Clone Sequence Records
BO07221.5prime Sequence
485 bp (484 high quality bases) assembled on 2005-12-04
> BO07221.5prime
GAAGTTATCAGTCGACATGGGTCGTATGCACGCTCCTGGCAAGGGTATTT
CCCAATCAGCCCTCCCCTACAGACGCACTGTCCCATCCTGGCTGAAACTG
AACGCAGATGATGTCAAGGAGCAGATTAAGAAGCTGGGCAAGAAGGGTCT
GACTCCCTCCAAAATCGGCATCATCCTGCGTGACTCGCACGGAGTTGCCC
AGGTGCGTTTCGTCAACGGAAACAAGATCCTGCGCATCATGAAGTCGGTG
GGTCTGAAGCCCGACATTCCCGAGGATCTGTACCACATGATCAAGAAGGC
CGTCGCCATCCGCAAGCACTTGGAGCGCAACCGCAAGGACAAGGACGGCA
AGTTCCGTCTGATTCTGGTCGAGTCCAGGATCCACCGCCTGGCCCGCTAC
TACAAGACCAAGAGCGTCCTGCCCCCCAACTGGAAATACGAGTCGAGCAC
TGCCTCCGCCCTGGTTGCCGCAAGCTTTCTAGACC
BO07221.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13389-PA | 456 | RpS13-RA | 1..453 | 17..469 | 2265 | 100 | Plus |
CG13389-PB | 456 | RpS13-RB | 1..453 | 17..469 | 2265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:20:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS13-RC | 899 | CG13389-RC | 100..552 | 17..469 | 2265 | 100 | Plus |
RpS13-RB | 611 | CG13389-RB | 34..486 | 17..469 | 2265 | 100 | Plus |
RpS13-RA | 633 | CG13389-RA | 47..499 | 17..469 | 2265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:19:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8363824..8364126 | 469..167 | 1515 | 100 | Minus |
2L | 23513712 | 2L | 8364187..8364316 | 168..39 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:20:00 has no hits.
BO07221.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:45 Download gff for
BO07221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS13-PA | 1..456 | 17..473 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:57 Download gff for
BO07221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13389-PB | 1..456 | 17..473 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:10:50 Download gff for
BO07221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS13-RA | 42..510 | 12..483 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:37:23 Download gff for
BO07221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS13-RA | 42..510 | 12..483 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:37:23 Download gff for
BO07221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8363813..8364125 | 168..483 | 98 | <- | Minus |
2L | 8364188..8364315 | 40..167 | 100 | <- | Minus |
2L | 8364541..8364568 | 12..39 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:10:50 Download gff for
BO07221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8363813..8364125 | 168..483 | 98 | <- | Minus |
arm_2L | 8364188..8364315 | 40..167 | 100 | <- | Minus |
arm_2L | 8364541..8364568 | 12..39 | 92 | | Minus |
BO07221.3prime Sequence
485 bp (484 high quality bases) assembled on 2005-12-04
> BO07221.3prime
ATGGTCTAGAAAGCTTGCGGCAACCAGGGCGGAGGCAGTGCTCGACTCGT
ATTTCCAGTTGGGGGGCAGGACGCTCTTGGTCTTGTAGTAGCGGGCCAGG
CGGTGGATCCTGGACTCGACCAGAATCAGACGGAACTTGCCGTCCTTGTC
CTTGCGGTTGCGCTCCAAGTGCTTGCGGATGGCGACGGCCTTCTTGATCA
TGTGGTACAGATCCTCGGGAATGTCGGGCTTCAGACCCACCGACTTCATG
ATGCGCAGGATCTTGTTTCCGTTGACGAAACGCACCTGGGCAACTCCGTG
CGAGTCACGCAGGATGATGCCGATTTTGGAGGGAGTCAGACCCTTCTTGC
CCAGCTTCTTAATCTGCTCCTTGACATCATCTGCGTTCAGTTTCAGCCAG
GATGGGACAGTGCGTCTGTAGGGGAGGGCTGATTGGGAAATACCCTTGCC
AGGAGCGTGCATACGACCCATGTCGACTGATAACT
BO07221.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13389-PA | 456 | RpS13-RA | 1..453 | 471..19 | 2265 | 100 | Minus |
CG13389-PB | 456 | RpS13-RB | 1..453 | 471..19 | 2265 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:04:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS13-RC | 899 | CG13389-RC | 100..552 | 471..19 | 2265 | 100 | Minus |
RpS13-RB | 611 | CG13389-RB | 34..486 | 471..19 | 2265 | 100 | Minus |
RpS13-RA | 633 | CG13389-RA | 47..499 | 471..19 | 2265 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:04:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8363824..8364126 | 19..321 | 1515 | 100 | Plus |
2L | 23513712 | 2L | 8364187..8364316 | 320..449 | 650 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:04:35 has no hits.
BO07221.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:44 Download gff for
BO07221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS13-PA | 1..456 | 15..471 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:55 Download gff for
BO07221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13389-PB | 1..456 | 15..471 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:44:55 Download gff for
BO07221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS13-RA | 42..510 | 5..476 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:06:43 Download gff for
BO07221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS13-RA | 42..510 | 5..476 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:06:43 Download gff for
BO07221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8364188..8364315 | 321..448 | 100 | <- | Plus |
2L | 8364541..8364568 | 449..476 | 92 | | Plus |
2L | 8363813..8364125 | 5..320 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:44:55 Download gff for
BO07221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8363813..8364125 | 5..320 | 98 | <- | Plus |
arm_2L | 8364188..8364315 | 321..448 | 100 | <- | Plus |
arm_2L | 8364541..8364568 | 449..476 | 92 | | Plus |
BO07221.complete Sequence
487 bp (487 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630711
> BO07221.complete
GAAGTTATCAGTCGACATGGGTCGTATGCACGCTCCTGGCAAGGGTATTT
CCCAATCAGCCCTCCCCTACAGACGCACTGTCCCATCCTGGCTGAAACTG
AACGCAGATGATGTCAAGGAGCAGATTAAGAAGCTGGGCAAGAAGGGTCT
GACTCCCTCCAAAATCGGCATCATCCTGCGTGACTCGCACGGAGTTGCCC
AGGTGCGTTTCGTCAACGGAAACAAGATCCTGCGCATCATGAAGTCGGTG
GGTCTGAAGCCCGACATTCCCGAGGATCTGTACCACATGATCAAGAAGGC
CGTCGCCATCCGCAAGCACTTGGAGCGCAACCGCAAGGACAAGGACGGCA
AGTTCCGTCTGATTCTGGTCGAGTCCAGGATCCACCGCCTGGCCCGCTAC
TACAAGACCAAGAGCGTCCTGCCCCCCAACTGGAAATACGAGTCGAGCAC
TGCCTCCGCCCTGGTTGCCGCAAGCTTTCTAGACCAT
BO07221.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:08:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS13-RC | 456 | CG13389-PC | 1..453 | 17..469 | 2265 | 100 | Plus |
RpS13-RB | 456 | CG13389-PB | 1..453 | 17..469 | 2265 | 100 | Plus |
RpS13-RA | 456 | CG13389-PA | 1..453 | 17..469 | 2265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:08:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS13-RC | 899 | CG13389-RC | 100..552 | 17..469 | 2265 | 100 | Plus |
RpS13-RB | 611 | CG13389-RB | 34..486 | 17..469 | 2265 | 100 | Plus |
RpS13-RA | 633 | CG13389-RA | 47..499 | 17..469 | 2265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:08:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8363824..8364126 | 469..167 | 1515 | 100 | Minus |
2L | 23513712 | 2L | 8364187..8364316 | 168..39 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 11:08:33 has no hits.
BO07221.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:40:54 Download gff for
BO07221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS13-RB | 1..456 | 17..473 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:00:36 Download gff for
BO07221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS13-RA | 42..510 | 12..483 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:12 Download gff for
BO07221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS13-RA | 47..499 | 17..471 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:40:54 Download gff for
BO07221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS13-RA | 42..510 | 12..483 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:41 Download gff for
BO07221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS13-RA | 47..499 | 17..471 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:41 Download gff for
BO07221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8363822..8364125 | 168..471 | 99 | <- | Minus |
2L | 8364188..8364315 | 40..167 | 100 | <- | Minus |
2L | 8364541..8364563 | 17..39 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:12 Download gff for
BO07221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8363822..8364125 | 168..471 | 99 | <- | Minus |
arm_2L | 8364188..8364315 | 40..167 | 100 | <- | Minus |
arm_2L | 8364541..8364563 | 17..39 | 100 | | Minus |
BO07221.pep Sequence
Translation from 16 to 487
> BO07221.pep
MGRMHAPGKGISQSALPYRRTVPSWLKLNADDVKEQIKKLGKKGLTPSKI
GIILRDSHGVAQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKKAVAIRK
HLERNRKDKDGKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALV
AASFLDH
BO07221.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS13-PC | 151 | CG13389-PC | 1..151 | 1..151 | 774 | 100 | Plus |
RpS13-PB | 151 | CG13389-PB | 1..151 | 1..151 | 774 | 100 | Plus |
RpS13-PA | 151 | CG13389-PA | 1..151 | 1..151 | 774 | 100 | Plus |