Clone Sequence Records
BO07217.3prime Sequence
921 bp (899 high quality bases) assembled on 2005-12-04
> BO07217.3prime
ATGGTCTAGAAAGCTTGCAGGCTTGGCAGTCTGAGCCTGGCCAGGATTTA
TGCCACTGGCCGTGGAAGTGGTAGCCTCCGTTTCCTCACCGGGCAGCGTT
TTGTTGAGTATCTGGTGGAAGTGCTCCCCGAACACGGCGTGGTTGTAGGA
CACCAGACGACGGAACGAGGCGATAAATGCAACCAGCTCCTCTTGGTAGT
CCGCGAATCCTGAGGGCGGCGGCGGAATGCTGCCATTGGAGCGCAGTGTT
ACGCGCACATAGCCATCCAATCGTTTGGCCATCAAACTGGGCACCGGCGA
CGTCTTGTTGGCCAGCTTAAGCACCTGGTTCTTGAGCGCCGCCTGGTCGG
CATCACTCAGCGCAGGCAAGTTCTCCTGCTCCAGGGCCTTGTTCACAAAG
GAGCGAATCTGCTCGTAGCAGCTCTCAATGGTAGAGGCCACTTGGTCCTG
GTTCTTGATGTCCTGCACAATGATGTCCAGCTGCTGGGCCAGCTTGATGC
GGTTCTCGCGGCGCTGCGATATGATAGGCATGCCCTGGGCCACCGAGATG
AGCGAGGCGCACAGGATCAAGCGCTGGGCTCGCCAACTTAGGCCGGCGAA
GCGCTCTTTGTCGATGCGCAACAGCTCCGGGAACTCCTTGTCGGCCGGAT
AGTCAATCAGCTGCATGTAGGCATTGTAAATGGTCTCATCATCGCTGCTA
CCGGACCGGTGACGCTGCAGCCAATCCTCAGTGGCCGGAAAACCAACATT
TCCATGGAACTCGCGCAAGTACTTGCTAAACTTCTCCTTCTCATACTGCA
CCGAATTGGCAGCGATTTCGGTGCGCGCCAGTCGAAGCATAAAGTTGGCC
ATATCCAGCTTCATCAGCGTCATCAGCTCGAGAATGCAGCGAAACGTGTC
CACCACATCGTCGATCTTGCG
BO07217.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16721-PA | 1485 | CG16721-RA | 580..1482 | 921..19 | 4515 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:23:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16721-RB | 2442 | CG16721-RB | 935..1837 | 921..19 | 4515 | 100 | Minus |
| CG16721-RC | 2321 | CG16721-RC | 814..1716 | 921..19 | 4515 | 100 | Minus |
| CG16721-RA | 2546 | CG16721-RA | 1039..1941 | 921..19 | 4515 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:23:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5881934..5882235 | 747..446 | 1510 | 100 | Minus |
| X | 23542271 | X | 5882526..5882786 | 279..19 | 1305 | 100 | Minus |
| X | 23542271 | X | 5881696..5881874 | 921..743 | 880 | 99.4 | Minus |
| X | 23542271 | X | 5882297..5882463 | 445..279 | 835 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:23:52 has no hits.
BO07217.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:35 Download gff for
BO07217.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16721-PA | 580..1485 | 18..921 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:44 Download gff for
BO07217.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16721-PA | 580..1485 | 18..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:47:02 Download gff for
BO07217.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16721-RB | 935..1837 | 19..921 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:51:13 Download gff for
BO07217.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16721-RB | 935..1837 | 19..921 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:51:13 Download gff for
BO07217.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5881935..5882235 | 446..746 | 100 | -> | Minus |
| X | 5882297..5882463 | 279..445 | 100 | -> | Minus |
| X | 5882527..5882786 | 19..278 | 100 | | Minus |
| X | 5881696..5881870 | 747..921 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:47:02 Download gff for
BO07217.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5775729..5775903 | 747..921 | 100 | -> | Minus |
| arm_X | 5775968..5776268 | 446..746 | 100 | -> | Minus |
| arm_X | 5776330..5776496 | 279..445 | 100 | -> | Minus |
| arm_X | 5776560..5776819 | 19..278 | 100 | | Minus |
BO07217.5prime Sequence
891 bp (864 high quality bases) assembled on 2005-12-04
> BO07217.5prime
GAAGTTATCAGTCGACATGGATGCCCAGGAGAATAGGAGTGAACAGTCGG
GACAATCGGGCGACCACGAAGAGCACGAGGAGCGCCGGATCCGTACGGAC
AGCGAGAGTTCCGTGGAAAGCATGACGCGTTTCGTGCTGCCCAGCTTGGA
TGGTACTCCGCCGAAAATTGTGACCCTGGACGAAGTGTCCAGCATGTTCA
AGAATTTGCGCAACATGGAGCTGGCCCACGAGATAGCCCTCAATCCGGAC
TTCAAGCTGCAGAAGTACGAGCCGCCCTCGGATAGTTTGGAGGGCGCCAT
CAAGAAGATGGTGCACAAGGCCTTTTGGGATCTGCTGCGTGTGCAGCTGG
ACCGCCAGCCGCCATCGTATGATCAGGCCATCCGGCTGCTGGCTGAGATC
AAGGAGTGCTTCCCGCAGCTGCTGTCGCCCAACAACGAACGTGCCCTGGC
CCACATCAACGAGGTGCTGGATGACTCCGTCATCCGCCAGCAAGCGGAGC
GGGGTACCCTGGACTTTCGAGCATATGCCAACTTTGTGATCAACATCCTG
TCGCGATCCTGTTCGCCAGCTAGGGACGAAGCAGTGGCCGCTCTGCGCAA
GATCGACGATGTGGTGGACACGTTTCGCTGCATTCTCGAGCTGATGACGC
TGATGAAGCTGGATATGGCCAACTTTATGCTTCGACTGGCGCGCACCGAA
ATCGCTGCCAATTCGGTGCAGTATGAGAAGGAGAAGTTTAGCAAGTACTT
GCGCGAGTTCCATGGAAATGTTGGTTTTCCGGCCACTGAGGATTGGCTGC
AGCGTCACCGGTCCGGTAGCAGCGATGATGAGACATTTACAATGCCTACA
TGCAGCTGATTGACTATCCCCGGCGACAGGAGTTCCCGGAG
BO07217.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16721-PA | 1485 | CG16721-RA | 1..818 | 17..834 | 4090 | 100 | Plus |
| CG16721-PA | 1485 | CG16721-RA | 819..854 | 834..869 | 180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:10:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16721-RC | 2321 | CG16721-RC | 235..1110 | 17..891 | 4280 | 99.4 | Plus |
| CG16721-RA | 2546 | CG16721-RA | 460..1335 | 17..891 | 4280 | 99.4 | Plus |
| CG16721-RB | 2442 | CG16721-RB | 356..1231 | 17..891 | 4280 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:10:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5881384..5881874 | 284..774 | 2440 | 99.8 | Plus |
| X | 23542271 | X | 5881053..5881321 | 17..285 | 1345 | 100 | Plus |
| X | 23542271 | X | 5881934..5882034 | 770..869 | 455 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:10:38 has no hits.
BO07217.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:36 Download gff for
BO07217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16721-PA | 1..876 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:46 Download gff for
BO07217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16721-PA | 1..876 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:35:29 Download gff for
BO07217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16721-RB | 356..1231 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:05:22 Download gff for
BO07217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16721-RB | 356..1231 | 17..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:05:22 Download gff for
BO07217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5881053..5881321 | 17..285 | 100 | -> | Plus |
| X | 5881386..5881870 | 286..770 | 100 | -> | Plus |
| X | 5881935..5882056 | 771..891 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:35:29 Download gff for
BO07217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5775086..5775354 | 17..285 | 100 | -> | Plus |
| arm_X | 5775419..5775903 | 286..770 | 100 | -> | Plus |
| arm_X | 5775968..5776089 | 771..891 | 95 | | Plus |
BO07217.complete Sequence
1516 bp (1516 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630708
> BO07217.complete
GAAGTTATCAGTCGACATGGATGCCCAGGAGAATAGGAGTGAACAGTCGG
GACAATCGGGCGACCACGAAGAGCACGAGGAGCGCCGGATCCGTACGGAC
AGCGAGAGTTCCGTGGAAAGCATGACGCGTTTCGTGCTGCCCAGCTTGGA
TGGTACTCCGCCGAAAATTGTGACCCTGGACGAAGTGTCCAGCATGTTCA
AGAATTTGCGCAACATGGAGCTGGCCCACGAGATAGCCCTCAATCCGGAC
TTCAAGCTGCAGAAGTACGAGCCGCCCTCGGATAGTTTGGAGGGCGCCAT
CAAGAAGATGGTGCACAAGGCCTTTTGGGATCTGCTGCGTGTGCAGCTGG
ACCGCCAGCCGCCATCGTATGATCAGGCCATCCGGCTGCTGGCTGAGATC
AAGGAGTGCTTCCCGCAGCTGCTGTCGCCCAACAACGAACGTGCCCTGGC
CCACATCAACGAGGTGCTGGATGACTCCGTCATCCGCCAGCAAGCGGAGC
GGGGTACCCTGGACTTTCGAGCATATGCCAACTTTGTGATCAACATCCTG
TCGCGATCCTGTTCGCCAGCTAGGGACGAAGCAGTGGCCGCTCTGCGCAA
GATCGACGATGTGGTGGACACGTTTCGCTGCATTCTCGAGCTGATGACGC
TGATGAAGCTGGATATGGCCAACTTTATGCTTCGACTGGCGCGCACCGAA
ATCGCTGCCAATTCGGTGCAGTATGAGAAGGAGAAGTTTAGCAAGTACTT
GCGCGAGTTCCATGGAAATGTTGGTTTTCCGGCCACTGAGGATTGGCTGC
AGCGTCACCGGTCCGGTAGCAGCGATGATGAGACCATTTACAATGCCTAC
ATGCAGCTGATTGACTATCCGGCCGACAAGGAGTTCCCGGAGCTGTTGCG
CATCGACAAAGAGCGCTTCGCCGGCCTAAGTTGGCGAGCCCAGCGCTTGA
TCCTGTGCGCCTCGCTCATCTCGGTGGCCCAGGGCATGCCTATCATATCG
CAGCGCCGCGAGAACCGCATCAAGCTGGCCCAGCAGCTGGACATCATTGT
GCAGGACATCAAGAACCAGGACCAAGTGGCCTCTACCATTGAGAGCTGCT
ACGAGCAGATTCGCTCCTTTGTGAACAAGGCCCTGGAGCAGGAGAACTTG
CCTGCGCTGAGTGATGCCGACCAGGCGGCGCTCAAGAACCAGGTGCTTAA
GCTGGCCAACAAGACGTCGCCGGTGCCCAGTTTGATGGCCAAACGATTGG
ATGGCTATGTGCGCGTAACACTGCGCTCCAATGGCAGCATTCCGCCGCCG
CCCTCAGGATTCGCGGACTACCAAGAGGAGCTGGTTGCATTTATCGCCTC
GTTCCGTCGTCTGGTGTCCTACAACCACGCCGTGTTCGGGGAGCACTTCC
ACCAGATACTCAACAAAACGCTGCCCGGTGAGGAAACGGAGGCTACCACT
TCCACGGCCAGTGGCATAAATCCTGGCCAGGCTCAGACTGCCAAGCCTGC
AAGCTTTCTAGACCAT
BO07217.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:05:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16721-RC | 1485 | CG16721-PC | 1..1482 | 17..1498 | 7410 | 100 | Plus |
| CG16721-RA | 1485 | CG16721-PA | 1..1482 | 17..1498 | 7410 | 100 | Plus |
| CG16721-RB | 1485 | CG16721-PB | 1..1482 | 17..1498 | 7410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:05:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16721-RC | 2321 | CG16721-RC | 235..1716 | 17..1498 | 7410 | 100 | Plus |
| CG16721-RA | 2546 | CG16721-RA | 460..1941 | 17..1498 | 7410 | 100 | Plus |
| CG16721-RB | 2442 | CG16721-RB | 356..1837 | 17..1498 | 7410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:05:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5881384..5881874 | 284..774 | 2440 | 99.8 | Plus |
| X | 23542271 | X | 5881934..5882235 | 770..1071 | 1510 | 100 | Plus |
| X | 23542271 | X | 5881053..5881321 | 17..285 | 1345 | 100 | Plus |
| X | 23542271 | X | 5882526..5882786 | 1238..1498 | 1305 | 100 | Plus |
| X | 23542271 | X | 5882297..5882463 | 1072..1238 | 835 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:05:24 has no hits.
BO07217.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:45 Download gff for
BO07217.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16721-RA | 1..1485 | 17..1499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:40:02 Download gff for
BO07217.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16721-RA | 471..1952 | 17..1498 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:26:43 Download gff for
BO07217.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16721-RB | 356..1837 | 17..1500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:45 Download gff for
BO07217.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16721-RA | 471..1952 | 17..1498 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:40 Download gff for
BO07217.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16721-RB | 356..1837 | 17..1500 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:40 Download gff for
BO07217.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5881053..5881321 | 17..285 | 100 | -> | Plus |
| X | 5881386..5881870 | 286..770 | 100 | -> | Plus |
| X | 5881935..5882235 | 771..1071 | 100 | -> | Plus |
| X | 5882297..5882463 | 1072..1238 | 100 | -> | Plus |
| X | 5882527..5882786 | 1239..1500 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:26:43 Download gff for
BO07217.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5775086..5775354 | 17..285 | 100 | -> | Plus |
| arm_X | 5775419..5775903 | 286..770 | 100 | -> | Plus |
| arm_X | 5775968..5776268 | 771..1071 | 100 | -> | Plus |
| arm_X | 5776330..5776496 | 1072..1238 | 100 | -> | Plus |
| arm_X | 5776560..5776819 | 1239..1500 | 99 | | Plus |
BO07217.pep Sequence
Translation from 16 to 1516
> BO07217.pep
MDAQENRSEQSGQSGDHEEHEERRIRTDSESSVESMTRFVLPSLDGTPPK
IVTLDEVSSMFKNLRNMELAHEIALNPDFKLQKYEPPSDSLEGAIKKMVH
KAFWDLLRVQLDRQPPSYDQAIRLLAEIKECFPQLLSPNNERALAHINEV
LDDSVIRQQAERGTLDFRAYANFVINILSRSCSPARDEAVAALRKIDDVV
DTFRCILELMTLMKLDMANFMLRLARTEIAANSVQYEKEKFSKYLREFHG
NVGFPATEDWLQRHRSGSSDDETIYNAYMQLIDYPADKEFPELLRIDKER
FAGLSWRAQRLILCASLISVAQGMPIISQRRENRIKLAQQLDIIVQDIKN
QDQVASTIESCYEQIRSFVNKALEQENLPALSDADQAALKNQVLKLANKT
SPVPSLMAKRLDGYVRVTLRSNGSIPPPPSGFADYQEELVAFIASFRRLV
SYNHAVFGEHFHQILNKTLPGEETEATTSTASGINPGQAQTAKPASFLDH
BO07217.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:44:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16721-PC | 494 | CG16721-PC | 1..494 | 1..494 | 2514 | 100 | Plus |
| CG16721-PA | 494 | CG16721-PA | 1..494 | 1..494 | 2514 | 100 | Plus |
| CG16721-PB | 494 | CG16721-PB | 1..494 | 1..494 | 2514 | 100 | Plus |
