGTTCCAGAAAGATGTGTAGCCCTCCTTGTCCTTG
AGTCCCAGCAGCAGAACCTCCTCCATGAGCGTTAGTCGTGTTTCCTTGGA
GTCGCCATCGTCGATATTGTCCTCCTGGTCCTTTAGGTTGTCCAGTGCAT
CCTGGTTGTCGTCCGGCGTGTTGGCA

BO07215.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG7085-PD 885 l(2)s5379-RD 75..882 826..19 4040 100 Minus
CG7085-PA 885 l(2)s5379-RA 75..882 826..19 4040 100 Minus
CG7085-PE 885 l(2)s5379-RE 75..882 826..19 4040 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:10:17
Subject Length Description Subject Range Query Range Score Percent Strand
sau-RE 1720 CG7085-RE 623..1430 826..19 4040 100 Minus
sau-RA 2395 CG7085-RA 623..1430 826..19 4040 100 Minus
sau-RD 2585 CG7085-RD 802..1609 826..19 4040 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:10:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2229876..2230123 266..19 1240 100 Minus
2L 23513712 2L 2229637..2229813 441..265 885 100 Minus
2L 23513712 2L 2227143..2227282 826..687 700 100 Minus
2L 23513712 2L 2229264..2229394 689..559 655 100 Minus
2L 23513712 2L 2229455..2229578 561..438 620 100 Minus
Blast to na_te.dros performed on 2015-02-11 05:10:16 has no hits.

BO07215.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:31 Download gff for BO07215.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7085-PD 76..885 18..825 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:39 Download gff for BO07215.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7085-PE 76..885 18..825 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:21:23 Download gff for BO07215.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)s5379-RD 803..1609 19..825 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:35:42 Download gff for BO07215.3prime
Subject Subject Range Query Range Percent Splice Strand
sau-RD 803..1609 19..825 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:35:42 Download gff for BO07215.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2229878..2230123 19..264 100   Minus
2L 2227144..2227281 688..825 100 -> Minus
2L 2229266..2229393 560..687 100 -> Minus
2L 2229457..2229575 441..559 100 -> Minus
2L 2229638..2229813 265..440 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:21:23 Download gff for BO07215.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2227144..2227281 688..825 100 -> Minus
arm_2L 2229266..2229393 560..687 100 -> Minus
arm_2L 2229457..2229575 441..559 100 -> Minus
arm_2L 2229638..2229813 265..440 100 -> Minus
arm_2L 2229878..2230123 19..264 100   Minus

BO07215.5prime Sequence

862 bp (850 high quality bases) assembled on 2005-12-04

> BO07215.5prime
GAAGTTATCAGTCGACATGAATCGCTCCGACGGATTGGTGCGTCGCTCGG
TGAAACCCCGCGAAAACGGTGGGGCGGAGGGTGGGTTGAATGCCAACACG
CCGGACGACAACCAGGATGCACTGGACAACCTAAAGGACCAGGAGGACAA
TATCGACGATGGCGACTCCAAGGAAACACGACTAACGCTCATGGAGGAGG
TTCTGCTGCTGGGACTCAAGGACAAGGAGGGCTACACATCTTTCTGGAAC
GACTGCATATCAAGCGGCTTGCGCGGATGCATTCTCATAGAGCTTGGACT
GCGAGGTCGCGTGATGATCGAGAAATCTGGAATGCGGCGACGTGGTCTAT
GTACAAGGAAATTAATACTGAAATCGGATCAGCAGACGGGAGACGTTCTA
CTCGATGAGGCACTTAAACACATTAAGGAAACAGATCCCCCGGAGACGGT
GCAGAGCTGGATTGAATATCTTAGTGGTGAAACCTGGAATCCGTTGAAAT
TGCGCTACCAACTGAAAAATGTACGCGAACGTCTGGCCAAAAATCTGGTG
GAGAAGGGTGTGCTCACGACGGAAAAGCAAAATTTTCTACTCTTCGATAT
GACGACACATCCGCTGAGCGACAATGTTGTCAAATGTCGCCTGGTGAAGA
AGATCCAAGATTCTGTGCTCTCCAAGTGGGTCAACGATCCACAGCGCATG
GACAAGCGGATGCTGGCGCTTATCTTCCTGGCGCACGCCAGCGATGTGAT
CGAGAACGCCTTCGCGCCGCTGAATGATGACGACTATGAGGTGGCCATGA
AGCGGGTGCGGGAGCTGCTGGATCTCGACTTCGAAGCCGAGTCGGCCAAG
CCGAATGCGAAC

BO07215.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG7085-PD 885 l(2)s5379-RD 1..846 17..862 4230 100 Plus
CG7085-PA 885 l(2)s5379-RA 1..846 17..862 4230 100 Plus
CG7085-PE 885 l(2)s5379-RE 1..846 17..862 4230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:32:48
Subject Length Description Subject Range Query Range Score Percent Strand
sau-RE 1720 CG7085-RE 549..1394 17..862 4230 100 Plus
sau-RA 2395 CG7085-RA 549..1394 17..862 4230 100 Plus
sau-RD 2585 CG7085-RD 728..1573 17..862 4230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2227069..2227282 17..230 1070 100 Plus
2L 23513712 2L 2229876..2230087 651..862 1060 100 Plus
2L 23513712 2L 2229637..2229813 476..652 885 100 Plus
2L 23513712 2L 2229264..2229394 228..358 655 100 Plus
2L 23513712 2L 2229455..2229578 356..479 620 100 Plus
Blast to na_te.dros performed on 2015-02-11 03:32:46 has no hits.

BO07215.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:32 Download gff for BO07215.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7085-PD 1..846 17..862 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:41 Download gff for BO07215.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7085-PE 1..846 17..862 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:55:04 Download gff for BO07215.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)s5379-RD 722..1573 8..862 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:38:57 Download gff for BO07215.5prime
Subject Subject Range Query Range Percent Splice Strand
sau-RD 722..1573 8..862 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:38:57 Download gff for BO07215.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2227063..2227281 8..229 98 -> Plus
2L 2229266..2229393 230..357 100 -> Plus
2L 2229457..2229575 358..476 100 -> Plus
2L 2229638..2229813 477..652 100 -> Plus
2L 2229878..2230087 653..862 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:55:04 Download gff for BO07215.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2227063..2227281 8..229 98 -> Plus
arm_2L 2229266..2229393 230..357 100 -> Plus
arm_2L 2229457..2229575 358..476 100 -> Plus
arm_2L 2229638..2229813 477..652 100 -> Plus
arm_2L 2229878..2230087 653..862 100   Plus

BO07215.complete Sequence

916 bp (916 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630706

> BO07215.complete
GAAGTTATCAGTCGACATGAATCGCTCCGACGGATTGGTGCGTCGCTCGG
TGAAACCCCGCGAAAACGGTGGGGCGGAGGGTGGGTTGAATGCCAACACG
CCGGACGACAACCAGGATGCACTGGACAACCTAAAGGACCAGGAGGACAA
TATCGACGATGGCGACTCCAAGGAAACACGACTAACGCTCATGGAGGAGG
TTCTGCTGCTGGGACTCAAGGACAAGGAGGGCTACACATCTTTCTGGAAC
GACTGCATATCAAGCGGCTTGCGCGGATGCATTCTCATAGAGCTTGGACT
GCGAGGTCGCGTGATGATCGAGAAATCTGGAATGCGGCGACGTGGTCTAT
GTACAAGGAAATTAATACTGAAATCGGATCAGCAGACGGGAGACGTTCTA
CTCGATGAGGCACTTAAACACATTAAGGAAACAGATCCCCCGGAGACGGT
GCAGAGCTGGATTGAATATCTTAGTGGTGAAACCTGGAATCCGTTGAAAT
TGCGCTACCAACTGAAAAATGTACGCGAACGTCTGGCCAAAAATCTGGTG
GAGAAGGGTGTGCTCACGACGGAAAAGCAAAATTTTCTACTCTTCGATAT
GACGACACATCCGCTGAGCGACAATGTTGTCAAATGTCGCCTGGTGAAGA
AGATCCAAGATTCTGTGCTCTCCAAGTGGGTCAACGATCCACAGCGCATG
GACAAGCGGATGCTGGCGCTTATCTTCCTGGCGCACGCCAGCGATGTGAT
CGAGAACGCCTTCGCGCCGCTGAATGATGACGACTATGAGGTGGCCATGA
AGCGGGTGCGGGAGCTGCTGGATCTCGACTTCGAAGCCGAGTCGGCCAAG
CCGAATGCGAACGAAATTCTGTGGGCGGTGTTCATGGCGTTCACGAAAGC
AAGCTTTCTAGACCAT

BO07215.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:03:25
Subject Length Description Subject Range Query Range Score Percent Strand
sau-RE 885 CG7085-PE 1..882 17..898 4410 100 Plus
sau-RA 885 CG7085-PA 1..882 17..898 4410 100 Plus
sau-RD 885 CG7085-PD 1..882 17..898 4410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:26
Subject Length Description Subject Range Query Range Score Percent Strand
sau-RE 1720 CG7085-RE 549..1430 17..898 4410 100 Plus
sau-RA 2395 CG7085-RA 549..1430 17..898 4410 100 Plus
sau-RD 2585 CG7085-RD 728..1609 17..898 4410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2229876..2230123 651..898 1240 100 Plus
2L 23513712 2L 2227069..2227282 17..230 1070 100 Plus
2L 23513712 2L 2229637..2229813 476..652 885 100 Plus
2L 23513712 2L 2229264..2229394 228..358 655 100 Plus
2L 23513712 2L 2229455..2229578 356..479 620 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:03:24 has no hits.

BO07215.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:42 Download gff for BO07215.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)s5379-RE 1..885 17..899 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:59 Download gff for BO07215.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)s5379-RE 541..1428 8..898 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:32 Download gff for BO07215.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)s5379-RD 728..1609 17..900 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:43 Download gff for BO07215.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)s5379-RE 541..1428 8..898 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:18 Download gff for BO07215.complete
Subject Subject Range Query Range Percent Splice Strand
sau-RD 728..1609 17..900 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:18 Download gff for BO07215.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2227069..2227281 17..229 100 -> Plus
2L 2229266..2229393 230..357 100 -> Plus
2L 2229457..2229575 358..476 100 -> Plus
2L 2229638..2229813 477..652 100 -> Plus
2L 2229878..2230123 653..900 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:32 Download gff for BO07215.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2227069..2227281 17..229 100 -> Plus
arm_2L 2229266..2229393 230..357 100 -> Plus
arm_2L 2229457..2229575 358..476 100 -> Plus
arm_2L 2229638..2229813 477..652 100 -> Plus
arm_2L 2229878..2230123 653..900 99   Plus

BO07215.pep Sequence

Translation from 16 to 916

> BO07215.pep
MNRSDGLVRRSVKPRENGGAEGGLNANTPDDNQDALDNLKDQEDNIDDGD
SKETRLTLMEEVLLLGLKDKEGYTSFWNDCISSGLRGCILIELGLRGRVM
IEKSGMRRRGLCTRKLILKSDQQTGDVLLDEALKHIKETDPPETVQSWIE
YLSGETWNPLKLRYQLKNVRERLAKNLVEKGVLTTEKQNFLLFDMTTHPL
SDNVVKCRLVKKIQDSVLSKWVNDPQRMDKRMLALIFLAHASDVIENAFA
PLNDDDYEVAMKRVRELLDLDFEAESAKPNANEILWAVFMAFTKASFLDH

BO07215.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
sau-PE 294 CG7085-PE 1..294 1..294 1520 100 Plus
sau-PA 294 CG7085-PA 1..294 1..294 1520 100 Plus
sau-PD 294 CG7085-PD 1..294 1..294 1520 100 Plus