Clone Sequence Records
BO07228.3prime Sequence
927 bp (855 high quality bases) assembled on 2005-12-04
> BO07228.3prime
ATGGTCTAGAAAGCTTGCATTCAAGGAGGGCATATGGCCGTCGTGCCAGT
TTATTTCGATATTTGGCCACTTGGTCTGCAGGCAGGTGACCATCGGGTTC
GAGGTGCAGACCGACTTCAGATCGCCTTCCAGCAAAATGGCCGTGCCGCA
ATAGTAGCGCACCTTGTTGTTCTCATTGGAGCCCGGTATGCCGTTGTAGT
GCATCAGCTCGAACGTATCCGGCGTGGAGCGGCTCTCCAGCGGGAAGAAC
TCGTCCATGAACGCATTTAGCAGTATAATGCCCAAGTTCTCCGGATCAAG
ACGCTTCTGCATGAGGGCGACATAGGCCGGCTCGCTGACCAGATTCAAGG
CGATGAGAACTTCGCGCAGCATTGTGGTCGATATGAAATTGTTGCCCTCC
GGGTCGTACGATTTGAAGATCCGACGACCAGTTTCCGAGGGCGTCTCTGG
TGAGACAAGCCTCTTTTCGTTGCTGAACAGAACGGTTAAATGCGTATCGG
ACCCCATCACCCATACGGGATAGCGTGGGTTCTTGAAGAAGGAGCCCACC
GTGCAGTAACGCATTTCCTCCATCAGTGTTATAAAGCCGATGTCGCTCTG
CTCACAGATGCCACGCAGCTTCAGTCCGCCAACGTCCTGCTCATTATCCC
AGACATGGGCAACTGCTCGCCCAGTTAGCATCAGGTTAATAAGCGACTGG
CCGCCATAGCCGTATGTGCTGTGTATCAGGGGCTCCGACGTGTCCGATAT
ATCGGCCGCAACCAGCTCCAAGCCCTTGGTGAGGAACACCGAGTACATGA
ACAGCAGCACGCCGTATGTGTGCGCCAGCTGGTCGTAATTCTCCATATAG
TAGCGGGCCACGGCTGCGATATTCTTAAAGTGGAGCGTGTGCAGGCGCTC
GTGGAACTCATCCGGCGACAGTTCCTG
BO07228.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7332-PA | 1683 | CG7332-RA | 772..1680 | 927..19 | 4545 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:26:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7332-RB | 3401 | CG7332-RB | 1076..1984 | 927..19 | 4545 | 100 | Minus |
| CG7332-RA | 2146 | CG7332-RA | 1076..1984 | 927..19 | 4545 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:26:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18886299..18886743 | 927..483 | 2225 | 100 | Minus |
| X | 23542271 | X | 18887053..18887215 | 322..160 | 815 | 100 | Minus |
| X | 23542271 | X | 18886835..18886995 | 483..323 | 805 | 100 | Minus |
| X | 23542271 | X | 18887298..18887443 | 164..19 | 730 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:26:51 has no hits.
BO07228.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:55 Download gff for
BO07228.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7332-PA | 772..1683 | 16..927 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:09 Download gff for
BO07228.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7332-PA | 772..1683 | 16..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:05:34 Download gff for
BO07228.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7332-RA | 1076..1990 | 13..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:34:03 Download gff for
BO07228.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7332-RA | 1076..1990 | 13..927 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:34:03 Download gff for
BO07228.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18886299..18886743 | 483..927 | 100 | -> | Minus |
| X | 18886836..18886995 | 323..482 | 100 | -> | Minus |
| X | 18887053..18887212 | 163..322 | 100 | -> | Minus |
| X | 18887300..18887449 | 13..162 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:05:34 Download gff for
BO07228.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18780332..18780776 | 483..927 | 100 | -> | Minus |
| arm_X | 18780869..18781028 | 323..482 | 100 | -> | Minus |
| arm_X | 18781086..18781245 | 163..322 | 100 | -> | Minus |
| arm_X | 18781333..18781482 | 13..162 | 98 | | Minus |
BO07228.5prime Sequence
931 bp (838 high quality bases) assembled on 2005-12-04
> BO07228.5prime
GAAGTTATCAGTCGACATGAACGAGAAAATCGTGCGGGAGCAGCGCGGCG
GCGAAGATTCCCCATCCTCCGTCTCGGCGAAAAGTGCAACGGCAGCGGCG
TCAGCGTCGACAGCGTCGATGACGTTTGCCTCGGCGGCCTTGGAATCGCA
CAAGACGACCACCATCACGACCGCCAGCAGCAGCCCTCGCACCAGTGGAG
CAAGTGCATCCGCCTCGTCATCCTCTCGATCCGCATCTGCACCTGCATCG
TCGTCCAGCCAGCAGGAAAAGCAACCGATGCTGAATGCCACCGATATGCG
CGAACTGCGCGAAATCAAGCAGTTGCTGTGGGGCGACAATGTGCGCGAAG
ATGTATTCAAGCGTTGGTCTCAAGGATTCGAGTTTAGTAAAGTGGAACCG
TCTGCATTGGTGCAGAAGCAGGGCGGTCCTTGTGCTGTGATAGCGCCGGT
GCAGGCGTACTTGCTTAAGATTATTATCATGGACTTGCCAGGCATCAAGC
TCTCGGAGATTTCCCTCGACAAATCGCAGAACCTGCTGATCCAGGCATTG
TGTGACATCCTGAAGAATTGTCGGGCGCCGCGGTACCGCATCGTCCATCT
CTTGCGCCGACGAGGAAACGCTACAGAGGCTGGATCAACCAAAAAGCGCT
CACCGGCTGGCGAGGAAGAATCTGCTTTAGCTGGCCAAGCGGCAGGATCT
TCCGAAGAGGTGGAGGAGGCGGCAGAAGCCACTCCCGCCTCGGTCAGCAA
GTTGTCCCAGGCCCTGCAGCTCGAACACGATATGCACCAGGAACTGTCGC
CGGATGAGTTCCACGAGCGCCTGCACACGCTCCACTTTAAGAATATCGCA
GCCGTGGCCCGCTACTATATGGAGAATTACGACCAGCTGGCGCACACATA
CGGCGTGCTGCTGTTCATGTACTCGGTGGTT
BO07228.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7332-PA | 1683 | CG7332-RA | 1..912 | 17..928 | 4560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:57:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7332-RB | 3401 | CG7332-RB | 305..1216 | 17..928 | 4560 | 100 | Plus |
| CG7332-RA | 2146 | CG7332-RA | 305..1216 | 17..928 | 4560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:57:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18886018..18886439 | 507..928 | 2110 | 100 | Plus |
| X | 23542271 | X | 18884817..18885175 | 17..375 | 1795 | 100 | Plus |
| X | 23542271 | X | 18885827..18885962 | 373..508 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 09:57:06 has no hits.
BO07228.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:56 Download gff for
BO07228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7332-PA | 1..914 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:11 Download gff for
BO07228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7332-PA | 1..914 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:44:09 Download gff for
BO07228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7332-RA | 294..1218 | 5..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:56:01 Download gff for
BO07228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7332-RA | 294..1218 | 5..931 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:56:01 Download gff for
BO07228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18884806..18885174 | 5..374 | 98 | -> | Plus |
| X | 18885829..18885962 | 375..508 | 100 | -> | Plus |
| X | 18886020..18886441 | 509..931 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:44:09 Download gff for
BO07228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18778839..18779207 | 5..374 | 98 | -> | Plus |
| arm_X | 18779862..18779995 | 375..508 | 100 | -> | Plus |
| arm_X | 18780053..18780474 | 509..931 | 99 | | Plus |
BO07228.complete Sequence
1714 bp (1714 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630713
> BO07228.complete
GAAGTTATCAGTCGACATGAACGAGAAAATCGTGCGGGAGCAGCGCGGCG
GCGAAGATTCCCCATCCTCCGTCTCGGCGAAAAGTGCAACGGCAGCGGCG
TCAGCGTCGACAGCGTCGATGACGTTTGCCTCGGCGGCCTTGGAATCGCA
CAAGACGACCACCATCACGACCGCCAGCAGCAGCCCTCGCACCAGTGGAG
CAAGTGCATCCGCCTCGTCATCCTCTCGATCCGCATCTGCACCTGCATCG
TCGTCCAGCCAGCAGGAAAAGCAACCGATGCTGAATGCCACCGATATGCG
CGAACTGCGCGAAATCAAGCAGTTGCTGTGGGGCGACAATGTGCGCGAAG
ATGTATTCAAGCGTTGGTCTCAAGGATTCGAGTTTAGTAAAGTGGAACCG
TCTGCATTGGTGCAGAAGCAGGGCGGTCCTTGTGCTGTGATAGCGCCGGT
GCAGGCGTACTTGCTTAAGATTATTATCATGGACTTGCCAGGCATCAAGC
TCTCGGAGATTTCCCTCGACAAATCGCAGAACCTGCTGATCCAGGCATTG
TGTGACATCCTGAAGAATTGTCGGGCGCCGCGGTACCGCATCGTCCATCT
CTTGCGCCGACGAGGAAACGCTACAGAGGCTGGATCAACCAAAAAGCGCT
CACCGGCTGGCGAGGAAGAATCTGCTTTAGCTGGCCAAGCGGCAGGATCT
TCCGAAGAGGTGGAGGAGGCGGCAGAAGCCACTCCCGCCTCGGTCAGCAA
GTTGTCCCAGGCCCTGCAGCTCGAACACGATATGCACCAGGAACTGTCGC
CGGATGAGTTCCACGAGCGCCTGCACACGCTCCACTTTAAGAATATCGCA
GCCGTGGCCCGCTACTATATGGAGAATTACGACCAGCTGGCGCACACATA
CGGCGTGCTGCTGTTCATGTACTCGGTGTTCCTCACCAAGGGCTTGGAGC
TGGTTGCGGCCGATATATCGGACACGTCGGAGCCCCTGATACACAGCACA
TACGGCTATGGCGGCCAGTCGCTTATTAACCTGATGCTAACTGGGCGAGC
AGTTGCCCATGTCTGGGATAATGAGCAGGACGTTGGCGGACTGAAGCTGC
GTGGCATCTGTGAGCAGAGCGACATCGGCTTTATAACACTGATGGAGGAA
ATGCGTTACTGCACGGTGGGCTCCTTCTTCAAGAACCCACGCTATCCCGT
ATGGGTGATGGGGTCCGATACGCATTTAACCGTTCTGTTCAGCAACGAAA
AGAGGCTTGTCTCACCAGAGACGCCCTCGGAAACTGGTCGTCGGATCTTC
AAATCGTACGACCCGGAGGGCAACAATTTCATATCGACCACAATGCTGCG
CGAAGTTCTCATCGCCTTGAATCTGGTCAGCGAGCCGGCCTATGTCGCCC
TCATGCAGAAGCGTCTTGATCCGGAGAACTTGGGCATTATACTGCTAAAT
GCGTTCATGGACGAGTTCTTCCCGCTGGAGAGCCGCTCCACGCCGGATAC
GTTCGAGCTGATGCACTACAACGGCATACCGGGCTCCAATGAGAACAACA
AGGTGCGCTACTATTGCGGCACGGCCATTTTGCTGGAAGGCGATCTGAAG
TCGGTCTGCACCTCGAACCCGATGGTCACCTGCCTGCAGACCAAGTGGCC
AAATATCGAAATAAACTGGCACGACGGCCATATGCCCTCCTTGAATGCAA
GCTTTCTAGACCAT
BO07228.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:47:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7332-RB | 1683 | CG7332-PB | 1..1680 | 17..1696 | 8400 | 100 | Plus |
| CG7332-RA | 1683 | CG7332-PA | 1..1680 | 17..1696 | 8400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:47:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7332-RB | 3401 | CG7332-RB | 305..1984 | 17..1696 | 8400 | 100 | Plus |
| CG7332-RA | 2146 | CG7332-RA | 305..1984 | 17..1696 | 8400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:47:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18886018..18886743 | 507..1232 | 3630 | 100 | Plus |
| X | 23542271 | X | 18884817..18885175 | 17..375 | 1795 | 100 | Plus |
| X | 23542271 | X | 18887053..18887215 | 1393..1555 | 815 | 100 | Plus |
| X | 23542271 | X | 18886835..18886995 | 1232..1392 | 805 | 100 | Plus |
| X | 23542271 | X | 18887298..18887443 | 1551..1696 | 730 | 100 | Plus |
| X | 23542271 | X | 18885827..18885962 | 373..508 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:47:23 has no hits.
BO07228.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:34 Download gff for
BO07228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7332-RA | 1..1683 | 17..1699 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:47 Download gff for
BO07228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7332-RA | 305..2001 | 5..1702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:16 Download gff for
BO07228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7332-RA | 305..1984 | 17..1698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:34 Download gff for
BO07228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7332-RA | 305..2001 | 5..1702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:58 Download gff for
BO07228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7332-RA | 305..1984 | 17..1698 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:58 Download gff for
BO07228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18887053..18887212 | 1393..1552 | 100 | -> | Plus |
| X | 18887300..18887443 | 1553..1698 | 98 | | Plus |
| X | 18884817..18885174 | 17..374 | 100 | -> | Plus |
| X | 18885829..18885962 | 375..508 | 100 | -> | Plus |
| X | 18886020..18886743 | 509..1232 | 100 | -> | Plus |
| X | 18886836..18886995 | 1233..1392 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:16 Download gff for
BO07228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18778850..18779207 | 17..374 | 100 | -> | Plus |
| arm_X | 18779862..18779995 | 375..508 | 100 | -> | Plus |
| arm_X | 18780053..18780776 | 509..1232 | 100 | -> | Plus |
| arm_X | 18781333..18781476 | 1553..1698 | 98 | | Plus |
| arm_X | 18780869..18781028 | 1233..1392 | 100 | -> | Plus |
| arm_X | 18781086..18781245 | 1393..1552 | 100 | -> | Plus |
BO07228.pep Sequence
Translation from 16 to 1714
> BO07228.pep
MNEKIVREQRGGEDSPSSVSAKSATAAASASTASMTFASAALESHKTTTI
TTASSSPRTSGASASASSSSRSASAPASSSSQQEKQPMLNATDMRELREI
KQLLWGDNVREDVFKRWSQGFEFSKVEPSALVQKQGGPCAVIAPVQAYLL
KIIIMDLPGIKLSEISLDKSQNLLIQALCDILKNCRAPRYRIVHLLRRRG
NATEAGSTKKRSPAGEEESALAGQAAGSSEEVEEAAEATPASVSKLSQAL
QLEHDMHQELSPDEFHERLHTLHFKNIAAVARYYMENYDQLAHTYGVLLF
MYSVFLTKGLELVAADISDTSEPLIHSTYGYGGQSLINLMLTGRAVAHVW
DNEQDVGGLKLRGICEQSDIGFITLMEEMRYCTVGSFFKNPRYPVWVMGS
DTHLTVLFSNEKRLVSPETPSETGRRIFKSYDPEGNNFISTTMLREVLIA
LNLVSEPAYVALMQKRLDPENLGIILLNAFMDEFFPLESRSTPDTFELMH
YNGIPGSNENNKVRYYCGTAILLEGDLKSVCTSNPMVTCLQTKWPNIEIN
WHDGHMPSLNASFLDH
BO07228.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7332-PB | 560 | CG7332-PB | 1..560 | 1..560 | 2869 | 100 | Plus |
| CG7332-PA | 560 | CG7332-PA | 1..560 | 1..560 | 2869 | 100 | Plus |
