Clone BO07221 Report

Search the DGRC for BO07221

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:72
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptRpS13-RA
Protein status:BO07221.pep: validated full length
Sequenced Size:487

Clone Sequence Records

BO07221.5prime Sequence

485 bp (484 high quality bases) assembled on 2005-12-04

> BO07221.5prime
GAAGTTATCAGTCGACATGGGTCGTATGCACGCTCCTGGCAAGGGTATTT
CCCAATCAGCCCTCCCCTACAGACGCACTGTCCCATCCTGGCTGAAACTG
AACGCAGATGATGTCAAGGAGCAGATTAAGAAGCTGGGCAAGAAGGGTCT
GACTCCCTCCAAAATCGGCATCATCCTGCGTGACTCGCACGGAGTTGCCC
AGGTGCGTTTCGTCAACGGAAACAAGATCCTGCGCATCATGAAGTCGGTG
GGTCTGAAGCCCGACATTCCCGAGGATCTGTACCACATGATCAAGAAGGC
CGTCGCCATCCGCAAGCACTTGGAGCGCAACCGCAAGGACAAGGACGGCA
AGTTCCGTCTGATTCTGGTCGAGTCCAGGATCCACCGCCTGGCCCGCTAC
TACAAGACCAAGAGCGTCCTGCCCCCCAACTGGAAATACGAGTCGAGCAC
TGCCTCCGCCCTGGTTGCCGCAAGCTTTCTAGACC

BO07221.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG13389-PA 456 RpS13-RA 1..453 17..469 2265 100 Plus
CG13389-PB 456 RpS13-RB 1..453 17..469 2265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:20:02
Subject Length Description Subject Range Query Range Score Percent Strand
RpS13-RC 899 CG13389-RC 100..552 17..469 2265 100 Plus
RpS13-RB 611 CG13389-RB 34..486 17..469 2265 100 Plus
RpS13-RA 633 CG13389-RA 47..499 17..469 2265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:19:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8363824..8364126 469..167 1515 100 Minus
2L 23513712 2L 8364187..8364316 168..39 650 100 Minus
Blast to na_te.dros performed on 2015-02-13 16:20:00 has no hits.

BO07221.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:45 Download gff for BO07221.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS13-PA 1..456 17..473 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:57 Download gff for BO07221.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13389-PB 1..456 17..473 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:10:50 Download gff for BO07221.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS13-RA 42..510 12..483 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:37:23 Download gff for BO07221.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS13-RA 42..510 12..483 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:37:23 Download gff for BO07221.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8363813..8364125 168..483 98 <- Minus
2L 8364188..8364315 40..167 100 <- Minus
2L 8364541..8364568 12..39 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:10:50 Download gff for BO07221.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8363813..8364125 168..483 98 <- Minus
arm_2L 8364188..8364315 40..167 100 <- Minus
arm_2L 8364541..8364568 12..39 92   Minus

BO07221.3prime Sequence

485 bp (484 high quality bases) assembled on 2005-12-04

> BO07221.3prime
ATGGTCTAGAAAGCTTGCGGCAACCAGGGCGGAGGCAGTGCTCGACTCGT
ATTTCCAGTTGGGGGGCAGGACGCTCTTGGTCTTGTAGTAGCGGGCCAGG
CGGTGGATCCTGGACTCGACCAGAATCAGACGGAACTTGCCGTCCTTGTC
CTTGCGGTTGCGCTCCAAGTGCTTGCGGATGGCGACGGCCTTCTTGATCA
TGTGGTACAGATCCTCGGGAATGTCGGGCTTCAGACCCACCGACTTCATG
ATGCGCAGGATCTTGTTTCCGTTGACGAAACGCACCTGGGCAACTCCGTG
CGAGTCACGCAGGATGATGCCGATTTTGGAGGGAGTCAGACCCTTCTTGC
CCAGCTTCTTAATCTGCTCCTTGACATCATCTGCGTTCAGTTTCAGCCAG
GATGGGACAGTGCGTCTGTAGGGGAGGGCTGATTGGGAAATACCCTTGCC
AGGAGCGTGCATACGACCCATGTCGACTGATAACT

BO07221.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG13389-PA 456 RpS13-RA 1..453 471..19 2265 100 Minus
CG13389-PB 456 RpS13-RB 1..453 471..19 2265 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:04:39
Subject Length Description Subject Range Query Range Score Percent Strand
RpS13-RC 899 CG13389-RC 100..552 471..19 2265 100 Minus
RpS13-RB 611 CG13389-RB 34..486 471..19 2265 100 Minus
RpS13-RA 633 CG13389-RA 47..499 471..19 2265 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:04:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8363824..8364126 19..321 1515 100 Plus
2L 23513712 2L 8364187..8364316 320..449 650 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:04:35 has no hits.

BO07221.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:44 Download gff for BO07221.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS13-PA 1..456 15..471 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:55 Download gff for BO07221.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13389-PB 1..456 15..471 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:44:55 Download gff for BO07221.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS13-RA 42..510 5..476 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:06:43 Download gff for BO07221.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS13-RA 42..510 5..476 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:06:43 Download gff for BO07221.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8364188..8364315 321..448 100 <- Plus
2L 8364541..8364568 449..476 92   Plus
2L 8363813..8364125 5..320 98 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:44:55 Download gff for BO07221.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8363813..8364125 5..320 98 <- Plus
arm_2L 8364188..8364315 321..448 100 <- Plus
arm_2L 8364541..8364568 449..476 92   Plus

BO07221.complete Sequence

487 bp (487 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630711

> BO07221.complete
GAAGTTATCAGTCGACATGGGTCGTATGCACGCTCCTGGCAAGGGTATTT
CCCAATCAGCCCTCCCCTACAGACGCACTGTCCCATCCTGGCTGAAACTG
AACGCAGATGATGTCAAGGAGCAGATTAAGAAGCTGGGCAAGAAGGGTCT
GACTCCCTCCAAAATCGGCATCATCCTGCGTGACTCGCACGGAGTTGCCC
AGGTGCGTTTCGTCAACGGAAACAAGATCCTGCGCATCATGAAGTCGGTG
GGTCTGAAGCCCGACATTCCCGAGGATCTGTACCACATGATCAAGAAGGC
CGTCGCCATCCGCAAGCACTTGGAGCGCAACCGCAAGGACAAGGACGGCA
AGTTCCGTCTGATTCTGGTCGAGTCCAGGATCCACCGCCTGGCCCGCTAC
TACAAGACCAAGAGCGTCCTGCCCCCCAACTGGAAATACGAGTCGAGCAC
TGCCTCCGCCCTGGTTGCCGCAAGCTTTCTAGACCAT

BO07221.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:08:34
Subject Length Description Subject Range Query Range Score Percent Strand
RpS13-RC 456 CG13389-PC 1..453 17..469 2265 100 Plus
RpS13-RB 456 CG13389-PB 1..453 17..469 2265 100 Plus
RpS13-RA 456 CG13389-PA 1..453 17..469 2265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:08:35
Subject Length Description Subject Range Query Range Score Percent Strand
RpS13-RC 899 CG13389-RC 100..552 17..469 2265 100 Plus
RpS13-RB 611 CG13389-RB 34..486 17..469 2265 100 Plus
RpS13-RA 633 CG13389-RA 47..499 17..469 2265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:08:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8363824..8364126 469..167 1515 100 Minus
2L 23513712 2L 8364187..8364316 168..39 650 100 Minus
Blast to na_te.dros performed on 2014-11-27 11:08:33 has no hits.

BO07221.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:54 Download gff for BO07221.complete
Subject Subject Range Query Range Percent Splice Strand
RpS13-RB 1..456 17..473 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:00:36 Download gff for BO07221.complete
Subject Subject Range Query Range Percent Splice Strand
RpS13-RA 42..510 12..483 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:12 Download gff for BO07221.complete
Subject Subject Range Query Range Percent Splice Strand
RpS13-RA 47..499 17..471 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:54 Download gff for BO07221.complete
Subject Subject Range Query Range Percent Splice Strand
RpS13-RA 42..510 12..483 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:41 Download gff for BO07221.complete
Subject Subject Range Query Range Percent Splice Strand
RpS13-RA 47..499 17..471 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:41 Download gff for BO07221.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8363822..8364125 168..471 99 <- Minus
2L 8364188..8364315 40..167 100 <- Minus
2L 8364541..8364563 17..39 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:12 Download gff for BO07221.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8363822..8364125 168..471 99 <- Minus
arm_2L 8364188..8364315 40..167 100 <- Minus
arm_2L 8364541..8364563 17..39 100   Minus

BO07221.pep Sequence

Translation from 16 to 487

> BO07221.pep
MGRMHAPGKGISQSALPYRRTVPSWLKLNADDVKEQIKKLGKKGLTPSKI
GIILRDSHGVAQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKKAVAIRK
HLERNRKDKDGKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALV
AASFLDH

BO07221.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
RpS13-PC 151 CG13389-PC 1..151 1..151 774 100 Plus
RpS13-PB 151 CG13389-PB 1..151 1..151 774 100 Plus
RpS13-PA 151 CG13389-PA 1..151 1..151 774 100 Plus