Clone Sequence Records
BO07240.3prime Sequence
844 bp (803 high quality bases) assembled on 2005-12-04
> BO07240.3prime
ATGGTCTAGAAAGCTTGCGCGGCGCATCTTCTCCAGAATGGGAACCACCA
TGTCGAACTTGGGCCGCTTGCCGGGATCCTCGTTCATGCAGATTGAAATC
AGCTTGGCCATGTGCGTCGATGTGCCTGGCGGAATCTTGACCCGCAGACC
TTCCAACGCAATTTTCATGCCGCACTCCATGGGCGACCACTCGGCGAAGG
GTACCTCGCGCGTAGTCAGCTCCCAAATAAGAATAGCAAAGCTCCACATG
TCACAGGCCTCCCAGTTTCGATCCGCCTGCTTGCGCTGCAATGTTTCCGG
CGACATCCAAGCCGGTTGATAGATGCGTCCCTTCTCTTGGAAAGAGAATT
TGGCATCGCCCATGTTGATTCTCGCCGTCAGATCATCGTCGATCATCACG
TGATGACTGTTCAGGTGATATGTTGGAATAATGCGCTCCAGCGAGTGCAG
GAAAGCCATTCCTCTCGCAACATCCAAGGCAAAGCTTACCGCCTGGCTGG
TGTCCACCACGACGCCAGTTGCTCCATGCAGCAGGCTAAACAGCGAAGAA
CGTGGCATAAACTGACTAATTGTCACCAGATTGGGTGGCGAATTGCATGC
TCCAATAATAGGCAAAATGTTAGGGTGCGAAAAGATGCGGAGCTTGGGAA
ACTCCTCGTTAAAATCTCGCGATATACGAGGCGTGCACTGACGCACGGCC
AGGATCTTAGCTACCACATCGTTCTTTTGCCAGCGTCCGCGCCAAGTTTC
TCCTGATGGCGTCACCGACAGCTTGGTATGCAGGTCTAGGTCTCCCATAC
TGATTCCCCTTGAACGGGACAAAGTAGCATCCCGGGATCTCGTC
BO07240.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10504-PA | 1347 | Ilk-RA | 555..1344 | 808..19 | 3950 | 100 | Minus |
CG10504-PA | 1347 | Ilk-RA | 519..550 | 844..813 | 160 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:20:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ilk-RA | 1806 | CG10504-RA | 682..1507 | 844..19 | 4085 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:20:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21218397..21218941 | 563..19 | 2725 | 100 | Minus |
3L | 28110227 | 3L | 21218054..21218336 | 844..562 | 1370 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:20:21 has no hits.
BO07240.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:15 Download gff for
BO07240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ilk-PA | 519..1347 | 16..844 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:36 Download gff for
BO07240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10504-PA | 519..1347 | 16..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:10:54 Download gff for
BO07240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ilk-RA | 682..1512 | 14..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:38:11 Download gff for
BO07240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ilk-RA | 682..1512 | 14..844 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:38:11 Download gff for
BO07240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21218054..21218336 | 562..844 | 99 | -> | Minus |
3L | 21218399..21218946 | 14..561 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:10:54 Download gff for
BO07240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21211154..21211436 | 562..844 | 99 | -> | Minus |
arm_3L | 21211499..21212046 | 14..561 | 99 | | Minus |
BO07240.5prime Sequence
913 bp (874 high quality bases) assembled on 2005-12-04
> BO07240.5prime
GAAGTTATCAGTCGACATGGAGGACATATTCCACTGGTGCCGCGAGGGCA
ACTCGATTCAAGTGCGCCTCTGGTTGGATGAAACGGAGCACGACAACAAT
TTGGGAGACGACCATGGCTTCAGCCCGTTGCATTGGGTGGCTAAAGAGGG
CCACGCCAAGCTTGTGGAGACTCTGTTGCAGCGCGGTTCGCGTGTGAACG
CCACCAATATGGGCGACGACATCCCACTCCATTTAGCGGCAGCTCATGGC
CACCGCGACGTGGTCCAGATGTTGATAAAAGAGCGCAGCGATGTGAATGC
GGTAAACGAGCATGGAAACACCCCCCTGCACTACGCCTGTTTTTGGGGCT
ATGACATGATCTGCGAGGATCTGCTTAATGCGGGAGCCCAGGTGGGAATC
GCAAACAAGGACGGGCACACACCTCTTGAAAAGGCCAAACCCAGTCTGGC
CAAGAGGCTTCAGGATCTTGTAGAAAAGAGCGGCAGAGAGGTTAAGGTTA
TCAGCTTCAAGGAACAAAGCTGGCAGGGATTGAAGACGAGATCCCGGGAT
GCTACTTTGTCCCGTTTCAAGGGAATCAGTATGGGAGACCTAGACCTGCA
TACCAAGCTGTCGGTGACGCCATCAGGAGAAACTTGGCGCGGACGCTGGC
AAAAGAACGATGTGGTAGCTAAGATCCTGGCCGTGCGTCAGTGCACGCCT
CGTATATCGCGAGATTTTAACGAGGAGTTTCCCAAGCTCCGCATCTTTTC
GCACCCTAACATTTTGCCTATTATTGGAGCATGCAATTCGCCACCCAATC
TGGTGACAATTAGTCAGTTTATGCCACGTTCTTCGCTGTTTAGCCTGCTG
CATGGAGCAACTGGCGTCGTGGTGGACACCAGCCAGGCGGTAAGCTTTGC
CTTTGGATGTGCG
BO07240.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10504-PA | 1347 | Ilk-RA | 1..887 | 17..903 | 4435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:57:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ilk-RA | 1806 | CG10504-RA | 164..1056 | 17..910 | 4445 | 99.9 | Plus |
Ilk-RB | 671 | CG10504-RB | 164..252 | 17..105 | 445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:57:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21217790..21218336 | 271..817 | 2735 | 100 | Plus |
3L | 28110227 | 3L | 21217566..21217736 | 105..275 | 840 | 99.4 | Plus |
3L | 28110227 | 3L | 21217064..21217152 | 17..105 | 445 | 100 | Plus |
3L | 28110227 | 3L | 21218397..21218484 | 816..903 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 09:57:19 has no hits.
BO07240.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:15 Download gff for
BO07240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ilk-PA | 1..897 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:38 Download gff for
BO07240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10504-PA | 1..897 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:44:13 Download gff for
BO07240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ilk-RA | 157..1060 | 10..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:56:13 Download gff for
BO07240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ilk-RA | 157..1060 | 10..913 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:56:13 Download gff for
BO07240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21217057..21217152 | 10..105 | 96 | -> | Plus |
3L | 21217567..21217732 | 106..271 | 100 | -> | Plus |
3L | 21217791..21218336 | 272..817 | 100 | -> | Plus |
3L | 21218399..21218494 | 818..913 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:44:13 Download gff for
BO07240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21210157..21210252 | 10..105 | 96 | -> | Plus |
arm_3L | 21210667..21210832 | 106..271 | 100 | -> | Plus |
arm_3L | 21210891..21211436 | 272..817 | 100 | -> | Plus |
arm_3L | 21211499..21211594 | 818..913 | 97 | | Plus |
BO07240.complete Sequence
1378 bp (1378 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630718
> BO07240.complete
GAAGTTATCAGTCGACATGGAGGACATATTCCACTGGTGCCGCGAGGGCA
ACTCGATTCAAGTGCGCCTCTGGTTGGATGAAACGGAGCACGACAACAAT
TTGGGAGACGACCATGGCTTCAGCCCGTTGCATTGGGTGGCTAAAGAGGG
CCACGCCAAGCTTGTGGAGACTCTGTTGCAGCGCGGTTCGCGTGTGAACG
CCACCAATATGGGCGACGACATCCCACTCCATTTAGCGGCAGCTCATGGC
CACCGCGACGTGGTCCAGATGTTGATAAAAGAGCGCAGCGATGTGAATGC
GGTAAACGAGCATGGAAACACCCCCCTGCACTACGCCTGTTTTTGGGGCT
ATGACATGATCTGCGAGGATCTGCTTAATGCGGGAGCCCAGGTGGGAATC
GCAAACAAGGACGGGCACACACCTCTTGAAAAGGCCAAACCCAGTCTGGC
CAAGAGGCTTCAGGATCTTGTAGAAAAGAGCGGCAGAGAGGTTAAGGTTA
TCAGCTTCAAGGAACAAAGCTGGCAGGGATTGAAGACGAGATCCCGGGAT
GCTACTTTGTCCCGTTTCAAGGGAATCAGTATGGGAGACCTAGACCTGCA
TACCAAGCTGTCGGTGACGCCATCAGGAGAAACTTGGCGCGGACGCTGGC
AAAAGAACGATGTGGTAGCTAAGATCCTGGCCGTGCGTCAGTGCACGCCT
CGTATATCGCGAGATTTTAACGAGGAGTTTCCCAAGCTCCGCATCTTTTC
GCACCCTAACATTTTGCCTATTATTGGAGCATGCAATTCGCCACCCAATC
TGGTGACAATTAGTCAGTTTATGCCACGTTCTTCGCTGTTTAGCCTGCTG
CATGGAGCAACTGGCGTCGTGGTGGACACCAGCCAGGCGGTAAGCTTTGC
CTTGGATGTTGCGAGAGGAATGGCTTTCCTGCACTCGCTGGAGCGCATTA
TTCCAACATATCACCTGAACAGTCATCACGTGATGATCGACGATGATCTG
ACGGCGAGAATCAACATGGGCGATGCCAAATTCTCTTTCCAAGAGAAGGG
ACGCATCTATCAACCGGCTTGGATGTCGCCGGAAACATTGCAGCGCAAGC
AGGCGGATCGAAACTGGGAGGCCTGTGACATGTGGAGCTTTGCTATTCTT
ATTTGGGAGCTGACTACGCGCGAGGTACCCTTCGCCGAGTGGTCGCCCAT
GGAGTGCGGCATGAAAATTGCGTTGGAAGGTCTGCGGGTCAAGATTCCGC
CAGGCACATCGACGCACATGGCCAAGCTGATTTCAATCTGCATGAACGAG
GATCCCGGCAAGCGGCCCAAGTTCGACATGGTGGTTCCCATTCTGGAGAA
GATGCGCCGCGCAAGCTTTCTAGACCAT
BO07240.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:29:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ilk-RA | 1347 | CG10504-PA | 1..1344 | 17..1360 | 6720 | 100 | Plus |
Ilk-RB | 93 | CG10504-PB | 1..89 | 17..105 | 445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:29:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ilk-RA | 1806 | CG10504-RA | 164..1507 | 17..1360 | 6720 | 100 | Plus |
Ilk-RB | 671 | CG10504-RB | 164..252 | 17..105 | 445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:29:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21217790..21218336 | 271..817 | 2735 | 100 | Plus |
3L | 28110227 | 3L | 21218397..21218941 | 816..1360 | 2725 | 100 | Plus |
3L | 28110227 | 3L | 21217566..21217736 | 105..275 | 840 | 99.4 | Plus |
3L | 28110227 | 3L | 21217064..21217152 | 17..105 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:29:08 has no hits.
BO07240.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:29 Download gff for
BO07240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ilk-RA | 1..1347 | 17..1363 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:41 Download gff for
BO07240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ilk-RA | 164..1519 | 10..1365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:30 Download gff for
BO07240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ilk-RA | 164..1507 | 17..1362 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:29 Download gff for
BO07240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ilk-RA | 164..1519 | 10..1365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:43 Download gff for
BO07240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ilk-RA | 164..1507 | 17..1362 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:43 Download gff for
BO07240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21217064..21217152 | 17..105 | 100 | -> | Plus |
3L | 21217567..21217732 | 106..271 | 100 | -> | Plus |
3L | 21217791..21218336 | 272..817 | 100 | -> | Plus |
3L | 21218399..21218941 | 818..1362 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:30 Download gff for
BO07240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21210164..21210252 | 17..105 | 100 | -> | Plus |
arm_3L | 21210667..21210832 | 106..271 | 100 | -> | Plus |
arm_3L | 21210891..21211436 | 272..817 | 100 | -> | Plus |
arm_3L | 21211499..21212041 | 818..1362 | 99 | | Plus |
BO07240.pep Sequence
Translation from 16 to 1378
> BO07240.pep
MEDIFHWCREGNSIQVRLWLDETEHDNNLGDDHGFSPLHWVAKEGHAKLV
ETLLQRGSRVNATNMGDDIPLHLAAAHGHRDVVQMLIKERSDVNAVNEHG
NTPLHYACFWGYDMICEDLLNAGAQVGIANKDGHTPLEKAKPSLAKRLQD
LVEKSGREVKVISFKEQSWQGLKTRSRDATLSRFKGISMGDLDLHTKLSV
TPSGETWRGRWQKNDVVAKILAVRQCTPRISRDFNEEFPKLRIFSHPNIL
PIIGACNSPPNLVTISQFMPRSSLFSLLHGATGVVVDTSQAVSFALDVAR
GMAFLHSLERIIPTYHLNSHHVMIDDDLTARINMGDAKFSFQEKGRIYQP
AWMSPETLQRKQADRNWEACDMWSFAILIWELTTREVPFAEWSPMECGMK
IALEGLRVKIPPGTSTHMAKLISICMNEDPGKRPKFDMVVPILEKMRRAS
FLDH
BO07240.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ilk-PA | 448 | CG10504-PA | 1..448 | 1..448 | 2391 | 100 | Plus |
Takl1-PA | 393 | CG31421-PA | 3..266 | 185..443 | 212 | 25 | Plus |
Tnks-PA | 1181 | CG4719-PA | 648..826 | 9..188 | 211 | 33.5 | Plus |
Tnks-PB | 1520 | CG4719-PB | 648..826 | 9..188 | 211 | 33.5 | Plus |
Abl-PH | 1504 | CG4032-PH | 370..629 | 191..450 | 208 | 24.3 | Plus |
Tnks-PA | 1181 | CG4719-PA | 24..194 | 1..163 | 184 | 32.4 | Plus |
Tnks-PB | 1520 | CG4719-PB | 24..194 | 1..163 | 184 | 32.4 | Plus |
Tnks-PA | 1181 | CG4719-PA | 517..629 | 31..143 | 181 | 37.2 | Plus |
Tnks-PB | 1520 | CG4719-PB | 517..629 | 31..143 | 181 | 37.2 | Plus |
Tnks-PA | 1181 | CG4719-PA | 178..316 | 2..140 | 156 | 29.5 | Plus |