Clone Sequence Records
BO07218.3prime Sequence
874 bp (775 high quality bases) assembled on 2005-12-04
> BO07218.3prime
ATGGTCTAGAAAGCTTGCGTCCTTGAACTTCCCCAGAACGATGTCCTTGT
AGAAGGGCACGCAATTCATGCGCACATTCAGACGCGCGCACAGCAGGAAA
ATGCCCGATAGCTTGCGATGAATGGAGTATATCTCCTCGGGCGGCGGGCA
CAATCGATGCGCCACCATTGTGGGCACCAGGGCGGCCAATCTTTCGGTGG
TATTCTGTCGACCGAAATCGAAATCACCGTCGTAGCGAAAGATCTCGCCC
AATATCATCACCGCATCCACGTGCGCCTGCTCCATTTGCTTCGTCTCGTA
GCCGGTTAGGAAGCCCATTTCGCGCGACATCTCCAAAACGCCCTGACGAT
TGTTCTCGGCGGCGCTCATGATCACCCGGCGATAGTTGCGGATGAATTCA
TGCCTATAGAAGCGCGTCGAACCGAAGTCGATCAGCATTAGCCGGCGACT
GGGCGCATCGTACAGAAAGTTGGACCAATTCGGATCCGTCTGCATGCACT
CAATCTCGAAGAGCTCGCGCAGGCAGAGCTTCAGCACGGATGCGGCTATG
TGGCGGCGATGCTCGTAGCTCAGATCGAAACACTTATCGAGCGGCACACC
GGGCACCAGTTCGGTGGTCAGAACGCTGGACGTGGTCAGATCGCGCACCA
CACGCGGTACATAGTACTCGGGATAGGGCGCGATCATTTCGCGAAACTTC
TCCGTGTATTCCGCCTCGCGATCATAGTCCACCTCCCATTGCAACTCACG
TTTGGCCACGCGCACCACATTGTCGATGAAGAAACCCTGTGGAAAGACAT
CCCACACCTTCAGCATGCCCACCAAATTGTNCATGTCGCTCTCGATGCTC
TGGGCGACACCGGGATATTGGATC
BO07218.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32649-PA | 1986 | CG32649-RA | 1128..1983 | 874..19 | 4236 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:28:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32649-RA | 2280 | CG32649-RA | 1287..2142 | 874..19 | 4254 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:27:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12898906..12899457 | 19..570 | 2760 | 100 | Plus |
| X | 23542271 | X | 12899523..12899828 | 569..874 | 1504 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:28:00 has no hits.
BO07218.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:37 Download gff for
BO07218.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32649-PA | 1128..1986 | 18..874 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:47 Download gff for
BO07218.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32649-PA | 1128..1986 | 18..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:02:49 Download gff for
BO07218.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32649-RA | 1287..2142 | 19..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:59:54 Download gff for
BO07218.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32649-RA | 1287..2142 | 19..874 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:59:54 Download gff for
BO07218.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12898906..12899455 | 19..568 | 100 | <- | Plus |
| X | 12899523..12899828 | 569..874 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:02:49 Download gff for
BO07218.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12792939..12793488 | 19..568 | 100 | <- | Plus |
| arm_X | 12793556..12793861 | 569..874 | 99 | | Plus |
BO07218.5prime Sequence
860 bp (753 high quality bases) assembled on 2005-12-04
> BO07218.5prime
GAAGTTATCAGTCGACATGTCGCGATCCGCACAAGAAGCTGCGGCGCTGC
TGCGGGGACTGCGGATCTTGTTGGAGGCGTGTGGGCGCGAGCATCTCGCC
CACGGTCGTCATCTGTGGAGCAATTCAAGCATTCGTGAGCTAATCGCCGA
GAATGTGGCGCACACACAGCAGCTGGTGAGAAGTTCCAGTCAAAATCCCA
CCGAGGAGCTGAAAAAACTGCAGCAAACTGTAAAAGAAACGGGCGAAAGG
GGCTACGTGGTGGCCAAAGGTATTTGCTCGCTGCTGGAGACGAAAATCAA
GATGTCCCGCGAGGAATCGGCCATCTCTGAGCCTGCACAAGTCTCCTCAA
TTCGTAAATCCACACCCACGGCACAAAATCCAGCAAGTTGGGACGCCGCC
AACTTGGATATATCATCCATAACGCTGCAGGAGTTCGAGGAGATACTCTC
GCGCCGGAACAAAGATCGTAGTGTTAGCTTGCGCACCCCGGCAACCAAAA
GCAACCAGACCATGCCCAAAAAAGAAACGTCAACCAATCCGGGCATCATT
ACCCAGGACACGGAGTATGTAAACAATGTGCTGCGGTTTGTGGCGGGCGC
CAAGGTGGAGGAGCAGCCACCAGATGCGCAGCCGAAGAAGAAGTCCGACC
AGCCGGCCATTGAAGTGCCCGAACTGAGCAAGGTGGCCAAACAGCGCAAG
GTTCCCTCCTCCCGGATAGGCAGAATGGCCTCCTTTGGCGGCCTGTTCGC
CGGCCTGGGCCTGGGAACCCTCAACGAGCTGACCAAGGGTGCACTCGGCC
TGGGCGGTTCGACCAGCATGCGAGAGGCGTTGCTCAGTCCCCGCCATGCT
GAACGCATCG
BO07218.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32649-PA | 1986 | CG32649-RA | 1..825 | 17..841 | 4125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:41:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32649-RA | 2280 | CG32649-RA | 160..1003 | 17..860 | 4175 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:41:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12900112..12900955 | 860..17 | 4175 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:41:44 has no hits.
BO07218.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:38 Download gff for
BO07218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32649-PA | 1..844 | 17..860 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:49 Download gff for
BO07218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32649-PA | 1..844 | 17..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:03:47 Download gff for
BO07218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32649-RA | 154..1003 | 8..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:20:19 Download gff for
BO07218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32649-RA | 154..1003 | 8..860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:20:19 Download gff for
BO07218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12900112..12900961 | 8..860 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:03:47 Download gff for
BO07218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12794145..12794994 | 8..860 | 99 | | Minus |
BO07218.complete Sequence
2017 bp assembled on 2008-08-14
GenBank Submission: FJ630709
> BO07218.complete
GAAGTTATCAGTCGACATGTCGCGATCCGCACAAGAAGCTGCGGCGCTGC
TGCGGGGACTGCGGATCTTGTTGGAGGCGTGTGGGCGCGAGCATCTCGCC
CACGGTCGTCATCTGTGGAGCAATTCAAGCATTCGTGAGCTAATCGCCGA
GAATGTGGCGCACACACAGCAGCTGGTGAGAAGTTCCAGTCAAAATCCCA
CCGAGGAGCTGAAAAAACTGCAGCAAACTGTAAAAGAAACGGGCGAAAGG
GGCTACGTGGTGGCCAAAGGTATTTGCTCGCTGCTGGAGACGAAAATCAA
GATGTCCCGCGAGGAATCGGCCATCTCTGAGCCTGCACAAGTCTCCTCAA
TTCGTAAATCCACACCCACGGCACAAAATCCAGCAAGTTGGGACGCCGCC
AACTTGGATATATCATCCATAACGCTGCAGGAGTTCGAGGAGATACTCTC
GCGCCGGAACAAAGATCGTAGTGTTAGCTTGCGCACCCCGGCAACCAAAA
GCAACCAGACCATGCCCAAAAAAGAAACGTCAACCAATCCGGGCATCATT
ACCCAGGACACGGAGTATGTAAACAATGTGCTGCGGTTTGTGGCGGGCGC
CAAGGTGGAGGAGCAGCCACCAGATGCGCAGCCGAAGAAGAAGTCCGACC
AGCCGGCCATTGAAGTGCCCGAACTGAGCAAGGTGGCCAAACAGCGCAAG
GTTCCCTCCTCCCGGATAGGCAGAATGGCCTCCTTTGGCGGCCTGTTCGC
CGGCCTGGGCCTGGGAACCCTCAACGAGCTGACCAAGGGTGCACTCGGCC
TGGGCGGTTCGACCAGCATGCGAGAGGCGTTGCTCAGTCCCGCCAATGCT
GAACGCATCGTGGACACGCTATGCAAGGTGAGAGGAGCTGCCCTGAAGAT
CGGACAAATCCTGAGCATACAAGATTCCAGCGTTGTGTCGCCGCAACTGG
CCAAGGCGTTTGAGCGGGTGCGTCAGGCGGCGGACTATATGCCCGATTGG
CAGGTCGAACGCGTGATGAACACCCAATTGGGTGCCGATTGGCGACAGCG
TCTCAAGAGTTTCGAGGACAAACCCTTTGCGGCTGCCTCCATTGGCCAGG
TGCATCGGGCAACGCTGAGCGATGGCATGGATGTGGCCATTAAGATCCAA
TATCCCGGTGTCGCCCAGAGCATCGAGAGCGACATTGACAATTTGGTGGG
CATGCTGAAGGTGTGGGATGTCTTTCCACAGGGTTTCTTCATCGACAATG
TGGTGCGCGTGGCCAAACGTGAGTTGCAATGGGAGGTGGACTATGATCGC
GAGGCGGAATACACGGAGAAGTTTCGCGAAATGATCGCGCCCTATCCCGA
GTACTATGTACCGCGTGTGGTGCGCGATCTGACCACGTCCAGCGTTCTGA
CCACCGAACTGGTGCCCGGTGTGCCGCTCGATAAGTGTTTCGATCTGAGC
TACGAGCATCGCCGCCACATAGCCGCATCCGTGCTGAAGCTCTGCCTGCG
CGAGCTCTTCGAGATTGAGTGCATGCAGACGGATCCGAATTGGTCCAACT
TTCTGTACGATGCGCCCAGTCGCCGGCTAATGCTGATCGACTTCGGTTCG
ACGCGCTTCTATAGGCATGAATTCATCCGCAACTATCGCCGGGTGATCAT
GAGCGCCGCCGAGAACAATCGTCAGGGCGTTTTGGAGATGTCGCGCGAAA
TGGGCTTCCTAACCGGCTACGAGACGAAGCAAATGGAGCAGGCGCACGTG
GATGCGGTGATGATATTGGGCGAGATCTTTCGCTACGACGGTGATTTCGA
TTTCGGTCGACAGAATACCACCGAAAGATTGGCCGCCCTGGTGCCCACAA
TGGTGGCGCATCGATTGTGCCCGCCGCCCGAGGAGATATACTCCATTCAT
CGCAAGCTATCGGGCATTTTCCTGCTGTGCGCGCGTCTGAATGTGCGCAT
GAATTGCGTGCCCTTCTACAAGGACATCGTTCTGGGGAAGTTCAAGGACG
CAAGCTTTCTAGACCAT
BO07218.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:22:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32649-RA | 1986 | CG32649-PA | 1..1983 | 17..1999 | 9915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:22:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32649-RA | 2280 | CG32649-RA | 160..2142 | 17..1999 | 9915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:22:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12899523..12900955 | 1449..17 | 7165 | 100 | Minus |
| X | 23542271 | X | 12898906..12899457 | 1999..1448 | 2760 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:22:50 has no hits.
BO07218.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:43:22 Download gff for
BO07218.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32649-RA | 116..2104 | 8..1999 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:51:05 Download gff for
BO07218.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32649-RA | 160..2142 | 17..2001 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:08 Download gff for
BO07218.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32649-RA | 122..2104 | 17..2001 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:27 Download gff for
BO07218.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32649-RA | 160..2142 | 17..2001 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:27 Download gff for
BO07218.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12898904..12899455 | 1450..2001 | 99 | <- | Minus |
| X | 12899523..12900955 | 17..1449 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:51:05 Download gff for
BO07218.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12792937..12793488 | 1450..2001 | 99 | <- | Minus |
| arm_X | 12793556..12794988 | 17..1449 | 100 | | Minus |
BO07218.pep Sequence
Translation from 16 to 2017
> BO07218.pep
MSRSAQEAAALLRGLRILLEACGREHLAHGRHLWSNSSIRELIAENVAHT
QQLVRSSSQNPTEELKKLQQTVKETGERGYVVAKGICSLLETKIKMSREE
SAISEPAQVSSIRKSTPTAQNPASWDAANLDISSITLQEFEEILSRRNKD
RSVSLRTPATKSNQTMPKKETSTNPGIITQDTEYVNNVLRFVAGAKVEEQ
PPDAQPKKKSDQPAIEVPELSKVAKQRKVPSSRIGRMASFGGLFAGLGLG
TLNELTKGALGLGGSTSMREALLSPANAERIVDTLCKVRGAALKIGQILS
IQDSSVVSPQLAKAFERVRQAADYMPDWQVERVMNTQLGADWRQRLKSFE
DKPFAAASIGQVHRATLSDGMDVAIKIQYPGVAQSIESDIDNLVGMLKVW
DVFPQGFFIDNVVRVAKRELQWEVDYDREAEYTEKFREMIAPYPEYYVPR
VVRDLTTSSVLTTELVPGVPLDKCFDLSYEHRRHIAASVLKLCLRELFEI
ECMQTDPNWSNFLYDAPSRRLMLIDFGSTRFYRHEFIRNYRRVIMSAAEN
NRQGVLEMSREMGFLTGYETKQMEQAHVDAVMILGEIFRYDGDFDFGRQN
TTERLAALVPTMVAHRLCPPPEEIYSIHRKLSGIFLLCARLNVRMNCVPF
YKDIVLGKFKDASFLDH
BO07218.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:03:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32649-PA | 661 | CG32649-PA | 1..661 | 1..661 | 3378 | 100 | Plus |
| CG3608-PB | 518 | CG3608-PB | 80..369 | 278..563 | 208 | 24.7 | Plus |
| CG3608-PA | 518 | CG3608-PA | 80..369 | 278..563 | 208 | 24.7 | Plus |
| CG7616-PB | 557 | CG7616-PB | 99..339 | 272..511 | 168 | 21.8 | Plus |
| CG7616-PA | 557 | CG7616-PA | 99..339 | 272..511 | 168 | 21.8 | Plus |
