Clone BO07226 Report

Search the DGRC for BO07226

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:72
Well:26
Vector:pDNR-Dual
Associated Gene/Transcriptl(1)G0193-RA
Protein status:BO07226.pep: Imported from assembly
Sequenced Size:2026

Clone Sequence Records

BO07226.3prime Sequence

897 bp (753 high quality bases) assembled on 2005-12-04

> BO07226.3prime
ATGGTCTAGAAAGCTTGCGAATCTATTCTTTGGCACCTGAACGTGGGGCA
TGAAGTCGTAGGTGATGATCTTGGGGCCCAGGAAGCCGCCGTAGCCGTTG
CGGCCCTTGTAGTAAATGCCAATGCCGGCTAGTGGTACTGGTGGATTCGA
GACCACGTCCTGGATGTCCATAAACGGCACTGTGCTCTGGGCGGCATCCT
TGTCCAGTCCAGTGTTAGTGAAGTCGATGTACTGATTGTGGCGCGACAGA
GGTATCGAGTGTGCTATTGTCCGCGTAGACACGTCGGCGTTGCTCAGACG
CAGTTTCTCCCTGCGTGCGCCGCTGACATCGGTATTGTCGTTGGACTTCC
AATAGCTATTGTACTCCGGCCGGATGAGCTGACCCGTCCGGAAATCAAAC
TCACTGTAGTAGGCCTCCAAATTCAGATGTGTGCCCACCACACGGAATCG
CACGCCGGTAACGACAAAGGAATTGTCATCCGTATCCACATCGTCCAGAT
CGATGGTGCGTTTCTCGTAGCTCAACTTATGATAATCAACGCCATTCTTC
ACATGACGATCAAAGACGTTGTACTTTTCCACGGGTTTCCATTCCAGAGT
GCTTTGATTGACAATACCACGAGGCAGGAGTTCGCCCTCCTGGATTTGCA
GATGGAAAATGCGATTTTGCTTTACAAAACGCAAACCAGTCACGACTCGG
TTGCGCTTGACATCGGCGATCGTGTCCCGCAGATTGAAGAAACGATCAGA
CTTCAGACCCTCCTCGTCGCACAGGCAGAAGCAGTAGCTGCAGTGCCAGA
GAAGGTAACGCCACCAGCTGTCCACCTTGGTGGTGCCCCTGGTGCACTTA
CCCCGCTGGCCAAGGACGCGTCCGTTTTCGTACTCGATGAACTCATA

BO07226.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG2206-PA 1995 l(1)G0193-RA 1114..1992 897..19 4395 100 Minus
CG2206-PB 1941 l(1)G0193-RB 1060..1938 897..19 4395 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:19:38
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0193-RB 2559 CG2206-RB 1452..2330 897..19 4395 100 Minus
l(1)G0193-RA 2453 CG2206-RA 1346..2224 897..19 4395 100 Minus
CG31664-RC 2075 CG31664-RC 1623..1811 239..51 270 76.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:19:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7942057..7942445 310..698 1945 100 Plus
X 23542271 X 7941707..7942001 19..313 1475 100 Plus
X 23542271 X 7942509..7942708 698..897 1000 100 Plus
2L 23513712 2L 1824436..1824624 51..239 255 75.7 Plus
Blast to na_te.dros performed on 2015-02-04 20:19:35 has no hits.

BO07226.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:53 Download gff for BO07226.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2206-PB 1061..1941 15..896 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:07 Download gff for BO07226.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2206-PB 1061..1941 15..896 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:24:29 Download gff for BO07226.3prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0193-RA 1347..2230 13..896 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:48:28 Download gff for BO07226.3prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0193-RA 1347..2230 13..896 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:48:28 Download gff for BO07226.3prime
Subject Subject Range Query Range Percent Splice Strand
X 7941701..7941998 13..310 99 <- Plus
X 7942058..7942444 311..697 100 <- Plus
X 7942509..7942707 698..896 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:24:29 Download gff for BO07226.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7835734..7836031 13..310 99 <- Plus
arm_X 7836091..7836477 311..697 100 <- Plus
arm_X 7836542..7836740 698..896 100   Plus

BO07226.5prime Sequence

795 bp (770 high quality bases) assembled on 2005-12-04

> BO07226.5prime
GAAGTTATCAGTCGACATGAGATTTATAAATTGGGTACTTCCCCTGCTTC
TGGCCACGTTGGTCGCCCTGCAACAGCCCACACTAACGGACGCTCTGATC
GAGGATGTCCTGGACATCATACATGTGGTCAAAGAGGTCACCTCCGGCGT
CCTCAAGGCCTGGGACATTGTACAATCCTCCCCGTTGGCGGCCAACATTG
ATTTCCCACTGATGCGCGAGAAACAGAAGAAGGTGTTGCAGCGCCTCAAA
GAAGTCAGCAAGCAAATAGACAATACCGAAGATCAGCACGCTCAATATGT
TGCCTTGGCCATCGAATCGGTGACTAGCTTCATGCACAACAACGCTCCAA
TTATGGCTAAGATGAATGATATCTCGGACACGATCAATAGGATCTCATCG
CGCTATCAGCAGATGCAGAAGTACGAGGCTTACAAGGACAAGTTGGAGAT
GTCCACGCTGATAACGTTTGCGGAGTGGACAGTGTCGCCGAATGCACATT
CGGTGCACCATCTGATGGATCGTCTGCATATCACTCTACTTGGCAACGAG
GATCGATCTTCCAACACAACGTCCACCAATCTACTCCAACAGCTGGCCAC
TGCCTATGAGGTGTCTACCGATCAAATTTGCAATACCATGCAATCGGCCC
AGCAGTTTATATACTCACTATATGCGGATATAGCCCTGACCGAACTGAAA
GCCTACACCATGATGGAATTCTCGTGGATGATGTTGCGGGTCTACGGGAA
GGGCAACTACACCCAGGAGGCGGAAATCATGCGTTCCGAATATGA

BO07226.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG2206-PA 1995 l(1)G0193-RA 1..779 17..795 3895 100 Plus
CG2206-PB 1941 l(1)G0193-RB 541..725 611..795 925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:38:58
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0193-RA 2453 CG2206-RA 233..1011 17..795 3895 100 Plus
l(1)G0193-RB 2559 CG2206-RB 933..1117 611..795 925 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7945894..7946223 612..283 1650 100 Minus
X 23542271 X 7946407..7946676 286..17 1350 100 Minus
X 23542271 X 7943043..7943229 795..609 935 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:38:55 has no hits.

BO07226.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:54 Download gff for BO07226.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2206-PA 1..778 17..794 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:08 Download gff for BO07226.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2206-PA 1..778 17..794 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:31:50 Download gff for BO07226.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0193-RA 229..1010 9..794 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:17:30 Download gff for BO07226.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0193-RA 229..1010 9..794 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:17:30 Download gff for BO07226.5prime
Subject Subject Range Query Range Percent Splice Strand
X 7945896..7946219 287..610 100 <- Minus
X 7943044..7943227 611..794 100 <- Minus
X 7946407..7946680 9..286 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:31:50 Download gff for BO07226.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7837077..7837260 611..794 100 <- Minus
arm_X 7839929..7840252 287..610 100 <- Minus
arm_X 7840440..7840713 9..286 98   Minus

BO07226.complete Sequence

2026 bp assembled on 2008-08-14

GenBank Submission: FJ630712

> BO07226.complete
GAAGTTATCAGTCGACATGAGATTTATAAATTGGGTACTTCCCCTGCTTC
TGGCCACGTTGGTCGCCCTGCAACAGCCCACACTAACGGACGCTCTGATC
GAGGATGTCCTGGACATCATACATGTGGTCAAAGAGGTCACCTCCGGCGT
CCTCAAGGCCTGGGACATTGTACAATCCTCCCCGTTGGCGGCCAACATTG
ATTTCCCACTGATGCGCGAGAAACAGAAGAAGGTGTTGCAGCGCCTCAAA
GAAGTCAGCAAGCAAATAGACAATACCGAAGATCAGCACGCTCAATATGT
TGCCTTGGCCATCGAATCGGTGACTAGCTTCATGCACAACAACGCTCCAA
TTATGGCTAAGATGAATGATATCTCGGACACGATCAATAGGATCTCATCG
CGCTATCAGCAGATGCAGAAGTACGAGGCTTACAAGGACAAGTTGGAGAT
GTCCACGCTGATAACGTTTGCGGAGTGGACAGTGTCGCCGAATGCACATT
CGGTGCACCATCTGATGGATCGTCTGCATATCACTCTACTTGGCAACGAG
GATCGATCTTCCAACACAACGTCCACCAATCTACTCCAACAGCTGGCCAC
TGCCTATGAGGTGTCTACCGATCAAATTTGCAATACCATGCAATCGGCCC
AGCAGTTTATATACTCACTATATGCGGATATAGCCCTGACCGAACTGAAA
GCCTACACCATGATGGAATTCTCGTGGATGATGTTGCGGGTCTACGGGAA
GGGCAACTACACCCAGGAGGCGGAAATCATGCGTTCCGAATATGAGAAGA
GGACGGAACGCACACTAAAAATACTCAAGGATGTGATGCTACGAGCTGAT
CGTATCGTTTACCGCTGTGATCCGACGAAACATGTACGGGGAGTCACCTA
TGACGAGGTCACGCGCCTCCTTCAAGGCTACATTGAAAACGAGGTGGATT
TGAATAAAGAGGAAACTTGCCGAGAGACGTGTGACTTTTATCAGTCCACC
CGCAGTGAAGGCTGCTTTAAGGATCTCTACTGTTCCCGTCAGCCGAAATG
TAGTGGTCGTCTGTACAACTGCAGGTTCGTAGACTCCGACATGTGGGTGT
GCCCGTCGCCACAGAATAGCACGCGGCGCTATGAGTTCATCGAGTACGAA
AACGGACGCGTCCTTGGCCAGCGGGGTAAGTGCACCAGGGGCACCACCAA
GGTGGACAGCTGGTGGCGTTACCTTCTCTGGCACTGCAGCTACTGCTTCT
GCCTGTGCGACGAGGAGGGTCTGAAGTCTGATCGTTTCTTCAATCTGCGG
GACACGATCGCCGATGTCAAGCGCAACCGAGTCGTGACTGGTTTGCGTTT
TGTAAAGCAAAATCGCATTTTCCATCTGCAAATCCAGGAGGGCGAACTCC
TGCCTCGTGGTATTGTCAATCAAAGCACTCTGGAATGGAAACCCGTGGAA
AAGTACAACGTCTTTGATCGTCATGTGAAGAATGGCGTTGATTATCATAA
GTTGAGCTACGAGAAACGCACCATCGATCTGGACGATGTGGATACGGATG
ACAATTCCTTTGTCGTTACCGGCGTGCGATTCCGTGTGGTGGGCACACAT
CTGAATTTGGAGGCCTACTACAGTGAGTTTGATTTCCGGACGGGTCAGCT
CATCCGGCCGGAGTACAATAGCTATTGGAAGTCCAACGACAATACCGATG
TCAGCGGCGCACGCAGGGAGAAACTGCGTCTGAGCAACGCCGACGTGTCT
ACGCGGACAATAGCACACTCGATACCTCTGTCGCGCCACAATCAGTACAT
CGACTTCACTAACACTGGACTGGACAAGGATGCCGCCCAGAGCACAGTGC
CGTTTATGGACATCCAGGACGTGGTCTCGAATCCACCAGTACCACTAGCC
GGCATTGGCATTTACTACAAGGGCCGCAACGGCTACGGCGGCTTCCTGGG
CCCCAAGATCATCACCTACGACTTCATGCCCCACGTTCAGGTGCCAAAGA
ATAGATTCGCAAGCTTTCTAGACCAT

BO07226.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0193-RA 1995 CG2206-PA 1..1992 17..2008 9960 100 Plus
l(1)G0193-RB 1941 CG2206-PB 541..1938 611..2008 6990 100 Plus
CG31664-RC 1590 CG31664-PC 1370..1558 1788..1976 255 75.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:51
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0193-RA 2453 CG2206-RA 233..2224 17..2008 9960 100 Plus
l(1)G0193-RB 2559 CG2206-RB 933..2330 611..2008 6990 100 Plus
CG31664-RC 2075 CG31664-RC 1623..1811 1788..1976 255 75.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7942509..7943229 1329..609 3605 100 Minus
X 23542271 X 7942057..7942445 1717..1329 1945 100 Minus
X 23542271 X 7945894..7946223 612..283 1650 100 Minus
X 23542271 X 7941707..7942001 2008..1714 1475 100 Minus
X 23542271 X 7946407..7946676 286..17 1350 100 Minus
2L 23513712 2L 1824436..1824624 1976..1788 255 75.7 Minus
Blast to na_te.dros performed on 2014-11-27 14:53:50 has no hits.

BO07226.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:43:04 Download gff for BO07226.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0193-RA 327..2328 9..2014 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:37 Download gff for BO07226.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0193-RA 233..2224 17..2010 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:41 Download gff for BO07226.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0193-RA 331..2322 17..2010 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:09 Download gff for BO07226.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0193-RA 233..2224 17..2010 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:09 Download gff for BO07226.complete
Subject Subject Range Query Range Percent Splice Strand
X 7941705..7941998 1717..2010 99 <- Minus
X 7942058..7942444 1330..1716 100 <- Minus
X 7942509..7943227 611..1329 100 <- Minus
X 7945896..7946219 287..610 100 <- Minus
X 7946407..7946676 17..286 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:37 Download gff for BO07226.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7835738..7836031 1717..2010 99 <- Minus
arm_X 7836091..7836477 1330..1716 100 <- Minus
arm_X 7836542..7837260 611..1329 100 <- Minus
arm_X 7839929..7840252 287..610 100 <- Minus
arm_X 7840440..7840709 17..286 100   Minus

BO07226.pep Sequence

Translation from 16 to 2026

> BO07226.pep
MRFINWVLPLLLATLVALQQPTLTDALIEDVLDIIHVVKEVTSGVLKAWD
IVQSSPLAANIDFPLMREKQKKVLQRLKEVSKQIDNTEDQHAQYVALAIE
SVTSFMHNNAPIMAKMNDISDTINRISSRYQQMQKYEAYKDKLEMSTLIT
FAEWTVSPNAHSVHHLMDRLHITLLGNEDRSSNTTSTNLLQQLATAYEVS
TDQICNTMQSAQQFIYSLYADIALTELKAYTMMEFSWMMLRVYGKGNYTQ
EAEIMRSEYEKRTERTLKILKDVMLRADRIVYRCDPTKHVRGVTYDEVTR
LLQGYIENEVDLNKEETCRETCDFYQSTRSEGCFKDLYCSRQPKCSGRLY
NCRFVDSDMWVCPSPQNSTRRYEFIEYENGRVLGQRGKCTRGTTKVDSWW
RYLLWHCSYCFCLCDEEGLKSDRFFNLRDTIADVKRNRVVTGLRFVKQNR
IFHLQIQEGELLPRGIVNQSTLEWKPVEKYNVFDRHVKNGVDYHKLSYEK
RTIDLDDVDTDDNSFVVTGVRFRVVGTHLNLEAYYSEFDFRTGQLIRPEY
NSYWKSNDNTDVSGARREKLRLSNADVSTRTIAHSIPLSRHNQYIDFTNT
GLDKDAAQSTVPFMDIQDVVSNPPVPLAGIGIYYKGRNGYGGFLGPKIIT
YDFMPHVQVPKNRFASFLDH

BO07226.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0193-PA 664 CG2206-PA 1..664 1..664 3511 100 Plus
l(1)G0193-PB 646 CG2206-PB 98..646 129..664 2524 88.4 Plus
CG31664-PC 529 CG31664-PC 4..526 122..660 1402 50.5 Plus
CG31664-PB 528 CG31664-PB 4..525 122..660 1396 50.1 Plus
CG30409-PB 98 CG30409-PB 29..96 293..358 156 39.7 Plus