Clone BO07244 Report

Search the DGRC for BO07244

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:72
Well:44
Vector:pDNR-Dual
Associated Gene/Transcriptprtp-RA
Protein status:BO07244.pep: validated full length
Sequenced Size:1282

Clone Sequence Records

BO07244.3prime Sequence

927 bp (900 high quality bases) assembled on 2005-12-04

> BO07244.3prime
ATGGTCTAGAAAGCTTGCGAGCTCGTCGTGGCCGAGGAACTTCTTCAGAT
AGGCCTGCAGCTCCGGCAGTGAGCGGCTGCCTTCGTACTCGTTCTGGCGC
TGACCATTCTTGTAAAGGAAGAGAGTTGGATAGCCCTCCACCTGCTGGTC
GATGCACACTTGCTTGTTCTCCGGCGCCGTGCAGTCAACCTTGGCAATTT
TCACGGAACTCTGAGCCTGGTGCGTTTCCGTGGCCAGCTGCTCCCAGGTG
GGTTGCAGCTTCTGGCAGTGTCCACACCACGGAGCATAGAACTTAATGAA
GGCAACGCCCTCGGCAATGGCTTGGTCGAACTCGTCCTCGCCAGTCAGCT
GTTGTGGAGTCAGCTTCTTGGCTGCGTCCTCCTCGCCGGCAACCTCCTCG
ATAACCACCTTCTCATCGCCGGCCTCGCCAGCGGTCTTCTCCAGTGGCAC
GCCCACCATTTTCTCCACGTACGTTTTCAGCGTGGACAGATCGCGAGCAC
CCGAGTACTTTTCAATCTTTTTGCCATCCTCGATCCAGAGAAGAGTGGGA
TACCCCTTGACCTCAAAGTCCTGGCAGATGGAACGGAACTGGGTGCAGTC
GATCTTCGAGATAGTTACGGTAGGCTCTTTAATCAGCTCCTTGGCCAGGT
CCTCCCACGTGGGTGCCAAACGCTGACAATGACTGCACCAGGGTGCAAAG
AATTTGACAAAGTGATTGCCGGTGGACACGTGCTTGGCAAAGGTGTCTTC
GGTAAGGTCAACCACCTTGCCAATATTAAGGTTCTCGACCTGCTCGCGCT
TGACCTCGCCCAGATCCGCCTCAGCGGGTGCGCTCAGTTCCTTATTGATG
AAATCGGTAATGGCGGGCAAGTCGCGAGTGCCCTTAAACTTGACCGATTC
CCTCTCGCCCAGCTTAAAGAGGCGCAG

BO07244.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG1837-PA 1251 CG1837-RA 366..1248 901..19 4415 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:20:35
Subject Length Description Subject Range Query Range Score Percent Strand
prtp-RC 1740 CG1837-RC 423..1331 927..19 4500 99.8 Minus
prtp-RB 1746 CG1837-RB 429..1337 927..19 4500 99.8 Minus
prtp-RD 1964 CG1837-RD 647..1555 927..19 4500 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:20:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11718829..11719485 675..19 3285 100 Minus
X 23542271 X 11718516..11718770 927..673 1230 98.8 Minus
Blast to na_te.dros performed on 2015-02-13 16:20:34 has no hits.

BO07244.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:18 Download gff for BO07244.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1837-PA 340..1251 15..927 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:42 Download gff for BO07244.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1837-PA 340..1251 15..927 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:10:56 Download gff for BO07244.3prime
Subject Subject Range Query Range Percent Splice Strand
prtp-RD 647..1565 8..927 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:38:49 Download gff for BO07244.3prime
Subject Subject Range Query Range Percent Splice Strand
prtp-RD 647..1565 8..927 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:38:49 Download gff for BO07244.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11718516..11718770 673..927 99 -> Minus
X 11718832..11719495 8..672 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:10:56 Download gff for BO07244.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11612549..11612803 673..927 99 -> Minus
arm_X 11612865..11613528 8..672 99   Minus

BO07244.5prime Sequence

893 bp (759 high quality bases) assembled on 2005-12-04

> BO07244.5prime
GAAGTTATCAGTCGACATGTTGACCAGGTCCATTTTATCCGTTGCCGTGT
GTGGCCTCCTCCTGTCGCCCCTCCTGCCCATCACCCGTGCGTCCCAGGAG
GAGGACACCGGCAAACAGGACAAGCAGTTCACCGTGGAACTGGACCCAGA
AACCTTCGACACTGCGATTGCCGGCGGCAATGTCTTCGTCAAGTTCTTTG
CTCCATGGTGCGGCCATTGCAAGCGTATTCAGCCGCTGTGGGAACAGCTG
GCCGAGATCATGAATGTGGATAACCCCAAGGTGATCATCGCCAAGGTGGA
CTGCACCAAGCACCAGGGACTCTGCGCCACGCACCAGGTTACCGGCTATC
CCACACTGCGCCTCTTTAAGCTGGGCGAAGAGGAATCGGTCAAGTTTAAG
GGCACTCGCGACTTGCCCGCCATTACCGATTTCATCAATAAGGAACTGAG
CGCACCCGCTGAGGCGGATCTGGGCGAGGTCAAGCGCGAGCAGGTCGAGA
ACCTTAATATTGGCAAGGTGGTTGACCTTACCGAAGACACCTTTGCCAAG
CACGTGTCCACCGGCAATCACTTTGTCAAATTCTTTGCACCCTGGTGCAG
TCATTGTCAGCGTTTGGCACCCACGTGGGAGGACCTGGCCAAGGAGCTGA
TTAAAGAGCCTACCGTAACTATCTCGAAGATCGACTGCACCCAGTTCCGT
TCCATCTGCCAGGACTTTGAGGTCAAGGGGTATCCCACTCTTCTCTGGAT
CGAGGATGGCAAAAAGATTGAAAAGTACTCGGGTGCTCGCGATCTGTCCA
CGCTGAAAACGTACGTGGAGAAAATGGTGGGCGTGCCACTGGAGAAGACC
GCTGGCGAGGCCGGCGATGAGAAGGTGGTTATCGAGGAGGTTG

BO07244.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG1837-PA 1251 CG1837-RA 1..877 17..893 4385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:20:26
Subject Length Description Subject Range Query Range Score Percent Strand
prtp-RC 1740 CG1837-RC 83..960 16..893 4390 100 Plus
prtp-RB 1746 CG1837-RB 89..966 16..893 4390 100 Plus
prtp-RA 1763 CG1837-RA 106..983 16..893 4390 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11718367..11718770 207..610 2020 100 Plus
X 23542271 X 11718829..11719114 608..893 1430 100 Plus
X 23542271 X 11717073..11717267 16..210 975 100 Plus
Blast to na_te.dros performed on 2015-02-04 20:20:23 has no hits.

BO07244.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:20 Download gff for BO07244.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1837-PA 1..877 17..893 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:43 Download gff for BO07244.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1837-PA 1..877 17..893 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:24:37 Download gff for BO07244.5prime
Subject Subject Range Query Range Percent Splice Strand
prtp-RA 97..983 8..893 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:48:35 Download gff for BO07244.5prime
Subject Subject Range Query Range Percent Splice Strand
prtp-RA 97..983 8..893 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:48:35 Download gff for BO07244.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11717064..11717264 8..207 98 -> Plus
X 11718368..11718770 208..610 100 -> Plus
X 11718832..11719114 611..893 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:24:37 Download gff for BO07244.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11611097..11611297 8..207 98 -> Plus
arm_X 11612401..11612803 208..610 100 -> Plus
arm_X 11612865..11613147 611..893 100   Plus

BO07244.complete Sequence

1282 bp (1282 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630719

> BO07244.complete
GAAGTTATCAGTCGACATGTTGACCAGGTCCATTTTATCCGTTGCCGTGT
GTGGCCTCCTCCTGTCGCCCCTCCTGCCCATCACCCGTGCGTCCCAGGAG
GAGGACACCGGCAAACAGGACAAGCAGTTCACCGTGGAACTGGACCCAGA
AACCTTCGACACTGCGATTGCCGGCGGCAATGTCTTCGTCAAGTTCTTTG
CTCCATGGTGCGGCCATTGCAAGCGTATTCAGCCGCTGTGGGAACAGCTG
GCCGAGATCATGAATGTGGATAACCCCAAGGTGATCATCGCCAAGGTGGA
CTGCACCAAGCACCAGGGACTCTGCGCCACGCACCAGGTTACCGGCTATC
CCACACTGCGCCTCTTTAAGCTGGGCGAAGAGGAATCGGTCAAGTTTAAG
GGCACTCGCGACTTGCCCGCCATTACCGATTTCATCAATAAGGAACTGAG
CGCACCCGCTGAGGCGGATCTGGGCGAGGTCAAGCGCGAGCAGGTCGAGA
ACCTTAATATTGGCAAGGTGGTTGACCTTACCGAAGACACCTTTGCCAAG
CACGTGTCCACCGGCAATCACTTTGTCAAATTCTTTGCACCCTGGTGCAG
TCATTGTCAGCGTTTGGCACCCACGTGGGAGGACCTGGCCAAGGAGCTGA
TTAAAGAGCCTACCGTAACTATCTCGAAGATCGACTGCACCCAGTTCCGT
TCCATCTGCCAGGACTTTGAGGTCAAGGGGTATCCCACTCTTCTCTGGAT
CGAGGATGGCAAAAAGATTGAAAAGTACTCGGGTGCTCGCGATCTGTCCA
CGCTGAAAACGTACGTGGAGAAAATGGTGGGCGTGCCACTGGAGAAGACC
GCTGGCGAGGCCGGCGATGAGAAGGTGGTTATCGAGGAGGTTGCCGGCGA
GGAGGACGCAGCCAAGAAGCTGACTCCACAACAGCTGACTGGCGAGGACG
AGTTCGACCAAGCCATTGCCGAGGGCGTTGCCTTCATTAAGTTCTATGCT
CCGTGGTGTGGACACTGCCAGAAGCTGCAACCCACCTGGGAGCAGCTGGC
CACGGAAACGCACCAGGCTCAGAGTTCCGTGAAAATTGCCAAGGTTGACT
GCACGGCGCCGGAGAACAAGCAAGTGTGCATCGACCAGCAGGTGGAGGGC
TATCCAACTCTCTTCCTTTACAAGAATGGTCAGCGCCAGAACGAGTACGA
AGGCAGCCGCTCACTGCCGGAGCTGCAGGCCTATCTGAAGAAGTTCCTCG
GCCACGACGAGCTCGCAAGCTTTCTAGACCAT

BO07244.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:00:13
Subject Length Description Subject Range Query Range Score Percent Strand
prtp-RC 1251 CG1837-PC 1..1248 17..1264 6240 100 Plus
prtp-RB 1251 CG1837-PB 1..1248 17..1264 6240 100 Plus
prtp-RA 1251 CG1837-PA 1..1248 17..1264 6240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:00:14
Subject Length Description Subject Range Query Range Score Percent Strand
prtp-RC 1740 CG1837-RC 83..1331 16..1264 6245 100 Plus
prtp-RB 1746 CG1837-RB 89..1337 16..1264 6245 100 Plus
prtp-RA 1763 CG1837-RA 106..1354 16..1264 6245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:00:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11718829..11719485 608..1264 3285 100 Plus
X 23542271 X 11718367..11718770 207..610 2020 100 Plus
X 23542271 X 11717073..11717267 16..210 975 100 Plus
Blast to na_te.dros performed on 2014-11-27 02:00:11 has no hits.

BO07244.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:30 Download gff for BO07244.complete
Subject Subject Range Query Range Percent Splice Strand
CG1837-RA 1..1251 17..1268 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:42 Download gff for BO07244.complete
Subject Subject Range Query Range Percent Splice Strand
CG1837-RA 97..1364 8..1275 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:03 Download gff for BO07244.complete
Subject Subject Range Query Range Percent Splice Strand
prtp-RA 112..1354 22..1266 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:30 Download gff for BO07244.complete
Subject Subject Range Query Range Percent Splice Strand
CG1837-RA 97..1364 8..1275 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:35:48 Download gff for BO07244.complete
Subject Subject Range Query Range Percent Splice Strand
prtp-RA 112..1354 22..1266 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:35:48 Download gff for BO07244.complete
Subject Subject Range Query Range Percent Splice Strand
X 11717079..11717264 22..207 100 -> Plus
X 11718368..11718770 208..610 100 -> Plus
X 11718832..11719485 611..1266 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:03 Download gff for BO07244.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11611112..11611297 22..207 100 -> Plus
arm_X 11612401..11612803 208..610 100 -> Plus
arm_X 11612865..11613518 611..1266 99   Plus

BO07244.pep Sequence

Translation from 16 to 1282

> BO07244.pep
MLTRSILSVAVCGLLLSPLLPITRASQEEDTGKQDKQFTVELDPETFDTA
IAGGNVFVKFFAPWCGHCKRIQPLWEQLAEIMNVDNPKVIIAKVDCTKHQ
GLCATHQVTGYPTLRLFKLGEEESVKFKGTRDLPAITDFINKELSAPAEA
DLGEVKREQVENLNIGKVVDLTEDTFAKHVSTGNHFVKFFAPWCSHCQRL
APTWEDLAKELIKEPTVTISKIDCTQFRSICQDFEVKGYPTLLWIEDGKK
IEKYSGARDLSTLKTYVEKMVGVPLEKTAGEAGDEKVVIEEVAGEEDAAK
KLTPQQLTGEDEFDQAIAEGVAFIKFYAPWCGHCQKLQPTWEQLATETHQ
AQSSVKIAKVDCTAPENKQVCIDQQVEGYPTLFLYKNGQRQNEYEGSRSL
PELQAYLKKFLGHDELASFLDH

BO07244.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:13
Subject Length Description Subject Range Query Range Score Percent Strand
prtp-PC 416 CG1837-PC 1..416 1..416 2202 100 Plus
prtp-PB 416 CG1837-PB 1..416 1..416 2202 100 Plus
prtp-PA 416 CG1837-PA 1..416 1..416 2202 100 Plus
prtp-PD 353 CG1837-PD 2..353 65..416 1875 100 Plus
prtp-PD 353 CG1837-PD 106..349 40..272 486 39 Plus
CG9302-PA 510 CG9302-PA 165..498 56..407 325 25.1 Plus
prtp-PD 353 CG1837-PD 226..348 22..144 260 44.1 Plus