Clone BO07240 Report

Search the DGRC for BO07240

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:72
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptIlk-RA
Protein status:BO07240.pep: validated full length
Sequenced Size:1378

Clone Sequence Records

BO07240.3prime Sequence

844 bp (803 high quality bases) assembled on 2005-12-04

> BO07240.3prime
ATGGTCTAGAAAGCTTGCGCGGCGCATCTTCTCCAGAATGGGAACCACCA
TGTCGAACTTGGGCCGCTTGCCGGGATCCTCGTTCATGCAGATTGAAATC
AGCTTGGCCATGTGCGTCGATGTGCCTGGCGGAATCTTGACCCGCAGACC
TTCCAACGCAATTTTCATGCCGCACTCCATGGGCGACCACTCGGCGAAGG
GTACCTCGCGCGTAGTCAGCTCCCAAATAAGAATAGCAAAGCTCCACATG
TCACAGGCCTCCCAGTTTCGATCCGCCTGCTTGCGCTGCAATGTTTCCGG
CGACATCCAAGCCGGTTGATAGATGCGTCCCTTCTCTTGGAAAGAGAATT
TGGCATCGCCCATGTTGATTCTCGCCGTCAGATCATCGTCGATCATCACG
TGATGACTGTTCAGGTGATATGTTGGAATAATGCGCTCCAGCGAGTGCAG
GAAAGCCATTCCTCTCGCAACATCCAAGGCAAAGCTTACCGCCTGGCTGG
TGTCCACCACGACGCCAGTTGCTCCATGCAGCAGGCTAAACAGCGAAGAA
CGTGGCATAAACTGACTAATTGTCACCAGATTGGGTGGCGAATTGCATGC
TCCAATAATAGGCAAAATGTTAGGGTGCGAAAAGATGCGGAGCTTGGGAA
ACTCCTCGTTAAAATCTCGCGATATACGAGGCGTGCACTGACGCACGGCC
AGGATCTTAGCTACCACATCGTTCTTTTGCCAGCGTCCGCGCCAAGTTTC
TCCTGATGGCGTCACCGACAGCTTGGTATGCAGGTCTAGGTCTCCCATAC
TGATTCCCCTTGAACGGGACAAAGTAGCATCCCGGGATCTCGTC

BO07240.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG10504-PA 1347 Ilk-RA 555..1344 808..19 3950 100 Minus
CG10504-PA 1347 Ilk-RA 519..550 844..813 160 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:20:22
Subject Length Description Subject Range Query Range Score Percent Strand
Ilk-RA 1806 CG10504-RA 682..1507 844..19 4085 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21218397..21218941 563..19 2725 100 Minus
3L 28110227 3L 21218054..21218336 844..562 1370 98.9 Minus
Blast to na_te.dros performed on 2015-02-13 16:20:21 has no hits.

BO07240.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:15 Download gff for BO07240.3prime
Subject Subject Range Query Range Percent Splice Strand
Ilk-PA 519..1347 16..844 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:36 Download gff for BO07240.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10504-PA 519..1347 16..844 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:10:54 Download gff for BO07240.3prime
Subject Subject Range Query Range Percent Splice Strand
Ilk-RA 682..1512 14..844 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:38:11 Download gff for BO07240.3prime
Subject Subject Range Query Range Percent Splice Strand
Ilk-RA 682..1512 14..844 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:38:11 Download gff for BO07240.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21218054..21218336 562..844 99 -> Minus
3L 21218399..21218946 14..561 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:10:54 Download gff for BO07240.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21211154..21211436 562..844 99 -> Minus
arm_3L 21211499..21212046 14..561 99   Minus

BO07240.5prime Sequence

913 bp (874 high quality bases) assembled on 2005-12-04

> BO07240.5prime
GAAGTTATCAGTCGACATGGAGGACATATTCCACTGGTGCCGCGAGGGCA
ACTCGATTCAAGTGCGCCTCTGGTTGGATGAAACGGAGCACGACAACAAT
TTGGGAGACGACCATGGCTTCAGCCCGTTGCATTGGGTGGCTAAAGAGGG
CCACGCCAAGCTTGTGGAGACTCTGTTGCAGCGCGGTTCGCGTGTGAACG
CCACCAATATGGGCGACGACATCCCACTCCATTTAGCGGCAGCTCATGGC
CACCGCGACGTGGTCCAGATGTTGATAAAAGAGCGCAGCGATGTGAATGC
GGTAAACGAGCATGGAAACACCCCCCTGCACTACGCCTGTTTTTGGGGCT
ATGACATGATCTGCGAGGATCTGCTTAATGCGGGAGCCCAGGTGGGAATC
GCAAACAAGGACGGGCACACACCTCTTGAAAAGGCCAAACCCAGTCTGGC
CAAGAGGCTTCAGGATCTTGTAGAAAAGAGCGGCAGAGAGGTTAAGGTTA
TCAGCTTCAAGGAACAAAGCTGGCAGGGATTGAAGACGAGATCCCGGGAT
GCTACTTTGTCCCGTTTCAAGGGAATCAGTATGGGAGACCTAGACCTGCA
TACCAAGCTGTCGGTGACGCCATCAGGAGAAACTTGGCGCGGACGCTGGC
AAAAGAACGATGTGGTAGCTAAGATCCTGGCCGTGCGTCAGTGCACGCCT
CGTATATCGCGAGATTTTAACGAGGAGTTTCCCAAGCTCCGCATCTTTTC
GCACCCTAACATTTTGCCTATTATTGGAGCATGCAATTCGCCACCCAATC
TGGTGACAATTAGTCAGTTTATGCCACGTTCTTCGCTGTTTAGCCTGCTG
CATGGAGCAACTGGCGTCGTGGTGGACACCAGCCAGGCGGTAAGCTTTGC
CTTTGGATGTGCG

BO07240.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG10504-PA 1347 Ilk-RA 1..887 17..903 4435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
Ilk-RA 1806 CG10504-RA 164..1056 17..910 4445 99.9 Plus
Ilk-RB 671 CG10504-RB 164..252 17..105 445 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:57:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21217790..21218336 271..817 2735 100 Plus
3L 28110227 3L 21217566..21217736 105..275 840 99.4 Plus
3L 28110227 3L 21217064..21217152 17..105 445 100 Plus
3L 28110227 3L 21218397..21218484 816..903 440 100 Plus
Blast to na_te.dros performed on 2015-02-12 09:57:19 has no hits.

BO07240.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:15 Download gff for BO07240.5prime
Subject Subject Range Query Range Percent Splice Strand
Ilk-PA 1..897 17..913 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:38 Download gff for BO07240.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10504-PA 1..897 17..913 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:44:13 Download gff for BO07240.5prime
Subject Subject Range Query Range Percent Splice Strand
Ilk-RA 157..1060 10..913 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:56:13 Download gff for BO07240.5prime
Subject Subject Range Query Range Percent Splice Strand
Ilk-RA 157..1060 10..913 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:56:13 Download gff for BO07240.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21217057..21217152 10..105 96 -> Plus
3L 21217567..21217732 106..271 100 -> Plus
3L 21217791..21218336 272..817 100 -> Plus
3L 21218399..21218494 818..913 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:44:13 Download gff for BO07240.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21210157..21210252 10..105 96 -> Plus
arm_3L 21210667..21210832 106..271 100 -> Plus
arm_3L 21210891..21211436 272..817 100 -> Plus
arm_3L 21211499..21211594 818..913 97   Plus

BO07240.complete Sequence

1378 bp (1378 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630718

> BO07240.complete
GAAGTTATCAGTCGACATGGAGGACATATTCCACTGGTGCCGCGAGGGCA
ACTCGATTCAAGTGCGCCTCTGGTTGGATGAAACGGAGCACGACAACAAT
TTGGGAGACGACCATGGCTTCAGCCCGTTGCATTGGGTGGCTAAAGAGGG
CCACGCCAAGCTTGTGGAGACTCTGTTGCAGCGCGGTTCGCGTGTGAACG
CCACCAATATGGGCGACGACATCCCACTCCATTTAGCGGCAGCTCATGGC
CACCGCGACGTGGTCCAGATGTTGATAAAAGAGCGCAGCGATGTGAATGC
GGTAAACGAGCATGGAAACACCCCCCTGCACTACGCCTGTTTTTGGGGCT
ATGACATGATCTGCGAGGATCTGCTTAATGCGGGAGCCCAGGTGGGAATC
GCAAACAAGGACGGGCACACACCTCTTGAAAAGGCCAAACCCAGTCTGGC
CAAGAGGCTTCAGGATCTTGTAGAAAAGAGCGGCAGAGAGGTTAAGGTTA
TCAGCTTCAAGGAACAAAGCTGGCAGGGATTGAAGACGAGATCCCGGGAT
GCTACTTTGTCCCGTTTCAAGGGAATCAGTATGGGAGACCTAGACCTGCA
TACCAAGCTGTCGGTGACGCCATCAGGAGAAACTTGGCGCGGACGCTGGC
AAAAGAACGATGTGGTAGCTAAGATCCTGGCCGTGCGTCAGTGCACGCCT
CGTATATCGCGAGATTTTAACGAGGAGTTTCCCAAGCTCCGCATCTTTTC
GCACCCTAACATTTTGCCTATTATTGGAGCATGCAATTCGCCACCCAATC
TGGTGACAATTAGTCAGTTTATGCCACGTTCTTCGCTGTTTAGCCTGCTG
CATGGAGCAACTGGCGTCGTGGTGGACACCAGCCAGGCGGTAAGCTTTGC
CTTGGATGTTGCGAGAGGAATGGCTTTCCTGCACTCGCTGGAGCGCATTA
TTCCAACATATCACCTGAACAGTCATCACGTGATGATCGACGATGATCTG
ACGGCGAGAATCAACATGGGCGATGCCAAATTCTCTTTCCAAGAGAAGGG
ACGCATCTATCAACCGGCTTGGATGTCGCCGGAAACATTGCAGCGCAAGC
AGGCGGATCGAAACTGGGAGGCCTGTGACATGTGGAGCTTTGCTATTCTT
ATTTGGGAGCTGACTACGCGCGAGGTACCCTTCGCCGAGTGGTCGCCCAT
GGAGTGCGGCATGAAAATTGCGTTGGAAGGTCTGCGGGTCAAGATTCCGC
CAGGCACATCGACGCACATGGCCAAGCTGATTTCAATCTGCATGAACGAG
GATCCCGGCAAGCGGCCCAAGTTCGACATGGTGGTTCCCATTCTGGAGAA
GATGCGCCGCGCAAGCTTTCTAGACCAT

BO07240.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
Ilk-RA 1347 CG10504-PA 1..1344 17..1360 6720 100 Plus
Ilk-RB 93 CG10504-PB 1..89 17..105 445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:29:11
Subject Length Description Subject Range Query Range Score Percent Strand
Ilk-RA 1806 CG10504-RA 164..1507 17..1360 6720 100 Plus
Ilk-RB 671 CG10504-RB 164..252 17..105 445 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:29:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21217790..21218336 271..817 2735 100 Plus
3L 28110227 3L 21218397..21218941 816..1360 2725 100 Plus
3L 28110227 3L 21217566..21217736 105..275 840 99.4 Plus
3L 28110227 3L 21217064..21217152 17..105 445 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:29:08 has no hits.

BO07240.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:29 Download gff for BO07240.complete
Subject Subject Range Query Range Percent Splice Strand
Ilk-RA 1..1347 17..1363 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:41 Download gff for BO07240.complete
Subject Subject Range Query Range Percent Splice Strand
Ilk-RA 164..1519 10..1365 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:30 Download gff for BO07240.complete
Subject Subject Range Query Range Percent Splice Strand
Ilk-RA 164..1507 17..1362 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:29 Download gff for BO07240.complete
Subject Subject Range Query Range Percent Splice Strand
Ilk-RA 164..1519 10..1365 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:43 Download gff for BO07240.complete
Subject Subject Range Query Range Percent Splice Strand
Ilk-RA 164..1507 17..1362 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:43 Download gff for BO07240.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21217064..21217152 17..105 100 -> Plus
3L 21217567..21217732 106..271 100 -> Plus
3L 21217791..21218336 272..817 100 -> Plus
3L 21218399..21218941 818..1362 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:30 Download gff for BO07240.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21210164..21210252 17..105 100 -> Plus
arm_3L 21210667..21210832 106..271 100 -> Plus
arm_3L 21210891..21211436 272..817 100 -> Plus
arm_3L 21211499..21212041 818..1362 99   Plus

BO07240.pep Sequence

Translation from 16 to 1378

> BO07240.pep
MEDIFHWCREGNSIQVRLWLDETEHDNNLGDDHGFSPLHWVAKEGHAKLV
ETLLQRGSRVNATNMGDDIPLHLAAAHGHRDVVQMLIKERSDVNAVNEHG
NTPLHYACFWGYDMICEDLLNAGAQVGIANKDGHTPLEKAKPSLAKRLQD
LVEKSGREVKVISFKEQSWQGLKTRSRDATLSRFKGISMGDLDLHTKLSV
TPSGETWRGRWQKNDVVAKILAVRQCTPRISRDFNEEFPKLRIFSHPNIL
PIIGACNSPPNLVTISQFMPRSSLFSLLHGATGVVVDTSQAVSFALDVAR
GMAFLHSLERIIPTYHLNSHHVMIDDDLTARINMGDAKFSFQEKGRIYQP
AWMSPETLQRKQADRNWEACDMWSFAILIWELTTREVPFAEWSPMECGMK
IALEGLRVKIPPGTSTHMAKLISICMNEDPGKRPKFDMVVPILEKMRRAS
FLDH

BO07240.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:15
Subject Length Description Subject Range Query Range Score Percent Strand
Ilk-PA 448 CG10504-PA 1..448 1..448 2391 100 Plus
Takl1-PA 393 CG31421-PA 3..266 185..443 212 25 Plus
Tnks-PA 1181 CG4719-PA 648..826 9..188 211 33.5 Plus
Tnks-PB 1520 CG4719-PB 648..826 9..188 211 33.5 Plus
Abl-PH 1504 CG4032-PH 370..629 191..450 208 24.3 Plus
Tnks-PA 1181 CG4719-PA 24..194 1..163 184 32.4 Plus
Tnks-PB 1520 CG4719-PB 24..194 1..163 184 32.4 Plus
Tnks-PA 1181 CG4719-PA 517..629 31..143 181 37.2 Plus
Tnks-PB 1520 CG4719-PB 517..629 31..143 181 37.2 Plus
Tnks-PA 1181 CG4719-PA 178..316 2..140 156 29.5 Plus