Clone Sequence Records
BO07216.3prime Sequence
865 bp (743 high quality bases) assembled on 2005-12-04
> BO07216.3prime
ATGGTCTAGAAAGCTTGCTCGATGTTTGGCCCACTGCTCCCAGTACTCCC
TCTTCTGCATTTCATAGAGTCGAGATAGTGTGCGATCAAAGGCGAACAGC
TCTTCCTCGCCGGTGAAAAAACTGGCTTTGGATTCTTTTATATTTAGATC
GTCCATTAGGGTTCGCTCAGAATCGGACAGAGTTTTGGAACCTCCAGTAA
AGCTGAACAAGTTTTCCAGCGCAACGTCGGATGATATCACCACACGCACT
CGGTTATTGTAAAGGGTATCTATGAGCGTGATAAATCGTCGCATCTGTGC
CTTCACATCAAGGGTCAGCTGGGGCACATCTCGGATGAGGACGGTGTGAA
AGAATTGCGATATCTGTAAGAAATCACTGCCAGCCAAAGGGCGATCACAG
AGTTCCGAGAAGGTGCTGTCCAGTACCTGGCCACACGTGCGATTGAAGGT
CAGATCTCTTCCGAAATGAGTCAGGGTTCGCGGCCGGATAATATCGTTTT
CTTCGGCGCACAGGATCTTGAACATGCGATTCATACTGCCGTCCGCATCC
GTTTGGCCTTTGACGAAGTAGTTGGTGTCACCAGATTGGGCTATACGTCG
GTAGTCAATAGAATCCAACTGGGACACCTTACAGCGACGCTGAAGTAACG
CAATGAAGGGCAGAAAGTTCGTGCGCTGCAGTCCGTTCTTGTACAGATCC
TCTGGATGCCGATTGCTGGTGGCCACAACCACAATGCCATGGCGGAAAAG
GTGCGTAAACAATCTCTTTAGCACCATGGCGTCGGCTATGTCCGTCACCT
GAAATTCATCGAAGCAAATCAACCAGGACTCACTGGGCATCAGGTCAGCA
ACCGGTTTTGTGGGA
BO07216.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8520-PA | 1377 | CG8520-RA | 528..1374 | 865..19 | 4185 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:57:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8520-RB | 1734 | CG8520-RB | 677..1523 | 865..19 | 4205 | 99.8 | Minus |
CG8520-RA | 2134 | CG8520-RA | 1077..1923 | 865..19 | 4205 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:57:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12424294..12424768 | 865..391 | 2345 | 99.6 | Minus |
2R | 25286936 | 2R | 12424823..12425074 | 390..139 | 1260 | 100 | Minus |
2R | 25286936 | 2R | 12425129..12425248 | 138..19 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 09:57:00 has no hits.
BO07216.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:33 Download gff for
BO07216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8520-PA | 529..1377 | 16..864 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:42 Download gff for
BO07216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8520-PA | 529..1377 | 16..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:44:08 Download gff for
BO07216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8520-RA | 1078..1927 | 15..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:55:55 Download gff for
BO07216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8520-RA | 1078..1927 | 15..864 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:55:55 Download gff for
BO07216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12424295..12424768 | 391..864 | 99 | -> | Minus |
2R | 12424823..12425074 | 139..390 | 100 | -> | Minus |
2R | 12425129..12425252 | 15..138 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:44:08 Download gff for
BO07216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8311800..8312273 | 391..864 | 99 | -> | Minus |
arm_2R | 8312328..8312579 | 139..390 | 100 | -> | Minus |
arm_2R | 8312634..8312757 | 15..138 | 98 | | Minus |
BO07216.5prime Sequence
943 bp (848 high quality bases) assembled on 2005-12-04
> BO07216.5prime
GAAGTTATCAGTCGACATGTTCACCTACCAACTGGGGCTTGTGGTCCGCT
GTGCGCGGCAGAAGCCGCTGCTCCTATGGGCGCCCGCCTGCCACATGAGC
GGTCTCAGTCCGCTGAAGGAATATGAGAAGCGTGTTAGTTCTGGCCAACT
GATGACCGACAACAGGCAGCTGCAGACGATGAAGGAGCTGGATGCGCTGT
ACCACAAGATTCAGGGGTATAAACCCAGCTACAGGGCGGGCGGTGGCGGC
GGAGGATTCTTCAGTTCAATCTTTGGTAGGAAATCTTCCACCGAAGATGA
CGATCAGGATGATCCTAACGCTGGCAGTCACGCTCCTCAGGGTCTGTACC
TGTACGGCAGCGTGGGTGTGGGCAAGACCACTCTGATGGACCTGTTCTTC
GACTGCTGTACCCAAATTCATCGAAAGCAGCGCGTCCATTTTACTTCGTT
CATGAACACCGTGCACACCCGCATCCACGAGGCCAAGCAGAGACAAGGAC
CTGTTGACCGTGCCTTTAATTCTGAAAAACCAGCACCATTTGATCCCACA
AAACCGGTTGCTGACCTGATTGCCAGTGAGTCCTGGTTGATTTGCTTCGA
TGAATTTCAGGTGACGGACATAGCCGACGCCATGGTGCTAAAGAGATTGT
TTACGCACCTTTTCCGCCATGGCATTGTGGTTGTGGCCACCAGCAATCGG
CATCCAGAGGATCTGTACAAGAACGGACTGCAGCGCACGAACTTTCTGCC
CTTCATTGCGTTACTTCAGCGTCGCTGTAAGGTGTCCCAGTTGGATTCTA
TTGACTACCGACGTATAGCCCAATCTGGTGACACCAACTACTTCGTCAAA
GGCCAAACGGATGCGGACGGCAGTATGAATCGCATGTTCAAGATCCTGTG
CGCCGAAGAAAACGATATTATCCGGCCGCGAACCCTGACTCAT
BO07216.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8520-PA | 1377 | CG8520-RA | 1..927 | 17..943 | 4635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:42:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8520-RB | 1734 | CG8520-RB | 150..1076 | 17..943 | 4635 | 100 | Plus |
CG8520-RA | 2134 | CG8520-RA | 550..1476 | 17..943 | 4635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:41:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12424166..12424693 | 416..943 | 2640 | 100 | Plus |
2R | 25286936 | 2R | 12423710..12424108 | 17..415 | 1995 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:41:58 has no hits.
BO07216.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:35 Download gff for
BO07216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8520-PA | 1..927 | 17..943 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:43 Download gff for
BO07216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8520-PA | 1..927 | 17..943 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:24:02 Download gff for
BO07216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8520-RA | 541..1476 | 9..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:46:35 Download gff for
BO07216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8520-RA | 541..1476 | 9..943 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:46:35 Download gff for
BO07216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12423701..12424108 | 9..415 | 99 | -> | Plus |
2R | 12424166..12424693 | 416..943 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:24:02 Download gff for
BO07216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8311206..8311613 | 9..415 | 99 | -> | Plus |
arm_2R | 8311671..8312198 | 416..943 | 100 | | Plus |
BO07216.complete Sequence
1408 bp (1408 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630707
> BO07216.complete
GAAGTTATCAGTCGACATGTTCACCTACCAACTGGGGCTTGTGGTCCGCT
GTGCGCGGCAGAAGCCGCTGCTCCTATGGGCGCCCGCCTGCCACATGAGC
GGTCTCAGTCCGCTGAAGGAATATGAGAAGCGTGTTAGTTCTGGCCAACT
GATGACCGACAACAGGCAGCTGCAGACGATGAAGGAGCTGGATGCGCTGT
ACCACAAGATTCAGGGGTATAAACCCAGCTACAGGGCGGGCGGTGGCGGC
GGAGGATTCTTCAGTTCAATCTTTGGTAGGAAATCTTCCACCGAAGATGA
CGATCAGGATGATCCTAACGCTGGCAGTCACGCTCCTCAGGGTCTGTACC
TGTACGGCAGCGTGGGTGTGGGCAAGACCACTCTGATGGACCTGTTCTTC
GACTGCTGTACCCAAATTCATCGAAAGCAGCGCGTCCATTTTACTTCGTT
CATGAACACCGTGCACACCCGCATCCACGAGGCCAAGCAGAGACAAGGAC
CTGTTGACCGTGCCTTTAATTCTGAAAAACCAGCACCATTTGATCCCACA
AAACCGGTTGCTGACCTGATTGCCAGTGAGTCCTGGTTGATTTGCTTCGA
TGAATTTCAGGTGACGGACATAGCCGACGCCATGGTGCTAAAGAGATTGT
TTACGCACCTTTTCCGCCATGGCATTGTGGTTGTGGCCACCAGCAATCGG
CATCCAGAGGATCTGTACAAGAACGGACTGCAGCGCACGAACTTTCTGCC
CTTCATTGCGTTACTTCAGCGTCGCTGTAAGGTGTCCCAGTTGGATTCTA
TTGACTACCGACGTATAGCCCAATCTGGTGACACCAACTACTTCGTCAAA
GGCCAAACGGATGCGGACGGCAGTATGAATCGCATGTTCAAGATCCTGTG
CGCCGAAGAAAACGATATTATCCGGCCGCGAACCCTGACTCATTTCGGAA
GAGATCTGACCTTCAATCGCACGTGTGGCCAGGTACTGGACAGCACCTTC
TCGGAACTCTGTGATCGCCCTTTGGCTGGCAGTGATTTCTTACAGATATC
GCAATTCTTTCACACCGTCCTCATCCGAGATGTGCCCCAGCTGACCCTTG
ATGTGAAGGCACAGATGCGACGATTTATCACGCTCATAGATACCCTTTAC
AATAACCGAGTGCGTGTGGTGATATCATCCGACGTTGCGCTGGAAAACTT
GTTCAGCTTTACTGGAGGTTCCAAAACTCTGTCCGATTCTGAGCGAACCC
TAATGGACGATCTAAATATAAAAGAATCCAAAGCCAGTTTTTTCACCGGC
GAGGAAGAGCTGTTCGCCTTTGATCGCACACTATCTCGACTCTATGAAAT
GCAGAAGAGGGAGTACTGGGAGCAGTGGGCCAAACATCGAGCAAGCTTTC
TAGACCAT
BO07216.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:04:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8520-RB | 1377 | CG8520-PB | 1..1374 | 17..1390 | 6870 | 100 | Plus |
CG8520-RA | 1377 | CG8520-PA | 1..1374 | 17..1390 | 6870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:04:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8520-RB | 1734 | CG8520-RB | 150..1523 | 17..1390 | 6870 | 100 | Plus |
CG8520-RA | 2134 | CG8520-RA | 550..1923 | 17..1390 | 6870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:04:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12424166..12424768 | 416..1018 | 3015 | 100 | Plus |
2R | 25286936 | 2R | 12423710..12424108 | 17..415 | 1995 | 100 | Plus |
2R | 25286936 | 2R | 12424823..12425074 | 1019..1270 | 1260 | 100 | Plus |
2R | 25286936 | 2R | 12425129..12425248 | 1271..1390 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:04:01 has no hits.
BO07216.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:44 Download gff for
BO07216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8520-RA | 1..1377 | 17..1393 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:40:00 Download gff for
BO07216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8520-RA | 487..1873 | 9..1394 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:16:00 Download gff for
BO07216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8520-RA | 555..1923 | 22..1392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:44 Download gff for
BO07216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8520-RA | 487..1873 | 9..1394 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:59 Download gff for
BO07216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8520-RA | 555..1923 | 22..1392 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:59 Download gff for
BO07216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12423715..12424108 | 22..415 | 100 | -> | Plus |
2R | 12424166..12424768 | 416..1018 | 100 | -> | Plus |
2R | 12424823..12425074 | 1019..1270 | 100 | -> | Plus |
2R | 12425129..12425248 | 1271..1392 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:16:00 Download gff for
BO07216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8312634..8312753 | 1271..1392 | 98 | | Plus |
arm_2R | 8311220..8311613 | 22..415 | 100 | -> | Plus |
arm_2R | 8311671..8312273 | 416..1018 | 100 | -> | Plus |
arm_2R | 8312328..8312579 | 1019..1270 | 100 | -> | Plus |
BO07216.pep Sequence
Translation from 16 to 1408
> BO07216.pep
MFTYQLGLVVRCARQKPLLLWAPACHMSGLSPLKEYEKRVSSGQLMTDNR
QLQTMKELDALYHKIQGYKPSYRAGGGGGGFFSSIFGRKSSTEDDDQDDP
NAGSHAPQGLYLYGSVGVGKTTLMDLFFDCCTQIHRKQRVHFTSFMNTVH
TRIHEAKQRQGPVDRAFNSEKPAPFDPTKPVADLIASESWLICFDEFQVT
DIADAMVLKRLFTHLFRHGIVVVATSNRHPEDLYKNGLQRTNFLPFIALL
QRRCKVSQLDSIDYRRIAQSGDTNYFVKGQTDADGSMNRMFKILCAEEND
IIRPRTLTHFGRDLTFNRTCGQVLDSTFSELCDRPLAGSDFLQISQFFHT
VLIRDVPQLTLDVKAQMRRFITLIDTLYNNRVRVVISSDVALENLFSFTG
GSKTLSDSERTLMDDLNIKESKASFFTGEEELFAFDRTLSRLYEMQKREY
WEQWAKHRASFLDH
BO07216.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:44:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8520-PB | 458 | CG8520-PB | 1..458 | 1..458 | 2407 | 100 | Plus |
CG8520-PA | 458 | CG8520-PA | 1..458 | 1..458 | 2407 | 100 | Plus |