Clone BO07229 Report

Search the DGRC for BO07229

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:72
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG8258-RA
Protein status:BO07229.pep: validated full length
Sequenced Size:1672

Clone Sequence Records

BO07229.3prime Sequence

900 bp (826 high quality bases) assembled on 2005-12-04

> BO07229.3prime
ATGGTCTAGAAAGCTTGCACTCTCGTCATCGCTGCCGGCAGCCTGTCGCA
CCTTGGGACCTCCGGCGCGCTTGGCCATGATGATCTGGTCCACCTTCAAG
ATGGTTGCGGCCGCGCCAACAGCGTACTTGAGACCCCAGAACTTGGACTG
GTACAGATCGAAGAGCTTTGCCTTCGTTGTGTCGATGGTGCTGGCCTTCT
CGGCCTCAATGTCGAAGCCGATTGTCTTTCCGGCCTCGTTGTTGTGGGCC
AAATACAACTGGTTGACGATTTCCGTGCCATTGATGCCGGAGTTCTCGGC
CAGAGCCTTGGGGAAAACTTCCAGCGCATTAGCGAACTTGCGCACGGCGT
ACTGGTCCAGACCAGGCAGAGTATCAGCATAGGCGGACAGCTGGGTGGCC
AACTCGATCTCGGTGGCGCCAGCTCCGGGCAGATAGCGGCCATCCCGGGT
CAGGCACTTGAAGTTGTTAATAGCGTCATCCAGGGCACGCTCAATGTCAT
CCATGAAGTTGTCGGTAGCTCCACGGATCACCACGGTGGCAATGCGCGAG
TCCTTGCCCTCGTTCCTGAAGGCCACAATTGTGGTGTCTCCCAGTTCCTC
GATGCAAACTTTGTCGCAGTAGCCCAACTCCTCCTGACTGGGCGTGGTGA
TGCGCGGCAGGACAGTGGCGTTTACGGATCGGCTCAGGCGACGCAGGTCG
AACTTAGAGTTGAGACGCACGGCCATCAGACCGTATTTGTTAAGGAAGTG
CAGAGCCATGTCGCCAACCTTGCCGCCGGCCACAACCACCTTGACACCTG
CGTCGGCGATAGCCTTGATCTGGCTCTCCACAGGCTCTCTTCGCCGGAGG
AAAGCTCAATAGCTCGTCGGCCGACTTGATCAGCACTGTGCCCTTGGTCT

BO07229.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG8258-PA 1641 CG8258-RA 827..1638 830..19 4060 100 Minus
CG8258-PA 1641 CG8258-RA 755..804 900..851 250 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:10:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG8258-RA 1904 CG8258-RA 833..1716 900..19 4370 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8905032..8905581 19..568 2750 100 Plus
2R 25286936 2R 8905642..8905979 565..900 1590 99.4 Plus
Blast to na_te.dros performed on 2015-02-11 05:10:26 has no hits.

BO07229.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:57 Download gff for BO07229.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8258-PA 755..1641 15..900 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:13 Download gff for BO07229.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8258-PA 755..1641 15..900 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:21:28 Download gff for BO07229.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8258-RA 833..1725 8..900 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:36:02 Download gff for BO07229.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8258-RA 833..1725 8..900 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:36:02 Download gff for BO07229.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8905023..8905578 8..565 99 <- Plus
2R 8905643..8905979 566..900 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:21:28 Download gff for BO07229.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4792528..4793083 8..565 99 <- Plus
arm_2R 4793148..4793484 566..900 99   Plus

BO07229.5prime Sequence

871 bp (830 high quality bases) assembled on 2005-12-04

> BO07229.5prime
GAAGTTATCAGTCGACATGGCTTTATCCGTTCCCAAGGCTCCCGGTGTGT
CGCAGATGCTGAAGGATGGCGCCCGGATGTACAGTGGGCTGGAGGAGGCG
GTGTTCCGCAACATCAGCGCCTGCAAGGAGTTTGCACAGACCATGCGCTC
TGCCTATGGGCCAAATGGCATGAACAAGATGATCATCAATCACATCGAGA
AGCAGTTCGTGACCAGCGATGCCGGCACCATCATGCGGGAGCTGGATGTT
GAGCATCCAGCCGCCAAGTTGATCGTCATGGCCAGCCAGATGCAGGATGC
CGAGGTGGGCGATGGTACAAACTTCGTGGTGGTGCTGGCCGGAGCTCTGT
TGGAGTCCGCTGAGGAGCTGCTGCGTCTAGGAATCACCACTGCCGAGATC
TCCGACGGCTATGAAAAGGCCTTGGAGAAGGCTCTGGAGATTCTGCCCAA
TCTGGTGAGCCACAAGATCGAGGACTATCGCAATGTGGAGAAGGTCAAGG
AGGTACTCCGCACATCGATCATGTCGAAGCAGTACGGCCAGGAGGACTTC
CTCAACGATTTGGTGAGCAAGGCCTGCGTCTCCATCTTGCCGGATGAGGG
CACCTTCAACGTGGACAACATTCGCATCTGTAAGATCTTGGGCAGCGGAC
TGACCAAGTCTGAGGTGGTTCGCGGCATGGTCTTCAAGCGCTTCGTAGAA
GGCGATGTGACCTATGCAGAGAAGGCCAAGATCGTGATTTTCTCCTGCCC
CGTCGATATTATCCAAACTGAGACCAAGGGCACAGTGCTGATCAAGTCGG
CCGACGAGCTATTGAGCTTTTCCTCCGGCGAAGAGAGCCTGTTGGAGAGC
CAGATCAAGGCTATCGCCGAC

BO07229.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG8258-PA 1641 CG8258-RA 1..855 17..871 4275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:28:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG8258-RA 1904 CG8258-RA 79..933 17..871 4275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:28:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8905879..8906674 871..76 3980 100 Minus
2R 25286936 2R 8906853..8906912 76..17 300 100 Minus
Blast to na_te.dros performed on 2015-02-13 05:28:05 has no hits.

BO07229.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:12:57 Download gff for BO07229.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8258-PA 1..855 17..871 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:14 Download gff for BO07229.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8258-PA 1..855 17..871 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:02:50 Download gff for BO07229.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8258-RA 79..933 17..871 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:00:03 Download gff for BO07229.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8258-RA 79..933 17..871 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:00:03 Download gff for BO07229.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8905879..8906673 77..871 100 <- Minus
2R 8906853..8906912 17..76 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:02:50 Download gff for BO07229.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4793384..4794178 77..871 100 <- Minus
arm_2R 4794358..4794417 17..76 100   Minus

BO07229.complete Sequence

1672 bp (1672 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630714

> BO07229.complete
GAAGTTATCAGTCGACATGGCTTTATCCGTTCCCAAGGCTCCCGGTGTGT
CGCAGATGCTGAAGGATGGCGCCCGGATGTACAGTGGGCTGGAGGAGGCG
GTGTTCCGCAACATCAGCGCCTGCAAGGAGTTTGCACAGACCATGCGCTC
TGCCTATGGGCCAAATGGCATGAACAAGATGATCATCAATCACATCGAGA
AGCAGTTCGTGACCAGCGATGCCGGCACCATCATGCGGGAGCTGGATGTT
GAGCATCCAGCCGCCAAGTTGATCGTCATGGCCAGCCAGATGCAGGATGC
CGAGGTGGGCGATGGTACAAACTTCGTGGTGGTGCTGGCCGGAGCTCTGT
TGGAGTCCGCTGAGGAGCTGCTGCGTCTAGGAATCACCACTGCCGAGATC
TCCGACGGCTATGAAAAGGCCTTGGAGAAGGCTCTGGAGATTCTGCCCAA
TCTGGTGAGCCACAAGATCGAGGACTATCGCAATGTGGAGAAGGTCAAGG
AGGTACTCCGCACATCGATCATGTCGAAGCAGTACGGCCAGGAGGACTTC
CTCAACGATTTGGTGAGCAAGGCCTGCGTCTCCATCTTGCCGGATGAGGG
CACCTTCAACGTGGACAACATTCGCATCTGTAAGATCTTGGGCAGCGGAC
TGACCAAGTCTGAGGTGGTTCGCGGCATGGTCTTCAAGCGCTTCGTAGAA
GGCGATGTGACCTATGCAGAGAAGGCCAAGATCGTGATTTTCTCCTGCCC
CGTCGATATTATCCAAACTGAGACCAAGGGCACAGTGCTGATCAAGTCGG
CCGACGAGCTATTGAGCTTTTCCTCCGGCGAAGAGAGCCTGTTGGAGAGC
CAGATCAAGGCTATCGCCGACGCAGGTGTCAAGGTGGTTGTGGCCGGCGG
CAAGGTTGGCGACATGGCTCTGCACTTCCTTAACAAATACGGTCTGATGG
CCGTGCGTCTCAACTCTAAGTTCGACCTGCGTCGCCTGAGCCGATCCGTA
AACGCCACTGTCCTGCCGCGCATCACCACGCCCAGTCAGGAGGAGTTGGG
CTACTGCGACAAAGTTTGCATCGAGGAACTGGGAGACACCACAATTGTGG
CCTTCAGGAACGAGGGCAAGGACTCGCGCATTGCCACCGTGGTGATCCGT
GGAGCTACCGACAACTTCATGGATGACATTGAGCGTGCCCTGGATGACGC
TATTAACAACTTCAAGTGCCTGACCCGGGATGGCCGCTATCTGCCCGGAG
CTGGCGCCACCGAGATCGAGTTGGCCACCCAGCTGTCCGCCTATGCTGAT
ACTCTGCCTGGTCTGGACCAGTACGCCGTGCGCAAGTTCGCTAATGCGCT
GGAAGTTTTCCCCAAGGCTCTGGCCGAGAACTCCGGCATCAATGGCACGG
AAATCGTCAACCAGTTGTATTTGGCCCACAACAACGAGGCCGGAAAGACA
ATCGGCTTCGACATTGAGGCCGAGAAGGCCAGCACCATCGACACAACGAA
GGCAAAGCTCTTCGATCTGTACCAGTCCAAGTTCTGGGGTCTCAAGTACG
CTGTTGGCGCGGCCGCAACCATCTTGAAGGTGGACCAGATCATCATGGCC
AAGCGCGCCGGAGGTCCCAAGGTGCGACAGGCTGCCGGCAGCGATGACGA
GAGTGCAAGCTTTCTAGACCAT

BO07229.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8258-RA 1641 CG8258-PA 1..1638 17..1654 8190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG8258-RA 1904 CG8258-RA 79..1716 17..1654 8190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8905642..8906674 1108..76 5165 100 Minus
2R 25286936 2R 8905032..8905581 1654..1105 2750 100 Minus
2R 25286936 2R 8906853..8906912 76..17 300 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:46:36 has no hits.

BO07229.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:35 Download gff for BO07229.complete
Subject Subject Range Query Range Percent Splice Strand
CG8258-RA 1..1641 17..1658 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:49 Download gff for BO07229.complete
Subject Subject Range Query Range Percent Splice Strand
CG8258-RA 90..1736 17..1665 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:33:39 Download gff for BO07229.complete
Subject Subject Range Query Range Percent Splice Strand
CG8258-RA 79..1716 17..1656 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:35 Download gff for BO07229.complete
Subject Subject Range Query Range Percent Splice Strand
CG8258-RA 90..1736 17..1665 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:09:15 Download gff for BO07229.complete
Subject Subject Range Query Range Percent Splice Strand
CG8258-RA 79..1716 17..1656 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:09:15 Download gff for BO07229.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8905030..8905578 1108..1656 99 <- Minus
2R 8905643..8906673 77..1107 100 <- Minus
2R 8906853..8906912 17..76 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:33:39 Download gff for BO07229.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4792535..4793083 1108..1656 99 <- Minus
arm_2R 4793148..4794178 77..1107 100 <- Minus
arm_2R 4794358..4794417 17..76 100   Minus

BO07229.pep Sequence

Translation from 16 to 1672

> BO07229.pep
MALSVPKAPGVSQMLKDGARMYSGLEEAVFRNISACKEFAQTMRSAYGPN
GMNKMIINHIEKQFVTSDAGTIMRELDVEHPAAKLIVMASQMQDAEVGDG
TNFVVVLAGALLESAEELLRLGITTAEISDGYEKALEKALEILPNLVSHK
IEDYRNVEKVKEVLRTSIMSKQYGQEDFLNDLVSKACVSILPDEGTFNVD
NIRICKILGSGLTKSEVVRGMVFKRFVEGDVTYAEKAKIVIFSCPVDIIQ
TETKGTVLIKSADELLSFSSGEESLLESQIKAIADAGVKVVVAGGKVGDM
ALHFLNKYGLMAVRLNSKFDLRRLSRSVNATVLPRITTPSQEELGYCDKV
CIEELGDTTIVAFRNEGKDSRIATVVIRGATDNFMDDIERALDDAINNFK
CLTRDGRYLPGAGATEIELATQLSAYADTLPGLDQYAVRKFANALEVFPK
ALAENSGINGTEIVNQLYLAHNNEAGKTIGFDIEAEKASTIDTTKAKLFD
LYQSKFWGLKYAVGAAATILKVDQIIMAKRAGGPKVRQAAGSDDESASFL
DH

BO07229.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG8258-PA 546 CG8258-PA 1..546 1..546 2729 100 Plus
T-cp1-PA 557 CG5374-PA 23..534 31..526 551 28.8 Plus
T-cp1-PB 557 CG5374-PB 23..534 31..526 551 28.8 Plus
CG5525-PA 533 CG5525-PA 3..529 6..526 545 29.5 Plus
Tcp-1eta-PA 544 CG8351-PA 7..527 14..534 541 27.4 Plus