Clone Sequence Records
BO07220.3prime Sequence
948 bp (869 high quality bases) assembled on 2005-12-04
> BO07220.3prime
ATGGTCTAGAAAGCTTGCGGTTTTCTTCCACGAGTAATACATTTCCATAG
GTTTGTTTACCTTCCAGAATTTGTCGTTGACCTGGTGCAACGTCTGGTTG
CCATTCAGGATAACCAACTGCTGTGGCTGTGGAGCGACGTAGATGCAAAA
GTTGAGCACGCGACAAGCCTCTGGCAAATCGGCGCCCAGGTCGAGCGTGA
GCCGCATGGCCAGATACTTGCTGAGATGATCGACGGTGGCATTTGCCGTG
GTCTTGATGTAGCGCACACAGTTCTCCTTGAGTGCCCGTATGAGCTGGTT
GTCCGCCGACATCTCCGTGGGATGGGGCTTGAAGACGAGCTCGATTTCAT
CGTTGATGCCCAGCTCGCCATTGCCCTCGCCCTCTGTGTCGATGTTGGAG
TCACCCTCGGTGCGGCAGTCCATCTGTGAATCCGACTCGGACTCCTCGGA
CCGCTCCGAAGTCAGCACCGACATGGCGCGCTTCGGCTTGGAGCTGCTCG
AGTTGGAGGGCACTGGTGACGGAGTGCTCCGCACCGAGGGGGGATTGGAA
GCGTCGTCCACCTGCATCCGAGTGGCGGATGTGCTGGCGCCCGAGTTTGC
CGACGACGAGGGCGCAGCATTCGAGGCGCTCGTTATGGCCGATGCTGCCG
ATGTGCCCGAATGACCCGGATCCCGGTTCTCGCGATCAATGCTGTTGGTA
TTGCTGTTGCTATCATTGGAGGCTGTGTCGTGGACGTGCATTTGGTTGGA
GGCATTGCGACCCACAGCAGTGGGTGCACCAGGTGCAGGCGGAGCTGCGA
CATTGGCAGCACCATTTCCATTACCACCTCCACCACCACCACCGCCGCCG
CCCTTGGTGCGGAATCTTTGTGGCCGGTTCTGGGACTGCAGCTTGATGCC
CTCGTTGATGGAGTTGACCAGCGCCTGCTGCGACTGCGTCTGGGTGAA
BO07220.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5595-PA | 1308 | Sce-RA | 381..1305 | 943..19 | 4625 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:26:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sce-RA | 1542 | CG5595-RA | 490..1419 | 948..19 | 4635 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:26:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27680651..27681540 | 59..948 | 4435 | 99.9 | Plus |
| 3R | 32079331 | 3R | 27680554..27680597 | 19..62 | 220 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 17:26:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| F-element | 4708 | F-element F 4708bp | 4291..4331 | 718..676 | 111 | 76.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2296..2451 | 744..578 | 109 | 54.5 | Minus |
BO07220.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:42 Download gff for
BO07220.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sce-PA | 378..1308 | 15..946 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:52 Download gff for
BO07220.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5595-PA | 378..1308 | 15..946 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:05:31 Download gff for
BO07220.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sce-RA | 490..1425 | 12..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:33:45 Download gff for
BO07220.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sce-RA | 490..1425 | 12..948 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:33:45 Download gff for
BO07220.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27680548..27680595 | 12..60 | 95 | <- | Plus |
| 3R | 27680653..27681540 | 61..948 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:05:31 Download gff for
BO07220.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23506270..23506317 | 12..60 | 95 | <- | Plus |
| arm_3R | 23506375..23507262 | 61..948 | 99 | | Plus |
BO07220.5prime Sequence
902 bp (774 high quality bases) assembled on 2005-12-04
> BO07220.5prime
GAAGTTATCAGTCGACATGACGTCGCTGGACCCGGCGCCAAACAAAACGT
GGGAGCTGTCGCTGTACGAGCTGCAGCGCAAGCCGCAGGAGGTGATCACG
GACAGCACGGAAATCGCGGTGTCCCCGCGGAGCCTCCACAGCGAACTGAT
GTGTCCCATCTGCCTGGACATGCTGAAGAAGACGATGACGACGAAGGAGT
GCCTGCACCGCTTCTGCTCCGACTGCATTGTGACCGCCCTGCGTTCGGGC
AATAAGGAGTGCCCCACGTGCCGCAAGAAGCTCGTCTCCAAGCGCTCCCT
GCGCGCCGATCCCAACTTCGACCTGCTCATCTCGAAGATCTACCCCAGTC
GCGAGGAATACGAGGCCATCCAGGAGAAGGTGATGGCTAAGTTCAACCAG
ACGCAGTCGCAGCAGGCGCTGGTCAACTCCATCAACGAGGGCATCAAGCT
GCAGTCCCAGAACCGGCCACAAAGATTCCGCACCAAGGGCGGCGGCGGTG
GTGGTGGTGGAGGTGGTAATGGAAATGGTGCTGCCAATGTCGCAGCTCCG
CCTGCACCTGGTGCACCCACTGCTGTGGGTCGCAATGCCTCCAACCAAAT
GCACGTCCACGACACAGCCTCCAATGATAGCAACAGCAATACCAACAGCA
TTGATCGCGAGAACCGGGATCCGGGTCATTCGGGCACATCGGCAGCATCG
GCCATAACGAGCGCCTCGAATGCTGCGCCCTCGTCGTCGGCAAACTCGGG
CGCCAGCACATCCGCCACTCGGATGCAGGTGGACGACGCTTCCAATCCCC
CCTCGGTGCGGAGCACTCCGTCACCAGTGCCCTCCAACTCGAGCAGCTCC
AAGCCGAAGCGCGCCATGTCNGTGCTGACTTCGGAGCGGTCCGAGGGAGT
CG
BO07220.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5595-PA | 1308 | Sce-RA | 1..880 | 17..896 | 4381 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:10:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sce-RA | 1542 | CG5595-RA | 115..994 | 17..896 | 4389 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:10:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27681036..27681915 | 896..17 | 4389 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-12 07:10:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| F-element | 4708 | F-element F 4708bp | 4291..4331 | 622..664 | 111 | 76.7 | Plus |
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 557..596 | 155..194 | 110 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2296..2451 | 596..762 | 109 | 54.5 | Plus |
BO07220.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:42 Download gff for
BO07220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sce-PA | 1..884 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:54 Download gff for
BO07220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5595-PA | 1..884 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:35:31 Download gff for
BO07220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sce-RA | 109..998 | 11..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:05:52 Download gff for
BO07220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sce-RA | 109..998 | 11..902 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:05:52 Download gff for
BO07220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27681030..27681921 | 11..902 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:35:31 Download gff for
BO07220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23506752..23507643 | 11..902 | 99 | | Minus |
BO07220.complete Sequence
1339 bp (1339 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630710
> BO07220.complete
GAAGTTATCAGTCGACATGACGTCGCTGGACCCGGCGCCAAACAAAACGT
GGGAGCTGTCGCTGTACGAGCTGCAGCGCAAGCCGCAGGAGGTGATCACG
GACAGCACGGAAATCGCGGTGTCCCCGCGGAGCCTCCACAGCGAACTGAT
GTGTCCCATCTGCCTGGACATGCTGAAGAAGACGATGACGACGAAGGAGT
GCCTGCACCGCTTCTGCTCCGACTGCATTGTGACCGCCCTGCGTTCGGGC
AATAAGGAGTGCCCCACGTGCCGCAAGAAGCTCGTCTCCAAGCGCTCCCT
GCGCGCCGATCCCAACTTCGACCTGCTCATCTCGAAGATCTACCCCAGTC
GCGAGGAATACGAGGCCATCCAGGAGAAGGTGATGGCTAAGTTCAACCAG
ACGCAGTCGCAGCAGGCGCTGGTCAACTCCATCAACGAGGGCATCAAGCT
GCAGTCCCAGAACCGGCCACAAAGATTCCGCACCAAGGGCGGCGGCGGTG
GTGGTGGTGGAGGTGGTAATGGAAATGGTGCTGCCAATGTCGCAGCTCCG
CCTGCACCTGGTGCACCCACTGCTGTGGGTCGCAATGCCTCCAACCAAAT
GCACGTCCACGACACAGCCTCCAATGATAGCAACAGCAATACCAACAGCA
TTGATCGCGAGAACCGGGATCCGGGTCATTCGGGCACATCGGCAGCATCG
GCCATAACGAGCGCCTCGAATGCTGCGCCCTCGTCGTCGGCAAACTCGGG
CGCCAGCACATCCGCCACTCGGATGCAGGTGGACGACGCTTCCAATCCCC
CCTCGGTGCGGAGCACTCCGTCACCAGTGCCCTCCAACTCGAGCAGCTCC
AAGCCGAAGCGCGCCATGTCGGTGCTGACTTCGGAGCGGTCCGAGGAGTC
CGAGTCGGATTCACAGATGGACTGCCGCACCGAGGGTGACTCCAACATCG
ACACAGAGGGCGAGGGCAATGGCGAGCTGGGCATCAACGATGAAATCGAG
CTCGTCTTCAAGCCCCATCCCACGGAGATGTCGGCGGACAACCAGCTCAT
ACGGGCACTCAAGGAGAACTGTGTGCGCTACATCAAGACCACGGCAAATG
CCACCGTCGATCATCTCAGCAAGTATCTGGCCATGCGGCTCACGCTCGAC
CTGGGCGCCGATTTGCCAGAGGCTTGTCGCGTGCTCAACTTTTGCATCTA
CGTCGCTCCACAGCCACAGCAGTTGGTTATCCTGAATGGCAACCAGACGT
TGCACCAGGTCAACGACAAATTCTGGAAGGTAAACAAACCTATGGAAATG
TATTACTCGTGGAAGAAAACCGCAAGCTTTCTAGACCAT
BO07220.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:07:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sce-RA | 1308 | CG5595-PA | 1..1305 | 17..1321 | 6525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:07:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sce-RA | 1542 | CG5595-RA | 115..1419 | 17..1321 | 6525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:07:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27680651..27681915 | 1281..17 | 6325 | 100 | Minus |
| 3R | 32079331 | 3R | 27680554..27680597 | 1321..1278 | 220 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 16:07:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| F-element | 4708 | F-element F 4708bp | 4291..4331 | 622..664 | 111 | 76.7 | Plus |
BO07220.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:46 Download gff for
BO07220.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sce-RA | 1..1308 | 17..1325 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:40:03 Download gff for
BO07220.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sce-RA | 104..1420 | 11..1328 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:52:42 Download gff for
BO07220.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sce-RA | 115..1419 | 17..1323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:46 Download gff for
BO07220.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sce-RA | 104..1420 | 11..1328 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:11:37 Download gff for
BO07220.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sce-RA | 115..1419 | 17..1323 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:11:37 Download gff for
BO07220.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27680552..27680595 | 1280..1323 | 95 | <- | Minus |
| 3R | 27680653..27681915 | 17..1279 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:52:42 Download gff for
BO07220.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23506274..23506317 | 1280..1323 | 95 | <- | Minus |
| arm_3R | 23506375..23507637 | 17..1279 | 100 | | Minus |
BO07220.pep Sequence
Translation from 16 to 1339
> BO07220.pep
MTSLDPAPNKTWELSLYELQRKPQEVITDSTEIAVSPRSLHSELMCPICL
DMLKKTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRADPN
FDLLISKIYPSREEYEAIQEKVMAKFNQTQSQQALVNSINEGIKLQSQNR
PQRFRTKGGGGGGGGGGNGNGAANVAAPPAPGAPTAVGRNASNQMHVHDT
ASNDSNSNTNSIDRENRDPGHSGTSAASAITSASNAAPSSSANSGASTSA
TRMQVDDASNPPSVRSTPSPVPSNSSSSKPKRAMSVLTSERSEESESDSQ
MDCRTEGDSNIDTEGEGNGELGINDEIELVFKPHPTEMSADNQLIRALKE
NCVRYIKTTANATVDHLSKYLAMRLTLDLGADLPEACRVLNFCIYVAPQP
QQLVILNGNQTLHQVNDKFWKVNKPMEMYYSWKKTASFLDH
BO07220.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:44:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sce-PA | 435 | CG5595-PA | 1..435 | 1..435 | 2263 | 100 | Plus |
