Clone Sequence Records
BO07226.3prime Sequence
897 bp (753 high quality bases) assembled on 2005-12-04
> BO07226.3prime
ATGGTCTAGAAAGCTTGCGAATCTATTCTTTGGCACCTGAACGTGGGGCA
TGAAGTCGTAGGTGATGATCTTGGGGCCCAGGAAGCCGCCGTAGCCGTTG
CGGCCCTTGTAGTAAATGCCAATGCCGGCTAGTGGTACTGGTGGATTCGA
GACCACGTCCTGGATGTCCATAAACGGCACTGTGCTCTGGGCGGCATCCT
TGTCCAGTCCAGTGTTAGTGAAGTCGATGTACTGATTGTGGCGCGACAGA
GGTATCGAGTGTGCTATTGTCCGCGTAGACACGTCGGCGTTGCTCAGACG
CAGTTTCTCCCTGCGTGCGCCGCTGACATCGGTATTGTCGTTGGACTTCC
AATAGCTATTGTACTCCGGCCGGATGAGCTGACCCGTCCGGAAATCAAAC
TCACTGTAGTAGGCCTCCAAATTCAGATGTGTGCCCACCACACGGAATCG
CACGCCGGTAACGACAAAGGAATTGTCATCCGTATCCACATCGTCCAGAT
CGATGGTGCGTTTCTCGTAGCTCAACTTATGATAATCAACGCCATTCTTC
ACATGACGATCAAAGACGTTGTACTTTTCCACGGGTTTCCATTCCAGAGT
GCTTTGATTGACAATACCACGAGGCAGGAGTTCGCCCTCCTGGATTTGCA
GATGGAAAATGCGATTTTGCTTTACAAAACGCAAACCAGTCACGACTCGG
TTGCGCTTGACATCGGCGATCGTGTCCCGCAGATTGAAGAAACGATCAGA
CTTCAGACCCTCCTCGTCGCACAGGCAGAAGCAGTAGCTGCAGTGCCAGA
GAAGGTAACGCCACCAGCTGTCCACCTTGGTGGTGCCCCTGGTGCACTTA
CCCCGCTGGCCAAGGACGCGTCCGTTTTCGTACTCGATGAACTCATA
BO07226.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2206-PA | 1995 | l(1)G0193-RA | 1114..1992 | 897..19 | 4395 | 100 | Minus |
CG2206-PB | 1941 | l(1)G0193-RB | 1060..1938 | 897..19 | 4395 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:19:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0193-RB | 2559 | CG2206-RB | 1452..2330 | 897..19 | 4395 | 100 | Minus |
l(1)G0193-RA | 2453 | CG2206-RA | 1346..2224 | 897..19 | 4395 | 100 | Minus |
CG31664-RC | 2075 | CG31664-RC | 1623..1811 | 239..51 | 270 | 76.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:19:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7942057..7942445 | 310..698 | 1945 | 100 | Plus |
X | 23542271 | X | 7941707..7942001 | 19..313 | 1475 | 100 | Plus |
X | 23542271 | X | 7942509..7942708 | 698..897 | 1000 | 100 | Plus |
2L | 23513712 | 2L | 1824436..1824624 | 51..239 | 255 | 75.7 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:19:35 has no hits.
BO07226.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:53 Download gff for
BO07226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2206-PB | 1061..1941 | 15..896 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:07 Download gff for
BO07226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2206-PB | 1061..1941 | 15..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:24:29 Download gff for
BO07226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0193-RA | 1347..2230 | 13..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:48:28 Download gff for
BO07226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0193-RA | 1347..2230 | 13..896 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:48:28 Download gff for
BO07226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7941701..7941998 | 13..310 | 99 | <- | Plus |
X | 7942058..7942444 | 311..697 | 100 | <- | Plus |
X | 7942509..7942707 | 698..896 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:24:29 Download gff for
BO07226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7835734..7836031 | 13..310 | 99 | <- | Plus |
arm_X | 7836091..7836477 | 311..697 | 100 | <- | Plus |
arm_X | 7836542..7836740 | 698..896 | 100 | | Plus |
BO07226.5prime Sequence
795 bp (770 high quality bases) assembled on 2005-12-04
> BO07226.5prime
GAAGTTATCAGTCGACATGAGATTTATAAATTGGGTACTTCCCCTGCTTC
TGGCCACGTTGGTCGCCCTGCAACAGCCCACACTAACGGACGCTCTGATC
GAGGATGTCCTGGACATCATACATGTGGTCAAAGAGGTCACCTCCGGCGT
CCTCAAGGCCTGGGACATTGTACAATCCTCCCCGTTGGCGGCCAACATTG
ATTTCCCACTGATGCGCGAGAAACAGAAGAAGGTGTTGCAGCGCCTCAAA
GAAGTCAGCAAGCAAATAGACAATACCGAAGATCAGCACGCTCAATATGT
TGCCTTGGCCATCGAATCGGTGACTAGCTTCATGCACAACAACGCTCCAA
TTATGGCTAAGATGAATGATATCTCGGACACGATCAATAGGATCTCATCG
CGCTATCAGCAGATGCAGAAGTACGAGGCTTACAAGGACAAGTTGGAGAT
GTCCACGCTGATAACGTTTGCGGAGTGGACAGTGTCGCCGAATGCACATT
CGGTGCACCATCTGATGGATCGTCTGCATATCACTCTACTTGGCAACGAG
GATCGATCTTCCAACACAACGTCCACCAATCTACTCCAACAGCTGGCCAC
TGCCTATGAGGTGTCTACCGATCAAATTTGCAATACCATGCAATCGGCCC
AGCAGTTTATATACTCACTATATGCGGATATAGCCCTGACCGAACTGAAA
GCCTACACCATGATGGAATTCTCGTGGATGATGTTGCGGGTCTACGGGAA
GGGCAACTACACCCAGGAGGCGGAAATCATGCGTTCCGAATATGA
BO07226.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2206-PA | 1995 | l(1)G0193-RA | 1..779 | 17..795 | 3895 | 100 | Plus |
CG2206-PB | 1941 | l(1)G0193-RB | 541..725 | 611..795 | 925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:38:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0193-RA | 2453 | CG2206-RA | 233..1011 | 17..795 | 3895 | 100 | Plus |
l(1)G0193-RB | 2559 | CG2206-RB | 933..1117 | 611..795 | 925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:38:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7945894..7946223 | 612..283 | 1650 | 100 | Minus |
X | 23542271 | X | 7946407..7946676 | 286..17 | 1350 | 100 | Minus |
X | 23542271 | X | 7943043..7943229 | 795..609 | 935 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:38:55 has no hits.
BO07226.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:54 Download gff for
BO07226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2206-PA | 1..778 | 17..794 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:08 Download gff for
BO07226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2206-PA | 1..778 | 17..794 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:31:50 Download gff for
BO07226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0193-RA | 229..1010 | 9..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:17:30 Download gff for
BO07226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0193-RA | 229..1010 | 9..794 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:17:30 Download gff for
BO07226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7945896..7946219 | 287..610 | 100 | <- | Minus |
X | 7943044..7943227 | 611..794 | 100 | <- | Minus |
X | 7946407..7946680 | 9..286 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:31:50 Download gff for
BO07226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7837077..7837260 | 611..794 | 100 | <- | Minus |
arm_X | 7839929..7840252 | 287..610 | 100 | <- | Minus |
arm_X | 7840440..7840713 | 9..286 | 98 | | Minus |
BO07226.complete Sequence
2026 bp assembled on 2008-08-14
GenBank Submission: FJ630712
> BO07226.complete
GAAGTTATCAGTCGACATGAGATTTATAAATTGGGTACTTCCCCTGCTTC
TGGCCACGTTGGTCGCCCTGCAACAGCCCACACTAACGGACGCTCTGATC
GAGGATGTCCTGGACATCATACATGTGGTCAAAGAGGTCACCTCCGGCGT
CCTCAAGGCCTGGGACATTGTACAATCCTCCCCGTTGGCGGCCAACATTG
ATTTCCCACTGATGCGCGAGAAACAGAAGAAGGTGTTGCAGCGCCTCAAA
GAAGTCAGCAAGCAAATAGACAATACCGAAGATCAGCACGCTCAATATGT
TGCCTTGGCCATCGAATCGGTGACTAGCTTCATGCACAACAACGCTCCAA
TTATGGCTAAGATGAATGATATCTCGGACACGATCAATAGGATCTCATCG
CGCTATCAGCAGATGCAGAAGTACGAGGCTTACAAGGACAAGTTGGAGAT
GTCCACGCTGATAACGTTTGCGGAGTGGACAGTGTCGCCGAATGCACATT
CGGTGCACCATCTGATGGATCGTCTGCATATCACTCTACTTGGCAACGAG
GATCGATCTTCCAACACAACGTCCACCAATCTACTCCAACAGCTGGCCAC
TGCCTATGAGGTGTCTACCGATCAAATTTGCAATACCATGCAATCGGCCC
AGCAGTTTATATACTCACTATATGCGGATATAGCCCTGACCGAACTGAAA
GCCTACACCATGATGGAATTCTCGTGGATGATGTTGCGGGTCTACGGGAA
GGGCAACTACACCCAGGAGGCGGAAATCATGCGTTCCGAATATGAGAAGA
GGACGGAACGCACACTAAAAATACTCAAGGATGTGATGCTACGAGCTGAT
CGTATCGTTTACCGCTGTGATCCGACGAAACATGTACGGGGAGTCACCTA
TGACGAGGTCACGCGCCTCCTTCAAGGCTACATTGAAAACGAGGTGGATT
TGAATAAAGAGGAAACTTGCCGAGAGACGTGTGACTTTTATCAGTCCACC
CGCAGTGAAGGCTGCTTTAAGGATCTCTACTGTTCCCGTCAGCCGAAATG
TAGTGGTCGTCTGTACAACTGCAGGTTCGTAGACTCCGACATGTGGGTGT
GCCCGTCGCCACAGAATAGCACGCGGCGCTATGAGTTCATCGAGTACGAA
AACGGACGCGTCCTTGGCCAGCGGGGTAAGTGCACCAGGGGCACCACCAA
GGTGGACAGCTGGTGGCGTTACCTTCTCTGGCACTGCAGCTACTGCTTCT
GCCTGTGCGACGAGGAGGGTCTGAAGTCTGATCGTTTCTTCAATCTGCGG
GACACGATCGCCGATGTCAAGCGCAACCGAGTCGTGACTGGTTTGCGTTT
TGTAAAGCAAAATCGCATTTTCCATCTGCAAATCCAGGAGGGCGAACTCC
TGCCTCGTGGTATTGTCAATCAAAGCACTCTGGAATGGAAACCCGTGGAA
AAGTACAACGTCTTTGATCGTCATGTGAAGAATGGCGTTGATTATCATAA
GTTGAGCTACGAGAAACGCACCATCGATCTGGACGATGTGGATACGGATG
ACAATTCCTTTGTCGTTACCGGCGTGCGATTCCGTGTGGTGGGCACACAT
CTGAATTTGGAGGCCTACTACAGTGAGTTTGATTTCCGGACGGGTCAGCT
CATCCGGCCGGAGTACAATAGCTATTGGAAGTCCAACGACAATACCGATG
TCAGCGGCGCACGCAGGGAGAAACTGCGTCTGAGCAACGCCGACGTGTCT
ACGCGGACAATAGCACACTCGATACCTCTGTCGCGCCACAATCAGTACAT
CGACTTCACTAACACTGGACTGGACAAGGATGCCGCCCAGAGCACAGTGC
CGTTTATGGACATCCAGGACGTGGTCTCGAATCCACCAGTACCACTAGCC
GGCATTGGCATTTACTACAAGGGCCGCAACGGCTACGGCGGCTTCCTGGG
CCCCAAGATCATCACCTACGACTTCATGCCCCACGTTCAGGTGCCAAAGA
ATAGATTCGCAAGCTTTCTAGACCAT
BO07226.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:53:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0193-RA | 1995 | CG2206-PA | 1..1992 | 17..2008 | 9960 | 100 | Plus |
l(1)G0193-RB | 1941 | CG2206-PB | 541..1938 | 611..2008 | 6990 | 100 | Plus |
CG31664-RC | 1590 | CG31664-PC | 1370..1558 | 1788..1976 | 255 | 75.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0193-RA | 2453 | CG2206-RA | 233..2224 | 17..2008 | 9960 | 100 | Plus |
l(1)G0193-RB | 2559 | CG2206-RB | 933..2330 | 611..2008 | 6990 | 100 | Plus |
CG31664-RC | 2075 | CG31664-RC | 1623..1811 | 1788..1976 | 255 | 75.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7942509..7943229 | 1329..609 | 3605 | 100 | Minus |
X | 23542271 | X | 7942057..7942445 | 1717..1329 | 1945 | 100 | Minus |
X | 23542271 | X | 7945894..7946223 | 612..283 | 1650 | 100 | Minus |
X | 23542271 | X | 7941707..7942001 | 2008..1714 | 1475 | 100 | Minus |
X | 23542271 | X | 7946407..7946676 | 286..17 | 1350 | 100 | Minus |
2L | 23513712 | 2L | 1824436..1824624 | 1976..1788 | 255 | 75.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:53:50 has no hits.
BO07226.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:43:04 Download gff for
BO07226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0193-RA | 327..2328 | 9..2014 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:37 Download gff for
BO07226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0193-RA | 233..2224 | 17..2010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:41 Download gff for
BO07226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0193-RA | 331..2322 | 17..2010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:09 Download gff for
BO07226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0193-RA | 233..2224 | 17..2010 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:09 Download gff for
BO07226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7941705..7941998 | 1717..2010 | 99 | <- | Minus |
X | 7942058..7942444 | 1330..1716 | 100 | <- | Minus |
X | 7942509..7943227 | 611..1329 | 100 | <- | Minus |
X | 7945896..7946219 | 287..610 | 100 | <- | Minus |
X | 7946407..7946676 | 17..286 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:37 Download gff for
BO07226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7835738..7836031 | 1717..2010 | 99 | <- | Minus |
arm_X | 7836091..7836477 | 1330..1716 | 100 | <- | Minus |
arm_X | 7836542..7837260 | 611..1329 | 100 | <- | Minus |
arm_X | 7839929..7840252 | 287..610 | 100 | <- | Minus |
arm_X | 7840440..7840709 | 17..286 | 100 | | Minus |
BO07226.pep Sequence
Translation from 16 to 2026
> BO07226.pep
MRFINWVLPLLLATLVALQQPTLTDALIEDVLDIIHVVKEVTSGVLKAWD
IVQSSPLAANIDFPLMREKQKKVLQRLKEVSKQIDNTEDQHAQYVALAIE
SVTSFMHNNAPIMAKMNDISDTINRISSRYQQMQKYEAYKDKLEMSTLIT
FAEWTVSPNAHSVHHLMDRLHITLLGNEDRSSNTTSTNLLQQLATAYEVS
TDQICNTMQSAQQFIYSLYADIALTELKAYTMMEFSWMMLRVYGKGNYTQ
EAEIMRSEYEKRTERTLKILKDVMLRADRIVYRCDPTKHVRGVTYDEVTR
LLQGYIENEVDLNKEETCRETCDFYQSTRSEGCFKDLYCSRQPKCSGRLY
NCRFVDSDMWVCPSPQNSTRRYEFIEYENGRVLGQRGKCTRGTTKVDSWW
RYLLWHCSYCFCLCDEEGLKSDRFFNLRDTIADVKRNRVVTGLRFVKQNR
IFHLQIQEGELLPRGIVNQSTLEWKPVEKYNVFDRHVKNGVDYHKLSYEK
RTIDLDDVDTDDNSFVVTGVRFRVVGTHLNLEAYYSEFDFRTGQLIRPEY
NSYWKSNDNTDVSGARREKLRLSNADVSTRTIAHSIPLSRHNQYIDFTNT
GLDKDAAQSTVPFMDIQDVVSNPPVPLAGIGIYYKGRNGYGGFLGPKIIT
YDFMPHVQVPKNRFASFLDH
BO07226.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0193-PA | 664 | CG2206-PA | 1..664 | 1..664 | 3511 | 100 | Plus |
l(1)G0193-PB | 646 | CG2206-PB | 98..646 | 129..664 | 2524 | 88.4 | Plus |
CG31664-PC | 529 | CG31664-PC | 4..526 | 122..660 | 1402 | 50.5 | Plus |
CG31664-PB | 528 | CG31664-PB | 4..525 | 122..660 | 1396 | 50.1 | Plus |
CG30409-PB | 98 | CG30409-PB | 29..96 | 293..358 | 156 | 39.7 | Plus |