Clone Sequence Records
BO07236.3prime Sequence
821 bp (749 high quality bases) assembled on 2005-12-04
> BO07236.3prime
ATGGTCTAGAAAGCTTGCTATGGTCTCGTTAATAAGGTCGATGGCCCTAA
ACTGGTTGGCCACATTTACGGTCCAGTCCGATTGGTGTCCAGCGGTGAAC
TCCTTTACAAAACGGTAGTTGCAGATGAAAACCTTATCCTGGTACTCGGG
AAGGGTCCCCATGTTCCAGGGTATTTCCTCGCCGCGTTCCCGCATCTCGG
ATAGACCACGCATTACGTGAAACACCATGGTGATCTCTACGAAACGCTTC
TGCAGCTTGTCGTTTGCATCGTCAAACATAATACCTACCTGATAGGGAAA
GCTGAGGTATATGTCGCTCTCCTTGATTTCTAGCTGCCTCCGTTGCGTCA
TTGACAGTTTTTGGATTACCGGTCTAAGCTCTGCGATCGCCTCGGGCGAG
ACAAGATTGTCCAGGGAGTCTAAGTCGCCGCCCATCAGTTTTGAGGATAC
TACCTGCAGCGCTTGCTTGGCGCCGTATATGAAGTCCTTGAGTTGAAACT
CGCTGTCGAAGTAGGGTCGAATTATGAACTGTATGGTGATCCAATTTTTT
AACGAGTTAAGCGCCGATGGCCACACGATCTCTGGAAAGTCCATTAGGCG
AGGCAGGCGGTTAAGGCTCTCTCTGGCATTCTGCTCCTTCTTGTCTTGCT
CCTGCGGCAGCGAGGCGAAAGACCGACTGACCGGTTGTGTTGGCTTCGAG
ATGGACCCAGCTTCCTGTCCCCCGGAGGCTGCCACTGTGGGTCTGGGCTG
CAAACGCATCAGGGATATCCGGGCCATGCCCAAGCAGCGTATAAGCGTGT
GCTGCATGTCGACTGATAACT
BO07236.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3776-PA | 792 | CG3776-RA | 1..789 | 807..19 | 3945 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:59:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3776-RB | 1004 | CG3776-RB | 104..892 | 807..19 | 3945 | 100 | Minus |
CG3776-RA | 937 | CG3776-RA | 37..825 | 807..19 | 3945 | 100 | Minus |
CG3776-RC | 751 | CG3776-RC | 37..556 | 807..288 | 2600 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:59:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24969847..24970202 | 807..452 | 1780 | 100 | Minus |
2R | 25286936 | 2R | 24970251..24970549 | 455..157 | 1495 | 100 | Minus |
2R | 25286936 | 2R | 24970604..24970743 | 158..19 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:59:44 has no hits.
BO07236.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:07 Download gff for
BO07236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3776-PA | 1..792 | 15..807 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:26 Download gff for
BO07236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3776-PA | 1..792 | 15..807 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:16:20 Download gff for
BO07236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3776-RA | 31..828 | 15..816 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:33:32 Download gff for
BO07236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3776-RA | 31..828 | 15..816 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:33:32 Download gff for
BO07236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24969841..24970200 | 454..816 | 98 | -> | Minus |
2R | 24970253..24970548 | 158..453 | 100 | -> | Minus |
2R | 24970605..24970746 | 15..157 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:16:20 Download gff for
BO07236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20857364..20857723 | 454..816 | 98 | -> | Minus |
arm_2R | 20857776..20858071 | 158..453 | 100 | -> | Minus |
arm_2R | 20858128..20858269 | 15..157 | 98 | | Minus |
BO07236.5prime Sequence
821 bp (788 high quality bases) assembled on 2005-12-04
> BO07236.5prime
GAAGTTATCAGTCGACATGCAGCACACGCTTATACGCTGCTTGGGCATGG
CCCGGATATCCCTGATGCGTTTGCAGCCCAGACCCACAGTGGCAGCCTCC
GGGGGACAGGAAGCTGGGTCCATCTCGAAGCCAACACAACCGGTCAGTCG
GTCTTTCGCCTCGCTGCCGCAGGAGCAAGACAAGAAGGAGCAGAATGCCA
GAGAGAGCCTTAACCGCCTGCCTCGCCTAATGGACTTTCCAGAGATCGTG
TGGCCATCGGCGCTTAACTCGTTAAAAAATTGGATCACCATACAGTTCAT
AATTCGACCCTACTTCGACAGCGAGTTTCAACTCAAGGACTTCATATACG
GCGCCAAGCAAGCGCTGCAGGTAGTATCCTCAAAACTGATGGGCGGCGAC
TTAGACTCCCTGGACAATCTTGTCTCGCCCGAGGCGATCGCAGAGCTTAG
ACCGGTAATCCAAAAACTGTCAATGACGCAACGGAGGCAGCTAGAAATCA
AGGAGAGCGACATATACCTCAGCTTTCCCTATCAGGTAGGTATTATGTTT
GACGATGCAAACGACAAGCTGCAGAAGCGTTTCGTAGAGATCACCATGGT
GTTTCACGTAATGCGTGGTCTATCCGAGATGCGGGAACGCGGCGAGGAAA
TACCCTGGAACATGGGGACCCTTCCCGAGTACCAGGATAAGGTTTTCATC
TGCAACTACCGTTTTGTAAAGGAGTTCACCGCTGGACACCAATCGGACTG
GACCGTAAATGTGGCCAACCAGTTTAGGGCCATCGACCTTATTAACGAGA
CCATAGCAAGCTTTCTAGACC
BO07236.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3776-PA | 792 | CG3776-RA | 1..789 | 17..805 | 3945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:20:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3776-RB | 1004 | CG3776-RB | 104..892 | 17..805 | 3945 | 100 | Plus |
CG3776-RA | 937 | CG3776-RA | 37..825 | 17..805 | 3945 | 100 | Plus |
CG3776-RC | 751 | CG3776-RC | 37..556 | 17..536 | 2600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:20:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24969847..24970202 | 17..372 | 1780 | 100 | Plus |
2R | 25286936 | 2R | 24970251..24970549 | 369..667 | 1495 | 100 | Plus |
2R | 25286936 | 2R | 24970604..24970743 | 666..805 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:20:13 has no hits.
BO07236.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:08 Download gff for
BO07236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3776-PA | 1..792 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:27 Download gff for
BO07236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3776-PA | 1..792 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:24:34 Download gff for
BO07236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3776-RA | 31..828 | 8..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:48:34 Download gff for
BO07236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3776-RA | 31..828 | 8..809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:48:34 Download gff for
BO07236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24969841..24970200 | 8..370 | 98 | -> | Plus |
2R | 24970253..24970548 | 371..666 | 100 | -> | Plus |
2R | 24970605..24970746 | 667..809 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:24:34 Download gff for
BO07236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20857364..20857723 | 8..370 | 98 | -> | Plus |
arm_2R | 20857776..20858071 | 371..666 | 100 | -> | Plus |
arm_2R | 20858128..20858269 | 667..809 | 98 | | Plus |
BO07236.complete Sequence
823 bp (823 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630716
> BO07236.complete
GAAGTTATCAGTCGACATGCAGCACACGCTTATACGCTGCTTGGGCATGG
CCCGGATATCCCTGATGCGTTTGCAGCCCAGACCCACAGTGGCAGCCTCC
GGGGGACAGGAAGCTGGGTCCATCTCGAAGCCAACACAACCGGTCAGTCG
GTCTTTCGCCTCGCTGCCGCAGGAGCAAGACAAGAAGGAGCAGAATGCCA
GAGAGAGCCTTAACCGCCTGCCTCGCCTAATGGACTTTCCAGAGATCGTG
TGGCCATCGGCGCTTAACTCGTTAAAAAATTGGATCACCATACAGTTCAT
AATTCGACCCTACTTCGACAGCGAGTTTCAACTCAAGGACTTCATATACG
GCGCCAAGCAAGCGCTGCAGGTAGTATCCTCAAAACTGATGGGCGGCGAC
TTAGACTCCCTGGACAATCTTGTCTCGCCCGAGGCGATCGCAGAGCTTAG
ACCGGTAATCCAAAAACTGTCAATGACGCAACGGAGGCAGCTAGAAATCA
AGGAGAGCGACATATACCTCAGCTTTCCCTATCAGGTAGGTATTATGTTT
GACGATGCAAACGACAAGCTGCAGAAGCGTTTCGTAGAGATCACCATGGT
GTTTCACGTAATGCGTGGTCTATCCGAGATGCGGGAACGCGGCGAGGAAA
TACCCTGGAACATGGGGACCCTTCCCGAGTACCAGGATAAGGTTTTCATC
TGCAACTACCGTTTTGTAAAGGAGTTCACCGCTGGACACCAATCGGACTG
GACCGTAAATGTGGCCAACCAGTTTAGGGCCATCGACCTTATTAACGAGA
CCATAGCAAGCTTTCTAGACCAT
BO07236.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:36:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3776-RB | 792 | CG3776-PB | 1..789 | 17..805 | 3945 | 100 | Plus |
CG3776-RA | 792 | CG3776-PA | 1..789 | 17..805 | 3945 | 100 | Plus |
CG3776-RC | 606 | CG3776-PC | 1..520 | 17..536 | 2600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:36:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3776-RB | 1004 | CG3776-RB | 104..892 | 17..805 | 3945 | 100 | Plus |
CG3776-RA | 937 | CG3776-RA | 37..825 | 17..805 | 3945 | 100 | Plus |
CG3776-RC | 751 | CG3776-RC | 37..556 | 17..536 | 2600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:36:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24969847..24970202 | 17..372 | 1780 | 100 | Plus |
2R | 25286936 | 2R | 24970251..24970549 | 369..667 | 1495 | 100 | Plus |
2R | 25286936 | 2R | 24970604..24970743 | 666..805 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:36:19 has no hits.
BO07236.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:39 Download gff for
BO07236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jhebp29-RA | 1..792 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:05:02 Download gff for
BO07236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jhebp29-RA | 69..866 | 8..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:16:59 Download gff for
BO07236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3776-RA | 37..825 | 17..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:39 Download gff for
BO07236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jhebp29-RA | 69..866 | 8..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:10 Download gff for
BO07236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3776-RA | 37..825 | 17..807 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:26:10 Download gff for
BO07236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24970605..24970743 | 667..807 | 98 | | Plus |
2R | 24969847..24970200 | 17..370 | 100 | -> | Plus |
2R | 24970253..24970548 | 371..666 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:16:59 Download gff for
BO07236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20857370..20857723 | 17..370 | 100 | -> | Plus |
arm_2R | 20857776..20858071 | 371..666 | 100 | -> | Plus |
arm_2R | 20858128..20858266 | 667..807 | 98 | | Plus |
BO07236.pep Sequence
Translation from 16 to 823
> BO07236.pep
MQHTLIRCLGMARISLMRLQPRPTVAASGGQEAGSISKPTQPVSRSFASL
PQEQDKKEQNARESLNRLPRLMDFPEIVWPSALNSLKNWITIQFIIRPYF
DSEFQLKDFIYGAKQALQVVSSKLMGGDLDSLDNLVSPEAIAELRPVIQK
LSMTQRRQLEIKESDIYLSFPYQVGIMFDDANDKLQKRFVEITMVFHVMR
GLSEMRERGEEIPWNMGTLPEYQDKVFICNYRFVKEFTAGHQSDWTVNVA
NQFRAIDLINETIASFLDH
BO07236.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3776-PB | 263 | CG3776-PB | 1..263 | 1..263 | 1353 | 100 | Plus |
CG3776-PA | 263 | CG3776-PA | 1..263 | 1..263 | 1353 | 100 | Plus |
CG3776-PC | 201 | CG3776-PC | 1..173 | 1..173 | 874 | 100 | Plus |