Clone BO07216 Report

Search the DGRC for BO07216

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:72
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG8520-RA
Protein status:BO07216.pep: validated full length
Sequenced Size:1408

Clone Sequence Records

BO07216.3prime Sequence

865 bp (743 high quality bases) assembled on 2005-12-04

> BO07216.3prime
ATGGTCTAGAAAGCTTGCTCGATGTTTGGCCCACTGCTCCCAGTACTCCC
TCTTCTGCATTTCATAGAGTCGAGATAGTGTGCGATCAAAGGCGAACAGC
TCTTCCTCGCCGGTGAAAAAACTGGCTTTGGATTCTTTTATATTTAGATC
GTCCATTAGGGTTCGCTCAGAATCGGACAGAGTTTTGGAACCTCCAGTAA
AGCTGAACAAGTTTTCCAGCGCAACGTCGGATGATATCACCACACGCACT
CGGTTATTGTAAAGGGTATCTATGAGCGTGATAAATCGTCGCATCTGTGC
CTTCACATCAAGGGTCAGCTGGGGCACATCTCGGATGAGGACGGTGTGAA
AGAATTGCGATATCTGTAAGAAATCACTGCCAGCCAAAGGGCGATCACAG
AGTTCCGAGAAGGTGCTGTCCAGTACCTGGCCACACGTGCGATTGAAGGT
CAGATCTCTTCCGAAATGAGTCAGGGTTCGCGGCCGGATAATATCGTTTT
CTTCGGCGCACAGGATCTTGAACATGCGATTCATACTGCCGTCCGCATCC
GTTTGGCCTTTGACGAAGTAGTTGGTGTCACCAGATTGGGCTATACGTCG
GTAGTCAATAGAATCCAACTGGGACACCTTACAGCGACGCTGAAGTAACG
CAATGAAGGGCAGAAAGTTCGTGCGCTGCAGTCCGTTCTTGTACAGATCC
TCTGGATGCCGATTGCTGGTGGCCACAACCACAATGCCATGGCGGAAAAG
GTGCGTAAACAATCTCTTTAGCACCATGGCGTCGGCTATGTCCGTCACCT
GAAATTCATCGAAGCAAATCAACCAGGACTCACTGGGCATCAGGTCAGCA
ACCGGTTTTGTGGGA

BO07216.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG8520-PA 1377 CG8520-RA 528..1374 865..19 4185 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG8520-RB 1734 CG8520-RB 677..1523 865..19 4205 99.8 Minus
CG8520-RA 2134 CG8520-RA 1077..1923 865..19 4205 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12424294..12424768 865..391 2345 99.6 Minus
2R 25286936 2R 12424823..12425074 390..139 1260 100 Minus
2R 25286936 2R 12425129..12425248 138..19 600 100 Minus
Blast to na_te.dros performed on 2015-02-12 09:57:00 has no hits.

BO07216.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:33 Download gff for BO07216.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8520-PA 529..1377 16..864 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:42 Download gff for BO07216.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8520-PA 529..1377 16..864 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:44:08 Download gff for BO07216.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8520-RA 1078..1927 15..864 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:55:55 Download gff for BO07216.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8520-RA 1078..1927 15..864 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:55:55 Download gff for BO07216.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12424295..12424768 391..864 99 -> Minus
2R 12424823..12425074 139..390 100 -> Minus
2R 12425129..12425252 15..138 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:44:08 Download gff for BO07216.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8311800..8312273 391..864 99 -> Minus
arm_2R 8312328..8312579 139..390 100 -> Minus
arm_2R 8312634..8312757 15..138 98   Minus

BO07216.5prime Sequence

943 bp (848 high quality bases) assembled on 2005-12-04

> BO07216.5prime
GAAGTTATCAGTCGACATGTTCACCTACCAACTGGGGCTTGTGGTCCGCT
GTGCGCGGCAGAAGCCGCTGCTCCTATGGGCGCCCGCCTGCCACATGAGC
GGTCTCAGTCCGCTGAAGGAATATGAGAAGCGTGTTAGTTCTGGCCAACT
GATGACCGACAACAGGCAGCTGCAGACGATGAAGGAGCTGGATGCGCTGT
ACCACAAGATTCAGGGGTATAAACCCAGCTACAGGGCGGGCGGTGGCGGC
GGAGGATTCTTCAGTTCAATCTTTGGTAGGAAATCTTCCACCGAAGATGA
CGATCAGGATGATCCTAACGCTGGCAGTCACGCTCCTCAGGGTCTGTACC
TGTACGGCAGCGTGGGTGTGGGCAAGACCACTCTGATGGACCTGTTCTTC
GACTGCTGTACCCAAATTCATCGAAAGCAGCGCGTCCATTTTACTTCGTT
CATGAACACCGTGCACACCCGCATCCACGAGGCCAAGCAGAGACAAGGAC
CTGTTGACCGTGCCTTTAATTCTGAAAAACCAGCACCATTTGATCCCACA
AAACCGGTTGCTGACCTGATTGCCAGTGAGTCCTGGTTGATTTGCTTCGA
TGAATTTCAGGTGACGGACATAGCCGACGCCATGGTGCTAAAGAGATTGT
TTACGCACCTTTTCCGCCATGGCATTGTGGTTGTGGCCACCAGCAATCGG
CATCCAGAGGATCTGTACAAGAACGGACTGCAGCGCACGAACTTTCTGCC
CTTCATTGCGTTACTTCAGCGTCGCTGTAAGGTGTCCCAGTTGGATTCTA
TTGACTACCGACGTATAGCCCAATCTGGTGACACCAACTACTTCGTCAAA
GGCCAAACGGATGCGGACGGCAGTATGAATCGCATGTTCAAGATCCTGTG
CGCCGAAGAAAACGATATTATCCGGCCGCGAACCCTGACTCAT

BO07216.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG8520-PA 1377 CG8520-RA 1..927 17..943 4635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG8520-RB 1734 CG8520-RB 150..1076 17..943 4635 100 Plus
CG8520-RA 2134 CG8520-RA 550..1476 17..943 4635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:41:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12424166..12424693 416..943 2640 100 Plus
2R 25286936 2R 12423710..12424108 17..415 1995 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:41:58 has no hits.

BO07216.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:35 Download gff for BO07216.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8520-PA 1..927 17..943 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:43 Download gff for BO07216.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8520-PA 1..927 17..943 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:24:02 Download gff for BO07216.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8520-RA 541..1476 9..943 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:46:35 Download gff for BO07216.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8520-RA 541..1476 9..943 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:46:35 Download gff for BO07216.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12423701..12424108 9..415 99 -> Plus
2R 12424166..12424693 416..943 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:24:02 Download gff for BO07216.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8311206..8311613 9..415 99 -> Plus
arm_2R 8311671..8312198 416..943 100   Plus

BO07216.complete Sequence

1408 bp (1408 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630707

> BO07216.complete
GAAGTTATCAGTCGACATGTTCACCTACCAACTGGGGCTTGTGGTCCGCT
GTGCGCGGCAGAAGCCGCTGCTCCTATGGGCGCCCGCCTGCCACATGAGC
GGTCTCAGTCCGCTGAAGGAATATGAGAAGCGTGTTAGTTCTGGCCAACT
GATGACCGACAACAGGCAGCTGCAGACGATGAAGGAGCTGGATGCGCTGT
ACCACAAGATTCAGGGGTATAAACCCAGCTACAGGGCGGGCGGTGGCGGC
GGAGGATTCTTCAGTTCAATCTTTGGTAGGAAATCTTCCACCGAAGATGA
CGATCAGGATGATCCTAACGCTGGCAGTCACGCTCCTCAGGGTCTGTACC
TGTACGGCAGCGTGGGTGTGGGCAAGACCACTCTGATGGACCTGTTCTTC
GACTGCTGTACCCAAATTCATCGAAAGCAGCGCGTCCATTTTACTTCGTT
CATGAACACCGTGCACACCCGCATCCACGAGGCCAAGCAGAGACAAGGAC
CTGTTGACCGTGCCTTTAATTCTGAAAAACCAGCACCATTTGATCCCACA
AAACCGGTTGCTGACCTGATTGCCAGTGAGTCCTGGTTGATTTGCTTCGA
TGAATTTCAGGTGACGGACATAGCCGACGCCATGGTGCTAAAGAGATTGT
TTACGCACCTTTTCCGCCATGGCATTGTGGTTGTGGCCACCAGCAATCGG
CATCCAGAGGATCTGTACAAGAACGGACTGCAGCGCACGAACTTTCTGCC
CTTCATTGCGTTACTTCAGCGTCGCTGTAAGGTGTCCCAGTTGGATTCTA
TTGACTACCGACGTATAGCCCAATCTGGTGACACCAACTACTTCGTCAAA
GGCCAAACGGATGCGGACGGCAGTATGAATCGCATGTTCAAGATCCTGTG
CGCCGAAGAAAACGATATTATCCGGCCGCGAACCCTGACTCATTTCGGAA
GAGATCTGACCTTCAATCGCACGTGTGGCCAGGTACTGGACAGCACCTTC
TCGGAACTCTGTGATCGCCCTTTGGCTGGCAGTGATTTCTTACAGATATC
GCAATTCTTTCACACCGTCCTCATCCGAGATGTGCCCCAGCTGACCCTTG
ATGTGAAGGCACAGATGCGACGATTTATCACGCTCATAGATACCCTTTAC
AATAACCGAGTGCGTGTGGTGATATCATCCGACGTTGCGCTGGAAAACTT
GTTCAGCTTTACTGGAGGTTCCAAAACTCTGTCCGATTCTGAGCGAACCC
TAATGGACGATCTAAATATAAAAGAATCCAAAGCCAGTTTTTTCACCGGC
GAGGAAGAGCTGTTCGCCTTTGATCGCACACTATCTCGACTCTATGAAAT
GCAGAAGAGGGAGTACTGGGAGCAGTGGGCCAAACATCGAGCAAGCTTTC
TAGACCAT

BO07216.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:04:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8520-RB 1377 CG8520-PB 1..1374 17..1390 6870 100 Plus
CG8520-RA 1377 CG8520-PA 1..1374 17..1390 6870 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:04:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG8520-RB 1734 CG8520-RB 150..1523 17..1390 6870 100 Plus
CG8520-RA 2134 CG8520-RA 550..1923 17..1390 6870 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:04:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12424166..12424768 416..1018 3015 100 Plus
2R 25286936 2R 12423710..12424108 17..415 1995 100 Plus
2R 25286936 2R 12424823..12425074 1019..1270 1260 100 Plus
2R 25286936 2R 12425129..12425248 1271..1390 600 100 Plus
Blast to na_te.dros performed on 2014-11-27 21:04:01 has no hits.

BO07216.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:44 Download gff for BO07216.complete
Subject Subject Range Query Range Percent Splice Strand
CG8520-RA 1..1377 17..1393 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:40:00 Download gff for BO07216.complete
Subject Subject Range Query Range Percent Splice Strand
CG8520-RA 487..1873 9..1394 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:16:00 Download gff for BO07216.complete
Subject Subject Range Query Range Percent Splice Strand
CG8520-RA 555..1923 22..1392 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:44 Download gff for BO07216.complete
Subject Subject Range Query Range Percent Splice Strand
CG8520-RA 487..1873 9..1394 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:59 Download gff for BO07216.complete
Subject Subject Range Query Range Percent Splice Strand
CG8520-RA 555..1923 22..1392 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:59 Download gff for BO07216.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12423715..12424108 22..415 100 -> Plus
2R 12424166..12424768 416..1018 100 -> Plus
2R 12424823..12425074 1019..1270 100 -> Plus
2R 12425129..12425248 1271..1392 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:16:00 Download gff for BO07216.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8312634..8312753 1271..1392 98   Plus
arm_2R 8311220..8311613 22..415 100 -> Plus
arm_2R 8311671..8312273 416..1018 100 -> Plus
arm_2R 8312328..8312579 1019..1270 100 -> Plus

BO07216.pep Sequence

Translation from 16 to 1408

> BO07216.pep
MFTYQLGLVVRCARQKPLLLWAPACHMSGLSPLKEYEKRVSSGQLMTDNR
QLQTMKELDALYHKIQGYKPSYRAGGGGGGFFSSIFGRKSSTEDDDQDDP
NAGSHAPQGLYLYGSVGVGKTTLMDLFFDCCTQIHRKQRVHFTSFMNTVH
TRIHEAKQRQGPVDRAFNSEKPAPFDPTKPVADLIASESWLICFDEFQVT
DIADAMVLKRLFTHLFRHGIVVVATSNRHPEDLYKNGLQRTNFLPFIALL
QRRCKVSQLDSIDYRRIAQSGDTNYFVKGQTDADGSMNRMFKILCAEEND
IIRPRTLTHFGRDLTFNRTCGQVLDSTFSELCDRPLAGSDFLQISQFFHT
VLIRDVPQLTLDVKAQMRRFITLIDTLYNNRVRVVISSDVALENLFSFTG
GSKTLSDSERTLMDDLNIKESKASFFTGEEELFAFDRTLSRLYEMQKREY
WEQWAKHRASFLDH

BO07216.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8520-PB 458 CG8520-PB 1..458 1..458 2407 100 Plus
CG8520-PA 458 CG8520-PA 1..458 1..458 2407 100 Plus