Clone Sequence Records
BO07235.3prime Sequence
914 bp (763 high quality bases) assembled on 2005-12-04
> BO07235.3prime
ATGGTCTAGAAAGCTTGCCGTGAAAAGGTCCTTAAACTGCTGTAGATCCT
GCTGATGAACGGGTTTCTGACTAATAGAGCCCAAAAGTTTGCAGTCTTCC
AAGCGCACGCCATGCTCAACAAGAGCTGCTATCAGTCGCGAGGTGTAGAG
CACTGGTCCGCCCACCATGTGCAAGAAATCATAGTGCTTCTCCCGCCGCG
TGCTAAAAAGGATTCGCTTAGAGACAAAGTCTCCGTAGTTGCTGATACGT
CCCACACACACATAGCGCTGCAGTGAGGGGGCATAAACTTCGATGACTGC
CCGGATACTCTCCGCCGGAGTTAGATCTGCTGCTGTTGCATAAGAAATCC
TGAATGGTATGTCCAGTGCTTTGTAGAAATCAGTTGCCAGATTGAGAATA
TGCTCTAGTTGGGAGTCCGCTTCGTTGTCCGTTTGCGTTGCCACAAAGAT
TTGTACCGCATTCGTTTGTGTCGCCGTATAAAGACTAGGAATGGGCCCAT
ACAAATCCGCTTCCGCTCTGTTGTAGCTCCGACCACAGCAGACATACCGA
AGGGGCAGCACCGAGGGATACACGCACAGCTTGGTCATGGCACCAAGGTA
GCTCTCGAAGGACGCACCTCCAGTCAAATAGGCGGTATTGATCTTGTTTT
GCAGGTGCTCTTCCTGAACCAGATGATAGTCGGATAAGGGTGTCGCATTT
GCTTCCAGGAGAACGCAACGCACAAAGTCCGGATTGGCGGTTTGAATGAA
GTGCCCGTGGTTGACGAAATAGCGGGCCAGGGATTGCATGGCATTTACGT
CAAAAAGAGCAGCCTGCTCCATCAAGTAGTAACGATTGTTGTCTACAAAA
TGTACAAGTTCCTGGCGTGCCAAGTGGGATGTAGTCTTATTTTCTGATTT
GGGTATCCCATGAC
BO07235.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31133-PA | 1395 | CG31133-RA | 497..1392 | 914..19 | 4480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:20:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slimp-RA | 1532 | CG31133-RA | 563..1458 | 914..19 | 4480 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:20:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24147510..24148405 | 19..914 | 4480 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:20:04 has no hits.
BO07235.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:05 Download gff for
BO07235.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31133-PA | 497..1395 | 15..914 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:23 Download gff for
BO07235.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31133-PA | 497..1395 | 15..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:24:32 Download gff for
BO07235.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slimp-RA | 563..1461 | 15..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:48:32 Download gff for
BO07235.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slimp-RA | 563..1461 | 15..914 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:48:32 Download gff for
BO07235.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24147506..24148405 | 15..914 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:24:32 Download gff for
BO07235.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19973228..19974127 | 15..914 | 99 | | Plus |
BO07235.5prime Sequence
952 bp (785 high quality bases) assembled on 2005-12-04
> BO07235.5prime
GAAGTTATCAGTCGACATGTTGAGCCTGCGAAGTGTATTAAAACACTGCC
TTTCGGCAAAGAAAACGTGTAGCAGAAACATCTCCGCGCTGTACATAACC
GGCGATAAAGCGAACGAAAACTATGTGACTCTGCAGCCGTACATGGACTT
CAATAAAACCTTTGGAGAGCGGCAATTTTTGGAGCAGAGCATCTCCAGCC
GGGGATTGGACATTCGTTTGGAAACTGTGCTCAGCAAGTACGAGAAGTAT
AAAACACATCACGCTCAGCTGTCCAAGGTGGCGGAGGAACGCGAAAGGGT
GACCAAGCGCCTAAAGGAGCTAACGAAATCTGGTAGTAGTGCGGTTCAGC
TGGAGGAGTTGAAAGAGCATGGGAAATCGTTGCGCAATGAGCTAAAGGCT
CTGAAGCAGACTCTCTATCCCATAGAGGATGACTTTATTCATGACTATCT
GCACTTGCCCAACCTTCTGCATGTCCAGTGCCCTGTTGGAGGGGAGGAAA
AGCTTCTCTATCGTCATGGGATACCCAAATCAGAAAATAAGACTACATCC
CACTTGGCACGCCAGGAACTTGTACATTTTGTAGACAACAATCGTTACTA
CTTGATGGAGCAGGCTGCTCTTTTTGACGTAAATGCCATGCAATCCCTGG
CCCGCTATTTCGTCAACCACGGGCACTTCATTCAAACCGCCAATCCGGAC
TTTGTGCGTTGCGTTCTCCTGGAAGCAAATGCGACACCCTTATCCGACTA
TCATCTGGTTCAGGAAGAGCACCTGCAAAACAAGATCAATACCGCCTATT
TGACTGGAGGTGCGTCCTTCGAGAGCTACCTTGGTGCCATGACCAAGCTG
TGCGTGTATCCCTCGGTGCTGCCCCTTCGGTATGTCTGCTGTGGTCGGAG
CTACAACAGAGCGGAAGCGGATTTGGATGGGGCCCATCCTAGTCTTTATA
CG
BO07235.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31133-PA | 1395 | CG31133-RA | 1..936 | 17..952 | 4580 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:28:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slimp-RA | 1532 | CG31133-RA | 67..1002 | 17..952 | 4620 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:28:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24147966..24148901 | 952..17 | 4620 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:28:11 has no hits.
BO07235.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:06 Download gff for
BO07235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31133-PA | 1..936 | 17..952 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:24 Download gff for
BO07235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31133-PA | 1..936 | 17..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:02:52 Download gff for
BO07235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slimp-RA | 67..1002 | 17..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:00:14 Download gff for
BO07235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slimp-RA | 67..1002 | 17..952 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:00:14 Download gff for
BO07235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24147966..24148901 | 17..952 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:02:52 Download gff for
BO07235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19973688..19974623 | 17..952 | 99 | | Minus |
BO07235.complete Sequence
1426 bp (1426 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630715
> BO07235.complete
GAAGTTATCAGTCGACATGTTGAGCCTGCGAAGTGTATTAAAACACTGCC
TTTCGGCAAAGAAAACGTGTAGCAGAAACATCTCCGCGCTGTACATAACC
GGCGATAAAGCGAACGAAAACTATGTGACTCTGCAGCCGTACATGGACTT
CAATAAAACCTTTGGAGAGCGGCAATTTTTGGAGCAGAGCATCTCCAGCC
GGGGATTGGACATTCGTTTGGAAACTGTGCTCAGCAAGTACGAGAAGTAT
AAAACACATCACGCTCAGCTGTCCAAGGTGGCGGAGGAACGCGAAAGGGT
GACCAAGCGCCTAAAGGAGCTAACGAAATCTGGTAGTAGTGCGGTTCAGC
TGGAGGAGTTGAAAGAGCATGGGAAATCGTTGCGCAATGAGCTAAAGGCT
CTGAAGCAGACTCTCTATCCCATAGAGGATGACTTTATTCATGACTATCT
GCACTTGCCCAACCTTCTGCATGTCCAGTGCCCTGTTGGAGGGGAGGAAA
AGCTTCTCTATCGTCATGGGATACCCAAATCAGAAAATAAGACTACATCC
CACTTGGCACGCCAGGAACTTGTACATTTTGTAGACAACAATCGTTACTA
CTTGATGGAGCAGGCTGCTCTTTTTGACGTAAATGCCATGCAATCCCTGG
CCCGCTATTTCGTCAACCACGGGCACTTCATTCAAACCGCCAATCCGGAC
TTTGTGCGTTGCGTTCTCCTGGAAGCAAATGCGACACCCTTATCCGACTA
TCATCTGGTTCAGGAAGAGCACCTGCAAAACAAGATCAATACCGCCTATT
TGACTGGAGGTGCGTCCTTCGAGAGCTACCTTGGTGCCATGACCAAGCTG
TGCGTGTATCCCTCGGTGCTGCCCCTTCGGTATGTCTGCTGTGGTCGGAG
CTACAACAGAGCGGAAGCGGATTTGTATGGGCCCATTCCTAGTCTTTATA
CGGCGACACAAACGAATGCGGTACAAATCTTTGTGGCAACGCAAACGGAC
AACGAAGCGGACTCCCAACTAGAGCATATTCTCAATCTGGCAACTGATTT
CTACAAAGCACTGGACATACCATTCAGGATTTCTTATGCAACAGCAGCAG
ATCTAACTCCGGCGGAGAGTATCCGGGCAGTCATCGAAGTTTATGCCCCC
TCACTGCAGCGCTATGTGTGTGTGGGACGTATCAGCAACTACGGAGACTT
TGTCTCTAAGCGAATCCTTTTTAGCACGCGGCGGGAGAAGCACTATGATT
TCTTGCACATGGTGGGCGGACCAGTGCTCTACACCTCGCGACTGATAGCA
GCTCTTGTTGAGCATGGCGTGCGCTTGGAAGACTGCAAACTTTTGGGCTC
TATTAGTCAGAAACCCGTTCATCAGCAGGATCTACAGCAGTTTAAGGACC
TTTTCACGGCAAGCTTTCTAGACCAT
BO07235.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:00:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slimp-RA | 1395 | CG31133-PA | 1..1392 | 17..1408 | 6960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:00:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slimp-RA | 1532 | CG31133-RA | 67..1458 | 17..1408 | 6960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:00:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24147510..24148901 | 1408..17 | 6960 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:00:11 has no hits.
BO07235.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:38 Download gff for
BO07235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31133-RA | 1..1395 | 17..1412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:54 Download gff for
BO07235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31133-RA | 23..1417 | 17..1412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:09 Download gff for
BO07235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slimp-RA | 72..1458 | 22..1410 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:38 Download gff for
BO07235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31133-RA | 23..1417 | 17..1412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:08 Download gff for
BO07235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slimp-RA | 72..1458 | 22..1410 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:08 Download gff for
BO07235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24147508..24148896 | 22..1410 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:09 Download gff for
BO07235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19973230..19974618 | 22..1410 | 99 | | Minus |
BO07235.pep Sequence
Translation from 16 to 1426
> BO07235.pep
MLSLRSVLKHCLSAKKTCSRNISALYITGDKANENYVTLQPYMDFNKTFG
ERQFLEQSISSRGLDIRLETVLSKYEKYKTHHAQLSKVAEERERVTKRLK
ELTKSGSSAVQLEELKEHGKSLRNELKALKQTLYPIEDDFIHDYLHLPNL
LHVQCPVGGEEKLLYRHGIPKSENKTTSHLARQELVHFVDNNRYYLMEQA
ALFDVNAMQSLARYFVNHGHFIQTANPDFVRCVLLEANATPLSDYHLVQE
EHLQNKINTAYLTGGASFESYLGAMTKLCVYPSVLPLRYVCCGRSYNRAE
ADLYGPIPSLYTATQTNAVQIFVATQTDNEADSQLEHILNLATDFYKALD
IPFRISYATAADLTPAESIRAVIEVYAPSLQRYVCVGRISNYGDFVSKRI
LFSTRREKHYDFLHMVGGPVLYTSRLIAALVEHGVRLEDCKLLGSISQKP
VHQQDLQQFKDLFTASFLDH
BO07235.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slimp-PA | 464 | CG31133-PA | 1..464 | 1..464 | 2401 | 100 | Plus |
| Aats-ser-PB | 417 | CG4938-PB | 85..376 | 147..432 | 180 | 25 | Plus |
| Aats-ser-PA | 417 | CG4938-PA | 85..376 | 147..432 | 180 | 25 | Plus |
