Clone Sequence Records
BO07229.3prime Sequence
900 bp (826 high quality bases) assembled on 2005-12-04
> BO07229.3prime
ATGGTCTAGAAAGCTTGCACTCTCGTCATCGCTGCCGGCAGCCTGTCGCA
CCTTGGGACCTCCGGCGCGCTTGGCCATGATGATCTGGTCCACCTTCAAG
ATGGTTGCGGCCGCGCCAACAGCGTACTTGAGACCCCAGAACTTGGACTG
GTACAGATCGAAGAGCTTTGCCTTCGTTGTGTCGATGGTGCTGGCCTTCT
CGGCCTCAATGTCGAAGCCGATTGTCTTTCCGGCCTCGTTGTTGTGGGCC
AAATACAACTGGTTGACGATTTCCGTGCCATTGATGCCGGAGTTCTCGGC
CAGAGCCTTGGGGAAAACTTCCAGCGCATTAGCGAACTTGCGCACGGCGT
ACTGGTCCAGACCAGGCAGAGTATCAGCATAGGCGGACAGCTGGGTGGCC
AACTCGATCTCGGTGGCGCCAGCTCCGGGCAGATAGCGGCCATCCCGGGT
CAGGCACTTGAAGTTGTTAATAGCGTCATCCAGGGCACGCTCAATGTCAT
CCATGAAGTTGTCGGTAGCTCCACGGATCACCACGGTGGCAATGCGCGAG
TCCTTGCCCTCGTTCCTGAAGGCCACAATTGTGGTGTCTCCCAGTTCCTC
GATGCAAACTTTGTCGCAGTAGCCCAACTCCTCCTGACTGGGCGTGGTGA
TGCGCGGCAGGACAGTGGCGTTTACGGATCGGCTCAGGCGACGCAGGTCG
AACTTAGAGTTGAGACGCACGGCCATCAGACCGTATTTGTTAAGGAAGTG
CAGAGCCATGTCGCCAACCTTGCCGCCGGCCACAACCACCTTGACACCTG
CGTCGGCGATAGCCTTGATCTGGCTCTCCACAGGCTCTCTTCGCCGGAGG
AAAGCTCAATAGCTCGTCGGCCGACTTGATCAGCACTGTGCCCTTGGTCT
BO07229.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8258-PA | 1641 | CG8258-RA | 827..1638 | 830..19 | 4060 | 100 | Minus |
CG8258-PA | 1641 | CG8258-RA | 755..804 | 900..851 | 250 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:10:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8258-RA | 1904 | CG8258-RA | 833..1716 | 900..19 | 4370 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:10:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8905032..8905581 | 19..568 | 2750 | 100 | Plus |
2R | 25286936 | 2R | 8905642..8905979 | 565..900 | 1590 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 05:10:26 has no hits.
BO07229.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:57 Download gff for
BO07229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8258-PA | 755..1641 | 15..900 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:13 Download gff for
BO07229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8258-PA | 755..1641 | 15..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:21:28 Download gff for
BO07229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8258-RA | 833..1725 | 8..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:36:02 Download gff for
BO07229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8258-RA | 833..1725 | 8..900 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:36:02 Download gff for
BO07229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8905023..8905578 | 8..565 | 99 | <- | Plus |
2R | 8905643..8905979 | 566..900 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:21:28 Download gff for
BO07229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4792528..4793083 | 8..565 | 99 | <- | Plus |
arm_2R | 4793148..4793484 | 566..900 | 99 | | Plus |
BO07229.5prime Sequence
871 bp (830 high quality bases) assembled on 2005-12-04
> BO07229.5prime
GAAGTTATCAGTCGACATGGCTTTATCCGTTCCCAAGGCTCCCGGTGTGT
CGCAGATGCTGAAGGATGGCGCCCGGATGTACAGTGGGCTGGAGGAGGCG
GTGTTCCGCAACATCAGCGCCTGCAAGGAGTTTGCACAGACCATGCGCTC
TGCCTATGGGCCAAATGGCATGAACAAGATGATCATCAATCACATCGAGA
AGCAGTTCGTGACCAGCGATGCCGGCACCATCATGCGGGAGCTGGATGTT
GAGCATCCAGCCGCCAAGTTGATCGTCATGGCCAGCCAGATGCAGGATGC
CGAGGTGGGCGATGGTACAAACTTCGTGGTGGTGCTGGCCGGAGCTCTGT
TGGAGTCCGCTGAGGAGCTGCTGCGTCTAGGAATCACCACTGCCGAGATC
TCCGACGGCTATGAAAAGGCCTTGGAGAAGGCTCTGGAGATTCTGCCCAA
TCTGGTGAGCCACAAGATCGAGGACTATCGCAATGTGGAGAAGGTCAAGG
AGGTACTCCGCACATCGATCATGTCGAAGCAGTACGGCCAGGAGGACTTC
CTCAACGATTTGGTGAGCAAGGCCTGCGTCTCCATCTTGCCGGATGAGGG
CACCTTCAACGTGGACAACATTCGCATCTGTAAGATCTTGGGCAGCGGAC
TGACCAAGTCTGAGGTGGTTCGCGGCATGGTCTTCAAGCGCTTCGTAGAA
GGCGATGTGACCTATGCAGAGAAGGCCAAGATCGTGATTTTCTCCTGCCC
CGTCGATATTATCCAAACTGAGACCAAGGGCACAGTGCTGATCAAGTCGG
CCGACGAGCTATTGAGCTTTTCCTCCGGCGAAGAGAGCCTGTTGGAGAGC
CAGATCAAGGCTATCGCCGAC
BO07229.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8258-PA | 1641 | CG8258-RA | 1..855 | 17..871 | 4275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:28:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8258-RA | 1904 | CG8258-RA | 79..933 | 17..871 | 4275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:28:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8905879..8906674 | 871..76 | 3980 | 100 | Minus |
2R | 25286936 | 2R | 8906853..8906912 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:28:05 has no hits.
BO07229.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:57 Download gff for
BO07229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8258-PA | 1..855 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:14 Download gff for
BO07229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8258-PA | 1..855 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:02:50 Download gff for
BO07229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8258-RA | 79..933 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:00:03 Download gff for
BO07229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8258-RA | 79..933 | 17..871 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:00:03 Download gff for
BO07229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8905879..8906673 | 77..871 | 100 | <- | Minus |
2R | 8906853..8906912 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:02:50 Download gff for
BO07229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4793384..4794178 | 77..871 | 100 | <- | Minus |
arm_2R | 4794358..4794417 | 17..76 | 100 | | Minus |
BO07229.complete Sequence
1672 bp (1672 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630714
> BO07229.complete
GAAGTTATCAGTCGACATGGCTTTATCCGTTCCCAAGGCTCCCGGTGTGT
CGCAGATGCTGAAGGATGGCGCCCGGATGTACAGTGGGCTGGAGGAGGCG
GTGTTCCGCAACATCAGCGCCTGCAAGGAGTTTGCACAGACCATGCGCTC
TGCCTATGGGCCAAATGGCATGAACAAGATGATCATCAATCACATCGAGA
AGCAGTTCGTGACCAGCGATGCCGGCACCATCATGCGGGAGCTGGATGTT
GAGCATCCAGCCGCCAAGTTGATCGTCATGGCCAGCCAGATGCAGGATGC
CGAGGTGGGCGATGGTACAAACTTCGTGGTGGTGCTGGCCGGAGCTCTGT
TGGAGTCCGCTGAGGAGCTGCTGCGTCTAGGAATCACCACTGCCGAGATC
TCCGACGGCTATGAAAAGGCCTTGGAGAAGGCTCTGGAGATTCTGCCCAA
TCTGGTGAGCCACAAGATCGAGGACTATCGCAATGTGGAGAAGGTCAAGG
AGGTACTCCGCACATCGATCATGTCGAAGCAGTACGGCCAGGAGGACTTC
CTCAACGATTTGGTGAGCAAGGCCTGCGTCTCCATCTTGCCGGATGAGGG
CACCTTCAACGTGGACAACATTCGCATCTGTAAGATCTTGGGCAGCGGAC
TGACCAAGTCTGAGGTGGTTCGCGGCATGGTCTTCAAGCGCTTCGTAGAA
GGCGATGTGACCTATGCAGAGAAGGCCAAGATCGTGATTTTCTCCTGCCC
CGTCGATATTATCCAAACTGAGACCAAGGGCACAGTGCTGATCAAGTCGG
CCGACGAGCTATTGAGCTTTTCCTCCGGCGAAGAGAGCCTGTTGGAGAGC
CAGATCAAGGCTATCGCCGACGCAGGTGTCAAGGTGGTTGTGGCCGGCGG
CAAGGTTGGCGACATGGCTCTGCACTTCCTTAACAAATACGGTCTGATGG
CCGTGCGTCTCAACTCTAAGTTCGACCTGCGTCGCCTGAGCCGATCCGTA
AACGCCACTGTCCTGCCGCGCATCACCACGCCCAGTCAGGAGGAGTTGGG
CTACTGCGACAAAGTTTGCATCGAGGAACTGGGAGACACCACAATTGTGG
CCTTCAGGAACGAGGGCAAGGACTCGCGCATTGCCACCGTGGTGATCCGT
GGAGCTACCGACAACTTCATGGATGACATTGAGCGTGCCCTGGATGACGC
TATTAACAACTTCAAGTGCCTGACCCGGGATGGCCGCTATCTGCCCGGAG
CTGGCGCCACCGAGATCGAGTTGGCCACCCAGCTGTCCGCCTATGCTGAT
ACTCTGCCTGGTCTGGACCAGTACGCCGTGCGCAAGTTCGCTAATGCGCT
GGAAGTTTTCCCCAAGGCTCTGGCCGAGAACTCCGGCATCAATGGCACGG
AAATCGTCAACCAGTTGTATTTGGCCCACAACAACGAGGCCGGAAAGACA
ATCGGCTTCGACATTGAGGCCGAGAAGGCCAGCACCATCGACACAACGAA
GGCAAAGCTCTTCGATCTGTACCAGTCCAAGTTCTGGGGTCTCAAGTACG
CTGTTGGCGCGGCCGCAACCATCTTGAAGGTGGACCAGATCATCATGGCC
AAGCGCGCCGGAGGTCCCAAGGTGCGACAGGCTGCCGGCAGCGATGACGA
GAGTGCAAGCTTTCTAGACCAT
BO07229.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:46:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8258-RA | 1641 | CG8258-PA | 1..1638 | 17..1654 | 8190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8258-RA | 1904 | CG8258-RA | 79..1716 | 17..1654 | 8190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8905642..8906674 | 1108..76 | 5165 | 100 | Minus |
2R | 25286936 | 2R | 8905032..8905581 | 1654..1105 | 2750 | 100 | Minus |
2R | 25286936 | 2R | 8906853..8906912 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:46:36 has no hits.
BO07229.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:35 Download gff for
BO07229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8258-RA | 1..1641 | 17..1658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:49 Download gff for
BO07229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8258-RA | 90..1736 | 17..1665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:33:39 Download gff for
BO07229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8258-RA | 79..1716 | 17..1656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:35 Download gff for
BO07229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8258-RA | 90..1736 | 17..1665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:09:15 Download gff for
BO07229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8258-RA | 79..1716 | 17..1656 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:09:15 Download gff for
BO07229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8905030..8905578 | 1108..1656 | 99 | <- | Minus |
2R | 8905643..8906673 | 77..1107 | 100 | <- | Minus |
2R | 8906853..8906912 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:33:39 Download gff for
BO07229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4792535..4793083 | 1108..1656 | 99 | <- | Minus |
arm_2R | 4793148..4794178 | 77..1107 | 100 | <- | Minus |
arm_2R | 4794358..4794417 | 17..76 | 100 | | Minus |
BO07229.pep Sequence
Translation from 16 to 1672
> BO07229.pep
MALSVPKAPGVSQMLKDGARMYSGLEEAVFRNISACKEFAQTMRSAYGPN
GMNKMIINHIEKQFVTSDAGTIMRELDVEHPAAKLIVMASQMQDAEVGDG
TNFVVVLAGALLESAEELLRLGITTAEISDGYEKALEKALEILPNLVSHK
IEDYRNVEKVKEVLRTSIMSKQYGQEDFLNDLVSKACVSILPDEGTFNVD
NIRICKILGSGLTKSEVVRGMVFKRFVEGDVTYAEKAKIVIFSCPVDIIQ
TETKGTVLIKSADELLSFSSGEESLLESQIKAIADAGVKVVVAGGKVGDM
ALHFLNKYGLMAVRLNSKFDLRRLSRSVNATVLPRITTPSQEELGYCDKV
CIEELGDTTIVAFRNEGKDSRIATVVIRGATDNFMDDIERALDDAINNFK
CLTRDGRYLPGAGATEIELATQLSAYADTLPGLDQYAVRKFANALEVFPK
ALAENSGINGTEIVNQLYLAHNNEAGKTIGFDIEAEKASTIDTTKAKLFD
LYQSKFWGLKYAVGAAATILKVDQIIMAKRAGGPKVRQAAGSDDESASFL
DH
BO07229.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8258-PA | 546 | CG8258-PA | 1..546 | 1..546 | 2729 | 100 | Plus |
T-cp1-PA | 557 | CG5374-PA | 23..534 | 31..526 | 551 | 28.8 | Plus |
T-cp1-PB | 557 | CG5374-PB | 23..534 | 31..526 | 551 | 28.8 | Plus |
CG5525-PA | 533 | CG5525-PA | 3..529 | 6..526 | 545 | 29.5 | Plus |
Tcp-1eta-PA | 544 | CG8351-PA | 7..527 | 14..534 | 541 | 27.4 | Plus |