Clone Sequence Records
BO07237.3prime Sequence
842 bp (714 high quality bases) assembled on 2005-12-04
> BO07237.3prime
ATGGTCTAGAAAGCTTGCCTGCTCTTTGGGCAGGAGCTCAGCGAAGGCGG
CTGTGGGCTTGAAGGCCGTCACCTCGCTGAAGACCATCTCCCGCCACTTC
TCCACCGGCAGCTCGTTCTCCTCGAAGCTCTGGTCGTAGAGCGCGGCGGT
CTGCTCATCGGTTGGATCGTGGTACTTCTCCATGTACGGATGGGCCAGCG
CCTGCTCGGCGGTTATGCGCTTGTCGGCGTCAAGTTCCAGCATCTTCTCC
AGCAAATCGATGGCCAGCGGATTGGCACCGCGGAAGATGTCGCGGAAATT
GCGGCGCGGCATCACCGGCAGTGAACGAATATAGTTTCTAGCGCTCTCCG
AGGAGATGCGGCTCATGAACTCATCAGCTGGCGTGCCCAGCACTTCCATG
ATGAGGTTCAGCTGATGGATGTGATCGGTTCCAGGGAACAGCGTGCGCCC
AGTCAGCAGCTCAGCCATGATGCAGCCCACCGACCAGATGTCCGCCGTCT
GGTTGTAGTGCATCCAGTTGAGCATGATCTCAGGCGCCCGGTACCATCGC
GTTGCGACGTATCCGGTCATCTCGCTTTCTGCGGGACGGGCCAAACCGAA
ATCCAGGATGCGAAGCTCACAGTCCTCGTTTACCGCAATGTTCGATGGCT
TTAGATCACGATGGATGACCCCAGCGCTGTGGATGTACTTCAGACCGCGC
AGGATTTGGTAGACCAGAAACTGGACATGATCATCAGACAGTTTCTGCGT
GCGTATTATGTTGTTCAGATCGGCGTCCATCAAGTGGGTCACCATGTACA
CTTGCTGGAACTGATCCAGCGAATCGGCGGGCTGTCCTGGAT
BO07237.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7393-PA | 1098 | p38b-RA | 272..1095 | 842..19 | 4120 | 100 | Minus |
CG5475-PA | 1101 | Mpk2-RA | 565..653 | 552..464 | 220 | 89.8 | Minus |
CG5475-PB | 1101 | Mpk2-RB | 565..653 | 552..464 | 220 | 89.8 | Minus |
CG5475-PA | 1101 | Mpk2-RA | 316..365 | 801..752 | 150 | 92 | Minus |
CG5475-PB | 1101 | Mpk2-RB | 316..365 | 801..752 | 150 | 92 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:08:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p38b-RA | 1821 | CG7393-RA | 481..1304 | 842..19 | 4120 | 100 | Minus |
p38a-RC | 1474 | CG5475-RC | 482..1185 | 822..119 | 970 | 76 | Minus |
p38a-RB | 1634 | CG5475-RB | 642..1345 | 822..119 | 970 | 76 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:08:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13781271..13782094 | 842..19 | 4120 | 100 | Minus |
3R | 32079331 | 3R | 24150705..24151408 | 119..822 | 970 | 75.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:08:06 has no hits.
BO07237.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:09 Download gff for
BO07237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p38b-PA | 272..1098 | 15..842 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:29 Download gff for
BO07237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7393-PA | 272..1098 | 15..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:42:29 Download gff for
BO07237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p38b-RA | 481..1307 | 15..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:57:14 Download gff for
BO07237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p38b-RA | 481..1307 | 15..842 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:57:14 Download gff for
BO07237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13781271..13782093 | 20..842 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:42:29 Download gff for
BO07237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13781271..13782093 | 20..842 | 100 | -> | Minus |
BO07237.5prime Sequence
903 bp (872 high quality bases) assembled on 2005-12-04
> BO07237.5prime
GAAGTTATCAGTCGACATGTCGCGCAAAATGGCCAAATTCTACAAGCTGG
ACATCAATCGCACCGAGTGGGAAATCCCGGAAACATACCAGAACCTGCAA
CCCGTGGGTCAGGGTGCCTACGGCCAGGTCTGCAAGGCCGTGGTCCGCGG
AACCAGCACGAAGGTGGCCATCAAGAAGCTTGCCAGGCCCTTCCAGTCGG
CGGTCCATGCGAAGCGCACCTATCGGGAACTGCGGCTGCTGAAGCACATG
GATCACGAGAACGTTATTGGTCTGCTGGATGTCTTTCATCCAGGACAGCC
CGCCGATTCGCTGGATCAGTTCCAGCAAGTGTACATGGTGACCCACTTGA
TGGACGCCGATCTGAACAACATAATACGCACGCAGAAACTGTCTGATGAT
CATGTCCAGTTTCTGGTCTACCAAATCCTGCGCGGTCTGAAGTACATCCA
CAGCGCTGGGGTCATCCATCGTGATCTAAAGCCATCGAACATTGCGGTAA
ACGAGGACTGTGAGCTTCGCATCCTGGATTTCGGTTTGGCCCGTCCCGCA
GAAAGCGAGATGACCGGATACGTCGCAACGCGATGGTACCGGGCGCCTGA
GATCATGCTCAACTGGATGCACTACAACCAGACGGCGGACATCTGGTCGG
TGGGCTGCATCATGGCTGAGCTGCTGACTGGGCGCACGCTGTTCCCTGGA
ACCGATCACATCCATCAGCTGAACCTCATCATGGAAGTGCTGGGCACGCC
AGCTGATGAGTTCATGAGCCGCATCTCCTCGGAGAGCGCTAGAAACTATA
TTCGTTCACTGCCGGTGATGCCGCGCCGCAATTTCCGCGACATCTTCCGC
GGTGCCAATCCGCTGGCCATCGATTTGCTGGAGAAGATGCTGAAACTTGA
CGC
BO07237.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7393-PA | 1098 | p38b-RA | 1..887 | 17..903 | 4410 | 99.8 | Plus |
CG5475-PA | 1101 | Mpk2-RA | 565..653 | 578..666 | 220 | 89.8 | Plus |
CG5475-PB | 1101 | Mpk2-RB | 565..653 | 578..666 | 220 | 89.8 | Plus |
CG5475-PA | 1101 | Mpk2-RA | 316..365 | 329..378 | 150 | 92 | Plus |
CG5475-PB | 1101 | Mpk2-RB | 316..365 | 329..378 | 150 | 92 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:33:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p38b-RA | 1821 | CG7393-RA | 206..1096 | 13..903 | 4425 | 99.8 | Plus |
p38a-RC | 1474 | CG5475-RC | 215..925 | 41..751 | 1255 | 78.7 | Plus |
p38a-RB | 1634 | CG5475-RB | 375..1085 | 41..751 | 1255 | 78.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:33:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13780996..13781886 | 13..903 | 4425 | 99.8 | Plus |
3R | 32079331 | 3R | 24150965..24151675 | 751..41 | 1215 | 78.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:33:47 has no hits.
BO07237.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:10 Download gff for
BO07237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p38b-PA | 1..887 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:30 Download gff for
BO07237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7393-PA | 1..887 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:55:12 Download gff for
BO07237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p38b-RA | 203..1096 | 9..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:42:23 Download gff for
BO07237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p38b-RA | 203..1096 | 9..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:42:23 Download gff for
BO07237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13780993..13781886 | 9..903 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:55:12 Download gff for
BO07237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13780993..13781886 | 9..903 | 99 | | Plus |
BO07237.complete Sequence
1129 bp (1129 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630717
> BO07237.complete
GAAGTTATCAGTCGACATGTCGCGCAAAATGGCCAAATTCTACAAGCTGG
ACATCAATCGCACCGAGTGGGAAATCCCGGAAACATACCAGAACCTGCAA
CCCGTGGGTCAGGGTGCCTACGGCCAGGTCTGCAAGGCCGTGGTCCGCGG
AACCAGCACGAAGGTGGCCATCAAGAAGCTTGCCAGGCCCTTCCAGTCGG
CGGTCCATGCGAAGCGCACCTATCGGGAACTGCGGCTGCTGAAGCACATG
GATCACGAGAACGTTATTGGTCTGCTGGATGTCTTTCATCCAGGACAGCC
CGCCGATTCGCTGGATCAGTTCCAGCAAGTGTACATGGTGACCCACTTGA
TGGACGCCGATCTGAACAACATAATACGCACGCAGAAACTGTCTGATGAT
CATGTCCAGTTTCTGGTCTACCAAATCCTGCGCGGTCTGAAGTACATCCA
CAGCGCTGGGGTCATCCATCGTGATCTAAAGCCATCGAACATTGCGGTAA
ACGAGGACTGTGAGCTTCGCATCCTGGATTTCGGTTTGGCCCGTCCCGCA
GAAAGCGAGATGACCGGATACGTCGCAACGCGATGGTACCGGGCGCCTGA
GATCATGCTCAACTGGATGCACTACAACCAGACGGCGGACATCTGGTCGG
TGGGCTGCATCATGGCTGAGCTGCTGACTGGGCGCACGCTGTTCCCTGGA
ACCGATCACATCCATCAGCTGAACCTCATCATGGAAGTGCTGGGCACGCC
AGCTGATGAGTTCATGAGCCGCATCTCCTCGGAGAGCGCTAGAAACTATA
TTCGTTCACTGCCGGTGATGCCGCGCCGCAATTTCCGCGACATCTTCCGC
GGTGCCAATCCGCTGGCCATCGATTTGCTGGAGAAGATGCTGGAACTTGA
CGCCGACAAGCGCATAACCGCCGAGCAGGCGCTGGCCCATCCGTACATGG
AGAAGTACCACGATCCAACCGATGAGCAGACCGCCGCGCTCTACGACCAG
AGCTTCGAGGAGAACGAGCTGCCGGTGGAGAAGTGGCGGGAGATGGTCTT
CAGCGAGGTGACGGCCTTCAAGCCCACAGCCGCCTTCGCTGAGCTCCTGC
CCAAAGAGCAGGCAAGCTTTCTAGACCAT
BO07237.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:20:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p38b-RA | 1098 | CG7393-PA | 1..1095 | 17..1111 | 5475 | 100 | Plus |
p38a-RC | 1101 | CG5475-PC | 28..998 | 41..1011 | 1270 | 75.4 | Plus |
p38a-RB | 1101 | CG5475-PB | 28..998 | 41..1011 | 1270 | 75.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:20:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p38b-RA | 1821 | CG7393-RA | 206..1304 | 13..1111 | 5480 | 99.9 | Plus |
p38a-RC | 1474 | CG5475-RC | 215..1185 | 41..1011 | 1270 | 75.4 | Plus |
p38a-RB | 1634 | CG5475-RB | 375..1345 | 41..1011 | 1270 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:20:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13780996..13782094 | 13..1111 | 5480 | 99.9 | Plus |
3R | 32079331 | 3R | 24150705..24151675 | 1011..41 | 1270 | 75.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:20:14 has no hits.
BO07237.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:28 Download gff for
BO07237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p38b-RA | 1..1098 | 17..1115 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:39 Download gff for
BO07237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p38b-RA | 196..1300 | 9..1115 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:32 Download gff for
BO07237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p38b-RA | 210..1304 | 17..1113 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:28 Download gff for
BO07237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p38b-RA | 196..1300 | 9..1115 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:13 Download gff for
BO07237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p38b-RA | 210..1304 | 17..1113 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:13 Download gff for
BO07237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13781000..13782094 | 17..1113 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:32 Download gff for
BO07237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13781000..13782094 | 17..1113 | 99 | | Plus |
BO07237.pep Sequence
Translation from 16 to 1129
> BO07237.pep
MSRKMAKFYKLDINRTEWEIPETYQNLQPVGQGAYGQVCKAVVRGTSTKV
AIKKLARPFQSAVHAKRTYRELRLLKHMDHENVIGLLDVFHPGQPADSLD
QFQQVYMVTHLMDADLNNIIRTQKLSDDHVQFLVYQILRGLKYIHSAGVI
HRDLKPSNIAVNEDCELRILDFGLARPAESEMTGYVATRWYRAPEIMLNW
MHYNQTADIWSVGCIMAELLTGRTLFPGTDHIHQLNLIMEVLGTPADEFM
SRISSESARNYIRSLPVMPRRNFRDIFRGANPLAIDLLEKMLELDADKRI
TAEQALAHPYMEKYHDPTDEQTAALYDQSFEENELPVEKWREMVFSEVTA
FKPTAAFAELLPKEQASFLDH
BO07237.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p38b-PA | 365 | CG7393-PA | 1..365 | 1..365 | 1909 | 100 | Plus |
p38a-PC | 366 | CG5475-PC | 8..362 | 7..361 | 1530 | 80.3 | Plus |
p38a-PB | 366 | CG5475-PB | 8..362 | 7..361 | 1530 | 80.3 | Plus |
p38a-PA | 366 | CG5475-PA | 8..362 | 7..361 | 1530 | 80.3 | Plus |
p38c-PA | 356 | CG33338-PA | 1..349 | 5..353 | 941 | 50.7 | Plus |