Clone BO07236 Report

Search the DGRC for BO07236

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:72
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptCG3776-RA
Protein status:BO07236.pep: validated full length
Sequenced Size:823

Clone Sequence Records

BO07236.3prime Sequence

821 bp (749 high quality bases) assembled on 2005-12-04

> BO07236.3prime
ATGGTCTAGAAAGCTTGCTATGGTCTCGTTAATAAGGTCGATGGCCCTAA
ACTGGTTGGCCACATTTACGGTCCAGTCCGATTGGTGTCCAGCGGTGAAC
TCCTTTACAAAACGGTAGTTGCAGATGAAAACCTTATCCTGGTACTCGGG
AAGGGTCCCCATGTTCCAGGGTATTTCCTCGCCGCGTTCCCGCATCTCGG
ATAGACCACGCATTACGTGAAACACCATGGTGATCTCTACGAAACGCTTC
TGCAGCTTGTCGTTTGCATCGTCAAACATAATACCTACCTGATAGGGAAA
GCTGAGGTATATGTCGCTCTCCTTGATTTCTAGCTGCCTCCGTTGCGTCA
TTGACAGTTTTTGGATTACCGGTCTAAGCTCTGCGATCGCCTCGGGCGAG
ACAAGATTGTCCAGGGAGTCTAAGTCGCCGCCCATCAGTTTTGAGGATAC
TACCTGCAGCGCTTGCTTGGCGCCGTATATGAAGTCCTTGAGTTGAAACT
CGCTGTCGAAGTAGGGTCGAATTATGAACTGTATGGTGATCCAATTTTTT
AACGAGTTAAGCGCCGATGGCCACACGATCTCTGGAAAGTCCATTAGGCG
AGGCAGGCGGTTAAGGCTCTCTCTGGCATTCTGCTCCTTCTTGTCTTGCT
CCTGCGGCAGCGAGGCGAAAGACCGACTGACCGGTTGTGTTGGCTTCGAG
ATGGACCCAGCTTCCTGTCCCCCGGAGGCTGCCACTGTGGGTCTGGGCTG
CAAACGCATCAGGGATATCCGGGCCATGCCCAAGCAGCGTATAAGCGTGT
GCTGCATGTCGACTGATAACT

BO07236.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG3776-PA 792 CG3776-RA 1..789 807..19 3945 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:59:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG3776-RB 1004 CG3776-RB 104..892 807..19 3945 100 Minus
CG3776-RA 937 CG3776-RA 37..825 807..19 3945 100 Minus
CG3776-RC 751 CG3776-RC 37..556 807..288 2600 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:59:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24969847..24970202 807..452 1780 100 Minus
2R 25286936 2R 24970251..24970549 455..157 1495 100 Minus
2R 25286936 2R 24970604..24970743 158..19 700 100 Minus
Blast to na_te.dros performed on 2015-02-12 15:59:44 has no hits.

BO07236.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:07 Download gff for BO07236.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3776-PA 1..792 15..807 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:26 Download gff for BO07236.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3776-PA 1..792 15..807 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:16:20 Download gff for BO07236.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3776-RA 31..828 15..816 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:33:32 Download gff for BO07236.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3776-RA 31..828 15..816 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:33:32 Download gff for BO07236.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24969841..24970200 454..816 98 -> Minus
2R 24970253..24970548 158..453 100 -> Minus
2R 24970605..24970746 15..157 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:16:20 Download gff for BO07236.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20857364..20857723 454..816 98 -> Minus
arm_2R 20857776..20858071 158..453 100 -> Minus
arm_2R 20858128..20858269 15..157 98   Minus

BO07236.5prime Sequence

821 bp (788 high quality bases) assembled on 2005-12-04

> BO07236.5prime
GAAGTTATCAGTCGACATGCAGCACACGCTTATACGCTGCTTGGGCATGG
CCCGGATATCCCTGATGCGTTTGCAGCCCAGACCCACAGTGGCAGCCTCC
GGGGGACAGGAAGCTGGGTCCATCTCGAAGCCAACACAACCGGTCAGTCG
GTCTTTCGCCTCGCTGCCGCAGGAGCAAGACAAGAAGGAGCAGAATGCCA
GAGAGAGCCTTAACCGCCTGCCTCGCCTAATGGACTTTCCAGAGATCGTG
TGGCCATCGGCGCTTAACTCGTTAAAAAATTGGATCACCATACAGTTCAT
AATTCGACCCTACTTCGACAGCGAGTTTCAACTCAAGGACTTCATATACG
GCGCCAAGCAAGCGCTGCAGGTAGTATCCTCAAAACTGATGGGCGGCGAC
TTAGACTCCCTGGACAATCTTGTCTCGCCCGAGGCGATCGCAGAGCTTAG
ACCGGTAATCCAAAAACTGTCAATGACGCAACGGAGGCAGCTAGAAATCA
AGGAGAGCGACATATACCTCAGCTTTCCCTATCAGGTAGGTATTATGTTT
GACGATGCAAACGACAAGCTGCAGAAGCGTTTCGTAGAGATCACCATGGT
GTTTCACGTAATGCGTGGTCTATCCGAGATGCGGGAACGCGGCGAGGAAA
TACCCTGGAACATGGGGACCCTTCCCGAGTACCAGGATAAGGTTTTCATC
TGCAACTACCGTTTTGTAAAGGAGTTCACCGCTGGACACCAATCGGACTG
GACCGTAAATGTGGCCAACCAGTTTAGGGCCATCGACCTTATTAACGAGA
CCATAGCAAGCTTTCTAGACC

BO07236.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG3776-PA 792 CG3776-RA 1..789 17..805 3945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:20:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG3776-RB 1004 CG3776-RB 104..892 17..805 3945 100 Plus
CG3776-RA 937 CG3776-RA 37..825 17..805 3945 100 Plus
CG3776-RC 751 CG3776-RC 37..556 17..536 2600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:20:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24969847..24970202 17..372 1780 100 Plus
2R 25286936 2R 24970251..24970549 369..667 1495 100 Plus
2R 25286936 2R 24970604..24970743 666..805 700 100 Plus
Blast to na_te.dros performed on 2015-02-04 20:20:13 has no hits.

BO07236.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:08 Download gff for BO07236.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3776-PA 1..792 17..809 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:27 Download gff for BO07236.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3776-PA 1..792 17..809 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:24:34 Download gff for BO07236.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3776-RA 31..828 8..809 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:48:34 Download gff for BO07236.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3776-RA 31..828 8..809 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:48:34 Download gff for BO07236.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24969841..24970200 8..370 98 -> Plus
2R 24970253..24970548 371..666 100 -> Plus
2R 24970605..24970746 667..809 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:24:34 Download gff for BO07236.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20857364..20857723 8..370 98 -> Plus
arm_2R 20857776..20858071 371..666 100 -> Plus
arm_2R 20858128..20858269 667..809 98   Plus

BO07236.complete Sequence

823 bp (823 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630716

> BO07236.complete
GAAGTTATCAGTCGACATGCAGCACACGCTTATACGCTGCTTGGGCATGG
CCCGGATATCCCTGATGCGTTTGCAGCCCAGACCCACAGTGGCAGCCTCC
GGGGGACAGGAAGCTGGGTCCATCTCGAAGCCAACACAACCGGTCAGTCG
GTCTTTCGCCTCGCTGCCGCAGGAGCAAGACAAGAAGGAGCAGAATGCCA
GAGAGAGCCTTAACCGCCTGCCTCGCCTAATGGACTTTCCAGAGATCGTG
TGGCCATCGGCGCTTAACTCGTTAAAAAATTGGATCACCATACAGTTCAT
AATTCGACCCTACTTCGACAGCGAGTTTCAACTCAAGGACTTCATATACG
GCGCCAAGCAAGCGCTGCAGGTAGTATCCTCAAAACTGATGGGCGGCGAC
TTAGACTCCCTGGACAATCTTGTCTCGCCCGAGGCGATCGCAGAGCTTAG
ACCGGTAATCCAAAAACTGTCAATGACGCAACGGAGGCAGCTAGAAATCA
AGGAGAGCGACATATACCTCAGCTTTCCCTATCAGGTAGGTATTATGTTT
GACGATGCAAACGACAAGCTGCAGAAGCGTTTCGTAGAGATCACCATGGT
GTTTCACGTAATGCGTGGTCTATCCGAGATGCGGGAACGCGGCGAGGAAA
TACCCTGGAACATGGGGACCCTTCCCGAGTACCAGGATAAGGTTTTCATC
TGCAACTACCGTTTTGTAAAGGAGTTCACCGCTGGACACCAATCGGACTG
GACCGTAAATGTGGCCAACCAGTTTAGGGCCATCGACCTTATTAACGAGA
CCATAGCAAGCTTTCTAGACCAT

BO07236.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG3776-RB 792 CG3776-PB 1..789 17..805 3945 100 Plus
CG3776-RA 792 CG3776-PA 1..789 17..805 3945 100 Plus
CG3776-RC 606 CG3776-PC 1..520 17..536 2600 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3776-RB 1004 CG3776-RB 104..892 17..805 3945 100 Plus
CG3776-RA 937 CG3776-RA 37..825 17..805 3945 100 Plus
CG3776-RC 751 CG3776-RC 37..556 17..536 2600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24969847..24970202 17..372 1780 100 Plus
2R 25286936 2R 24970251..24970549 369..667 1495 100 Plus
2R 25286936 2R 24970604..24970743 666..805 700 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:36:19 has no hits.

BO07236.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:39 Download gff for BO07236.complete
Subject Subject Range Query Range Percent Splice Strand
Jhebp29-RA 1..792 17..809 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:05:02 Download gff for BO07236.complete
Subject Subject Range Query Range Percent Splice Strand
Jhebp29-RA 69..866 8..809 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:16:59 Download gff for BO07236.complete
Subject Subject Range Query Range Percent Splice Strand
CG3776-RA 37..825 17..807 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:39 Download gff for BO07236.complete
Subject Subject Range Query Range Percent Splice Strand
Jhebp29-RA 69..866 8..809 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:10 Download gff for BO07236.complete
Subject Subject Range Query Range Percent Splice Strand
CG3776-RA 37..825 17..807 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:26:10 Download gff for BO07236.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24970605..24970743 667..807 98   Plus
2R 24969847..24970200 17..370 100 -> Plus
2R 24970253..24970548 371..666 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:16:59 Download gff for BO07236.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20857370..20857723 17..370 100 -> Plus
arm_2R 20857776..20858071 371..666 100 -> Plus
arm_2R 20858128..20858266 667..807 98   Plus

BO07236.pep Sequence

Translation from 16 to 823

> BO07236.pep
MQHTLIRCLGMARISLMRLQPRPTVAASGGQEAGSISKPTQPVSRSFASL
PQEQDKKEQNARESLNRLPRLMDFPEIVWPSALNSLKNWITIQFIIRPYF
DSEFQLKDFIYGAKQALQVVSSKLMGGDLDSLDNLVSPEAIAELRPVIQK
LSMTQRRQLEIKESDIYLSFPYQVGIMFDDANDKLQKRFVEITMVFHVMR
GLSEMRERGEEIPWNMGTLPEYQDKVFICNYRFVKEFTAGHQSDWTVNVA
NQFRAIDLINETIASFLDH

BO07236.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG3776-PB 263 CG3776-PB 1..263 1..263 1353 100 Plus
CG3776-PA 263 CG3776-PA 1..263 1..263 1353 100 Plus
CG3776-PC 201 CG3776-PC 1..173 1..173 874 100 Plus