Clone BO07237 Report

Search the DGRC for BO07237

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:72
Well:37
Vector:pDNR-Dual
Associated Gene/Transcriptp38b-RA
Protein status:BO07237.pep: validated full length
Sequenced Size:1129

Clone Sequence Records

BO07237.3prime Sequence

842 bp (714 high quality bases) assembled on 2005-12-04

> BO07237.3prime
ATGGTCTAGAAAGCTTGCCTGCTCTTTGGGCAGGAGCTCAGCGAAGGCGG
CTGTGGGCTTGAAGGCCGTCACCTCGCTGAAGACCATCTCCCGCCACTTC
TCCACCGGCAGCTCGTTCTCCTCGAAGCTCTGGTCGTAGAGCGCGGCGGT
CTGCTCATCGGTTGGATCGTGGTACTTCTCCATGTACGGATGGGCCAGCG
CCTGCTCGGCGGTTATGCGCTTGTCGGCGTCAAGTTCCAGCATCTTCTCC
AGCAAATCGATGGCCAGCGGATTGGCACCGCGGAAGATGTCGCGGAAATT
GCGGCGCGGCATCACCGGCAGTGAACGAATATAGTTTCTAGCGCTCTCCG
AGGAGATGCGGCTCATGAACTCATCAGCTGGCGTGCCCAGCACTTCCATG
ATGAGGTTCAGCTGATGGATGTGATCGGTTCCAGGGAACAGCGTGCGCCC
AGTCAGCAGCTCAGCCATGATGCAGCCCACCGACCAGATGTCCGCCGTCT
GGTTGTAGTGCATCCAGTTGAGCATGATCTCAGGCGCCCGGTACCATCGC
GTTGCGACGTATCCGGTCATCTCGCTTTCTGCGGGACGGGCCAAACCGAA
ATCCAGGATGCGAAGCTCACAGTCCTCGTTTACCGCAATGTTCGATGGCT
TTAGATCACGATGGATGACCCCAGCGCTGTGGATGTACTTCAGACCGCGC
AGGATTTGGTAGACCAGAAACTGGACATGATCATCAGACAGTTTCTGCGT
GCGTATTATGTTGTTCAGATCGGCGTCCATCAAGTGGGTCACCATGTACA
CTTGCTGGAACTGATCCAGCGAATCGGCGGGCTGTCCTGGAT

BO07237.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7393-PA 1098 p38b-RA 272..1095 842..19 4120 100 Minus
CG5475-PA 1101 Mpk2-RA 565..653 552..464 220 89.8 Minus
CG5475-PB 1101 Mpk2-RB 565..653 552..464 220 89.8 Minus
CG5475-PA 1101 Mpk2-RA 316..365 801..752 150 92 Minus
CG5475-PB 1101 Mpk2-RB 316..365 801..752 150 92 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:08:10
Subject Length Description Subject Range Query Range Score Percent Strand
p38b-RA 1821 CG7393-RA 481..1304 842..19 4120 100 Minus
p38a-RC 1474 CG5475-RC 482..1185 822..119 970 76 Minus
p38a-RB 1634 CG5475-RB 642..1345 822..119 970 76 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:08:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13781271..13782094 842..19 4120 100 Minus
3R 32079331 3R 24150705..24151408 119..822 970 75.9 Plus
Blast to na_te.dros performed on 2015-02-11 17:08:06 has no hits.

BO07237.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:09 Download gff for BO07237.3prime
Subject Subject Range Query Range Percent Splice Strand
p38b-PA 272..1098 15..842 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:29 Download gff for BO07237.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7393-PA 272..1098 15..842 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:42:29 Download gff for BO07237.3prime
Subject Subject Range Query Range Percent Splice Strand
p38b-RA 481..1307 15..842 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:57:14 Download gff for BO07237.3prime
Subject Subject Range Query Range Percent Splice Strand
p38b-RA 481..1307 15..842 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:57:14 Download gff for BO07237.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13781271..13782093 20..842 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:42:29 Download gff for BO07237.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13781271..13782093 20..842 100 -> Minus

BO07237.5prime Sequence

903 bp (872 high quality bases) assembled on 2005-12-04

> BO07237.5prime
GAAGTTATCAGTCGACATGTCGCGCAAAATGGCCAAATTCTACAAGCTGG
ACATCAATCGCACCGAGTGGGAAATCCCGGAAACATACCAGAACCTGCAA
CCCGTGGGTCAGGGTGCCTACGGCCAGGTCTGCAAGGCCGTGGTCCGCGG
AACCAGCACGAAGGTGGCCATCAAGAAGCTTGCCAGGCCCTTCCAGTCGG
CGGTCCATGCGAAGCGCACCTATCGGGAACTGCGGCTGCTGAAGCACATG
GATCACGAGAACGTTATTGGTCTGCTGGATGTCTTTCATCCAGGACAGCC
CGCCGATTCGCTGGATCAGTTCCAGCAAGTGTACATGGTGACCCACTTGA
TGGACGCCGATCTGAACAACATAATACGCACGCAGAAACTGTCTGATGAT
CATGTCCAGTTTCTGGTCTACCAAATCCTGCGCGGTCTGAAGTACATCCA
CAGCGCTGGGGTCATCCATCGTGATCTAAAGCCATCGAACATTGCGGTAA
ACGAGGACTGTGAGCTTCGCATCCTGGATTTCGGTTTGGCCCGTCCCGCA
GAAAGCGAGATGACCGGATACGTCGCAACGCGATGGTACCGGGCGCCTGA
GATCATGCTCAACTGGATGCACTACAACCAGACGGCGGACATCTGGTCGG
TGGGCTGCATCATGGCTGAGCTGCTGACTGGGCGCACGCTGTTCCCTGGA
ACCGATCACATCCATCAGCTGAACCTCATCATGGAAGTGCTGGGCACGCC
AGCTGATGAGTTCATGAGCCGCATCTCCTCGGAGAGCGCTAGAAACTATA
TTCGTTCACTGCCGGTGATGCCGCGCCGCAATTTCCGCGACATCTTCCGC
GGTGCCAATCCGCTGGCCATCGATTTGCTGGAGAAGATGCTGAAACTTGA
CGC

BO07237.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG7393-PA 1098 p38b-RA 1..887 17..903 4410 99.8 Plus
CG5475-PA 1101 Mpk2-RA 565..653 578..666 220 89.8 Plus
CG5475-PB 1101 Mpk2-RB 565..653 578..666 220 89.8 Plus
CG5475-PA 1101 Mpk2-RA 316..365 329..378 150 92 Plus
CG5475-PB 1101 Mpk2-RB 316..365 329..378 150 92 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
p38b-RA 1821 CG7393-RA 206..1096 13..903 4425 99.8 Plus
p38a-RC 1474 CG5475-RC 215..925 41..751 1255 78.7 Plus
p38a-RB 1634 CG5475-RB 375..1085 41..751 1255 78.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:33:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13780996..13781886 13..903 4425 99.8 Plus
3R 32079331 3R 24150965..24151675 751..41 1215 78.1 Minus
Blast to na_te.dros performed on 2015-02-11 03:33:47 has no hits.

BO07237.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:10 Download gff for BO07237.5prime
Subject Subject Range Query Range Percent Splice Strand
p38b-PA 1..887 17..903 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:30 Download gff for BO07237.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7393-PA 1..887 17..903 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:55:12 Download gff for BO07237.5prime
Subject Subject Range Query Range Percent Splice Strand
p38b-RA 203..1096 9..903 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:42:23 Download gff for BO07237.5prime
Subject Subject Range Query Range Percent Splice Strand
p38b-RA 203..1096 9..903 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:42:23 Download gff for BO07237.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13780993..13781886 9..903 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:55:12 Download gff for BO07237.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13780993..13781886 9..903 99   Plus

BO07237.complete Sequence

1129 bp (1129 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630717

> BO07237.complete
GAAGTTATCAGTCGACATGTCGCGCAAAATGGCCAAATTCTACAAGCTGG
ACATCAATCGCACCGAGTGGGAAATCCCGGAAACATACCAGAACCTGCAA
CCCGTGGGTCAGGGTGCCTACGGCCAGGTCTGCAAGGCCGTGGTCCGCGG
AACCAGCACGAAGGTGGCCATCAAGAAGCTTGCCAGGCCCTTCCAGTCGG
CGGTCCATGCGAAGCGCACCTATCGGGAACTGCGGCTGCTGAAGCACATG
GATCACGAGAACGTTATTGGTCTGCTGGATGTCTTTCATCCAGGACAGCC
CGCCGATTCGCTGGATCAGTTCCAGCAAGTGTACATGGTGACCCACTTGA
TGGACGCCGATCTGAACAACATAATACGCACGCAGAAACTGTCTGATGAT
CATGTCCAGTTTCTGGTCTACCAAATCCTGCGCGGTCTGAAGTACATCCA
CAGCGCTGGGGTCATCCATCGTGATCTAAAGCCATCGAACATTGCGGTAA
ACGAGGACTGTGAGCTTCGCATCCTGGATTTCGGTTTGGCCCGTCCCGCA
GAAAGCGAGATGACCGGATACGTCGCAACGCGATGGTACCGGGCGCCTGA
GATCATGCTCAACTGGATGCACTACAACCAGACGGCGGACATCTGGTCGG
TGGGCTGCATCATGGCTGAGCTGCTGACTGGGCGCACGCTGTTCCCTGGA
ACCGATCACATCCATCAGCTGAACCTCATCATGGAAGTGCTGGGCACGCC
AGCTGATGAGTTCATGAGCCGCATCTCCTCGGAGAGCGCTAGAAACTATA
TTCGTTCACTGCCGGTGATGCCGCGCCGCAATTTCCGCGACATCTTCCGC
GGTGCCAATCCGCTGGCCATCGATTTGCTGGAGAAGATGCTGGAACTTGA
CGCCGACAAGCGCATAACCGCCGAGCAGGCGCTGGCCCATCCGTACATGG
AGAAGTACCACGATCCAACCGATGAGCAGACCGCCGCGCTCTACGACCAG
AGCTTCGAGGAGAACGAGCTGCCGGTGGAGAAGTGGCGGGAGATGGTCTT
CAGCGAGGTGACGGCCTTCAAGCCCACAGCCGCCTTCGCTGAGCTCCTGC
CCAAAGAGCAGGCAAGCTTTCTAGACCAT

BO07237.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:20:15
Subject Length Description Subject Range Query Range Score Percent Strand
p38b-RA 1098 CG7393-PA 1..1095 17..1111 5475 100 Plus
p38a-RC 1101 CG5475-PC 28..998 41..1011 1270 75.4 Plus
p38a-RB 1101 CG5475-PB 28..998 41..1011 1270 75.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:20:16
Subject Length Description Subject Range Query Range Score Percent Strand
p38b-RA 1821 CG7393-RA 206..1304 13..1111 5480 99.9 Plus
p38a-RC 1474 CG5475-RC 215..1185 41..1011 1270 75.4 Plus
p38a-RB 1634 CG5475-RB 375..1345 41..1011 1270 75.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:20:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13780996..13782094 13..1111 5480 99.9 Plus
3R 32079331 3R 24150705..24151675 1011..41 1270 75.4 Minus
Blast to na_te.dros performed on 2014-11-27 16:20:14 has no hits.

BO07237.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:28 Download gff for BO07237.complete
Subject Subject Range Query Range Percent Splice Strand
p38b-RA 1..1098 17..1115 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:39 Download gff for BO07237.complete
Subject Subject Range Query Range Percent Splice Strand
p38b-RA 196..1300 9..1115 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:32 Download gff for BO07237.complete
Subject Subject Range Query Range Percent Splice Strand
p38b-RA 210..1304 17..1113 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:28 Download gff for BO07237.complete
Subject Subject Range Query Range Percent Splice Strand
p38b-RA 196..1300 9..1115 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:13 Download gff for BO07237.complete
Subject Subject Range Query Range Percent Splice Strand
p38b-RA 210..1304 17..1113 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:13 Download gff for BO07237.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13781000..13782094 17..1113 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:32 Download gff for BO07237.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13781000..13782094 17..1113 99   Plus

BO07237.pep Sequence

Translation from 16 to 1129

> BO07237.pep
MSRKMAKFYKLDINRTEWEIPETYQNLQPVGQGAYGQVCKAVVRGTSTKV
AIKKLARPFQSAVHAKRTYRELRLLKHMDHENVIGLLDVFHPGQPADSLD
QFQQVYMVTHLMDADLNNIIRTQKLSDDHVQFLVYQILRGLKYIHSAGVI
HRDLKPSNIAVNEDCELRILDFGLARPAESEMTGYVATRWYRAPEIMLNW
MHYNQTADIWSVGCIMAELLTGRTLFPGTDHIHQLNLIMEVLGTPADEFM
SRISSESARNYIRSLPVMPRRNFRDIFRGANPLAIDLLEKMLELDADKRI
TAEQALAHPYMEKYHDPTDEQTAALYDQSFEENELPVEKWREMVFSEVTA
FKPTAAFAELLPKEQASFLDH

BO07237.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
p38b-PA 365 CG7393-PA 1..365 1..365 1909 100 Plus
p38a-PC 366 CG5475-PC 8..362 7..361 1530 80.3 Plus
p38a-PB 366 CG5475-PB 8..362 7..361 1530 80.3 Plus
p38a-PA 366 CG5475-PA 8..362 7..361 1530 80.3 Plus
p38c-PA 356 CG33338-PA 1..349 5..353 941 50.7 Plus