Clone Sequence Records
BO07244.3prime Sequence
927 bp (900 high quality bases) assembled on 2005-12-04
> BO07244.3prime
ATGGTCTAGAAAGCTTGCGAGCTCGTCGTGGCCGAGGAACTTCTTCAGAT
AGGCCTGCAGCTCCGGCAGTGAGCGGCTGCCTTCGTACTCGTTCTGGCGC
TGACCATTCTTGTAAAGGAAGAGAGTTGGATAGCCCTCCACCTGCTGGTC
GATGCACACTTGCTTGTTCTCCGGCGCCGTGCAGTCAACCTTGGCAATTT
TCACGGAACTCTGAGCCTGGTGCGTTTCCGTGGCCAGCTGCTCCCAGGTG
GGTTGCAGCTTCTGGCAGTGTCCACACCACGGAGCATAGAACTTAATGAA
GGCAACGCCCTCGGCAATGGCTTGGTCGAACTCGTCCTCGCCAGTCAGCT
GTTGTGGAGTCAGCTTCTTGGCTGCGTCCTCCTCGCCGGCAACCTCCTCG
ATAACCACCTTCTCATCGCCGGCCTCGCCAGCGGTCTTCTCCAGTGGCAC
GCCCACCATTTTCTCCACGTACGTTTTCAGCGTGGACAGATCGCGAGCAC
CCGAGTACTTTTCAATCTTTTTGCCATCCTCGATCCAGAGAAGAGTGGGA
TACCCCTTGACCTCAAAGTCCTGGCAGATGGAACGGAACTGGGTGCAGTC
GATCTTCGAGATAGTTACGGTAGGCTCTTTAATCAGCTCCTTGGCCAGGT
CCTCCCACGTGGGTGCCAAACGCTGACAATGACTGCACCAGGGTGCAAAG
AATTTGACAAAGTGATTGCCGGTGGACACGTGCTTGGCAAAGGTGTCTTC
GGTAAGGTCAACCACCTTGCCAATATTAAGGTTCTCGACCTGCTCGCGCT
TGACCTCGCCCAGATCCGCCTCAGCGGGTGCGCTCAGTTCCTTATTGATG
AAATCGGTAATGGCGGGCAAGTCGCGAGTGCCCTTAAACTTGACCGATTC
CCTCTCGCCCAGCTTAAAGAGGCGCAG
BO07244.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1837-PA | 1251 | CG1837-RA | 366..1248 | 901..19 | 4415 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:20:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
prtp-RC | 1740 | CG1837-RC | 423..1331 | 927..19 | 4500 | 99.8 | Minus |
prtp-RB | 1746 | CG1837-RB | 429..1337 | 927..19 | 4500 | 99.8 | Minus |
prtp-RD | 1964 | CG1837-RD | 647..1555 | 927..19 | 4500 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:20:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11718829..11719485 | 675..19 | 3285 | 100 | Minus |
X | 23542271 | X | 11718516..11718770 | 927..673 | 1230 | 98.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:20:34 has no hits.
BO07244.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:18 Download gff for
BO07244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1837-PA | 340..1251 | 15..927 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:42 Download gff for
BO07244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1837-PA | 340..1251 | 15..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:10:56 Download gff for
BO07244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
prtp-RD | 647..1565 | 8..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:38:49 Download gff for
BO07244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
prtp-RD | 647..1565 | 8..927 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:38:49 Download gff for
BO07244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11718516..11718770 | 673..927 | 99 | -> | Minus |
X | 11718832..11719495 | 8..672 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:10:56 Download gff for
BO07244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11612549..11612803 | 673..927 | 99 | -> | Minus |
arm_X | 11612865..11613528 | 8..672 | 99 | | Minus |
BO07244.5prime Sequence
893 bp (759 high quality bases) assembled on 2005-12-04
> BO07244.5prime
GAAGTTATCAGTCGACATGTTGACCAGGTCCATTTTATCCGTTGCCGTGT
GTGGCCTCCTCCTGTCGCCCCTCCTGCCCATCACCCGTGCGTCCCAGGAG
GAGGACACCGGCAAACAGGACAAGCAGTTCACCGTGGAACTGGACCCAGA
AACCTTCGACACTGCGATTGCCGGCGGCAATGTCTTCGTCAAGTTCTTTG
CTCCATGGTGCGGCCATTGCAAGCGTATTCAGCCGCTGTGGGAACAGCTG
GCCGAGATCATGAATGTGGATAACCCCAAGGTGATCATCGCCAAGGTGGA
CTGCACCAAGCACCAGGGACTCTGCGCCACGCACCAGGTTACCGGCTATC
CCACACTGCGCCTCTTTAAGCTGGGCGAAGAGGAATCGGTCAAGTTTAAG
GGCACTCGCGACTTGCCCGCCATTACCGATTTCATCAATAAGGAACTGAG
CGCACCCGCTGAGGCGGATCTGGGCGAGGTCAAGCGCGAGCAGGTCGAGA
ACCTTAATATTGGCAAGGTGGTTGACCTTACCGAAGACACCTTTGCCAAG
CACGTGTCCACCGGCAATCACTTTGTCAAATTCTTTGCACCCTGGTGCAG
TCATTGTCAGCGTTTGGCACCCACGTGGGAGGACCTGGCCAAGGAGCTGA
TTAAAGAGCCTACCGTAACTATCTCGAAGATCGACTGCACCCAGTTCCGT
TCCATCTGCCAGGACTTTGAGGTCAAGGGGTATCCCACTCTTCTCTGGAT
CGAGGATGGCAAAAAGATTGAAAAGTACTCGGGTGCTCGCGATCTGTCCA
CGCTGAAAACGTACGTGGAGAAAATGGTGGGCGTGCCACTGGAGAAGACC
GCTGGCGAGGCCGGCGATGAGAAGGTGGTTATCGAGGAGGTTG
BO07244.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1837-PA | 1251 | CG1837-RA | 1..877 | 17..893 | 4385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:20:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
prtp-RC | 1740 | CG1837-RC | 83..960 | 16..893 | 4390 | 100 | Plus |
prtp-RB | 1746 | CG1837-RB | 89..966 | 16..893 | 4390 | 100 | Plus |
prtp-RA | 1763 | CG1837-RA | 106..983 | 16..893 | 4390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:20:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11718367..11718770 | 207..610 | 2020 | 100 | Plus |
X | 23542271 | X | 11718829..11719114 | 608..893 | 1430 | 100 | Plus |
X | 23542271 | X | 11717073..11717267 | 16..210 | 975 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:20:23 has no hits.
BO07244.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:20 Download gff for
BO07244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1837-PA | 1..877 | 17..893 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:43 Download gff for
BO07244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1837-PA | 1..877 | 17..893 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:24:37 Download gff for
BO07244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
prtp-RA | 97..983 | 8..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:48:35 Download gff for
BO07244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
prtp-RA | 97..983 | 8..893 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:48:35 Download gff for
BO07244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11717064..11717264 | 8..207 | 98 | -> | Plus |
X | 11718368..11718770 | 208..610 | 100 | -> | Plus |
X | 11718832..11719114 | 611..893 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:24:37 Download gff for
BO07244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11611097..11611297 | 8..207 | 98 | -> | Plus |
arm_X | 11612401..11612803 | 208..610 | 100 | -> | Plus |
arm_X | 11612865..11613147 | 611..893 | 100 | | Plus |
BO07244.complete Sequence
1282 bp (1282 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630719
> BO07244.complete
GAAGTTATCAGTCGACATGTTGACCAGGTCCATTTTATCCGTTGCCGTGT
GTGGCCTCCTCCTGTCGCCCCTCCTGCCCATCACCCGTGCGTCCCAGGAG
GAGGACACCGGCAAACAGGACAAGCAGTTCACCGTGGAACTGGACCCAGA
AACCTTCGACACTGCGATTGCCGGCGGCAATGTCTTCGTCAAGTTCTTTG
CTCCATGGTGCGGCCATTGCAAGCGTATTCAGCCGCTGTGGGAACAGCTG
GCCGAGATCATGAATGTGGATAACCCCAAGGTGATCATCGCCAAGGTGGA
CTGCACCAAGCACCAGGGACTCTGCGCCACGCACCAGGTTACCGGCTATC
CCACACTGCGCCTCTTTAAGCTGGGCGAAGAGGAATCGGTCAAGTTTAAG
GGCACTCGCGACTTGCCCGCCATTACCGATTTCATCAATAAGGAACTGAG
CGCACCCGCTGAGGCGGATCTGGGCGAGGTCAAGCGCGAGCAGGTCGAGA
ACCTTAATATTGGCAAGGTGGTTGACCTTACCGAAGACACCTTTGCCAAG
CACGTGTCCACCGGCAATCACTTTGTCAAATTCTTTGCACCCTGGTGCAG
TCATTGTCAGCGTTTGGCACCCACGTGGGAGGACCTGGCCAAGGAGCTGA
TTAAAGAGCCTACCGTAACTATCTCGAAGATCGACTGCACCCAGTTCCGT
TCCATCTGCCAGGACTTTGAGGTCAAGGGGTATCCCACTCTTCTCTGGAT
CGAGGATGGCAAAAAGATTGAAAAGTACTCGGGTGCTCGCGATCTGTCCA
CGCTGAAAACGTACGTGGAGAAAATGGTGGGCGTGCCACTGGAGAAGACC
GCTGGCGAGGCCGGCGATGAGAAGGTGGTTATCGAGGAGGTTGCCGGCGA
GGAGGACGCAGCCAAGAAGCTGACTCCACAACAGCTGACTGGCGAGGACG
AGTTCGACCAAGCCATTGCCGAGGGCGTTGCCTTCATTAAGTTCTATGCT
CCGTGGTGTGGACACTGCCAGAAGCTGCAACCCACCTGGGAGCAGCTGGC
CACGGAAACGCACCAGGCTCAGAGTTCCGTGAAAATTGCCAAGGTTGACT
GCACGGCGCCGGAGAACAAGCAAGTGTGCATCGACCAGCAGGTGGAGGGC
TATCCAACTCTCTTCCTTTACAAGAATGGTCAGCGCCAGAACGAGTACGA
AGGCAGCCGCTCACTGCCGGAGCTGCAGGCCTATCTGAAGAAGTTCCTCG
GCCACGACGAGCTCGCAAGCTTTCTAGACCAT
BO07244.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:00:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
prtp-RC | 1251 | CG1837-PC | 1..1248 | 17..1264 | 6240 | 100 | Plus |
prtp-RB | 1251 | CG1837-PB | 1..1248 | 17..1264 | 6240 | 100 | Plus |
prtp-RA | 1251 | CG1837-PA | 1..1248 | 17..1264 | 6240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:00:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
prtp-RC | 1740 | CG1837-RC | 83..1331 | 16..1264 | 6245 | 100 | Plus |
prtp-RB | 1746 | CG1837-RB | 89..1337 | 16..1264 | 6245 | 100 | Plus |
prtp-RA | 1763 | CG1837-RA | 106..1354 | 16..1264 | 6245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:00:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11718829..11719485 | 608..1264 | 3285 | 100 | Plus |
X | 23542271 | X | 11718367..11718770 | 207..610 | 2020 | 100 | Plus |
X | 23542271 | X | 11717073..11717267 | 16..210 | 975 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 02:00:11 has no hits.
BO07244.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:30 Download gff for
BO07244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1837-RA | 1..1251 | 17..1268 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:42 Download gff for
BO07244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1837-RA | 97..1364 | 8..1275 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:03 Download gff for
BO07244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
prtp-RA | 112..1354 | 22..1266 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:30 Download gff for
BO07244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1837-RA | 97..1364 | 8..1275 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:35:48 Download gff for
BO07244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
prtp-RA | 112..1354 | 22..1266 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:35:48 Download gff for
BO07244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11717079..11717264 | 22..207 | 100 | -> | Plus |
X | 11718368..11718770 | 208..610 | 100 | -> | Plus |
X | 11718832..11719485 | 611..1266 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:03 Download gff for
BO07244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11611112..11611297 | 22..207 | 100 | -> | Plus |
arm_X | 11612401..11612803 | 208..610 | 100 | -> | Plus |
arm_X | 11612865..11613518 | 611..1266 | 99 | | Plus |
BO07244.pep Sequence
Translation from 16 to 1282
> BO07244.pep
MLTRSILSVAVCGLLLSPLLPITRASQEEDTGKQDKQFTVELDPETFDTA
IAGGNVFVKFFAPWCGHCKRIQPLWEQLAEIMNVDNPKVIIAKVDCTKHQ
GLCATHQVTGYPTLRLFKLGEEESVKFKGTRDLPAITDFINKELSAPAEA
DLGEVKREQVENLNIGKVVDLTEDTFAKHVSTGNHFVKFFAPWCSHCQRL
APTWEDLAKELIKEPTVTISKIDCTQFRSICQDFEVKGYPTLLWIEDGKK
IEKYSGARDLSTLKTYVEKMVGVPLEKTAGEAGDEKVVIEEVAGEEDAAK
KLTPQQLTGEDEFDQAIAEGVAFIKFYAPWCGHCQKLQPTWEQLATETHQ
AQSSVKIAKVDCTAPENKQVCIDQQVEGYPTLFLYKNGQRQNEYEGSRSL
PELQAYLKKFLGHDELASFLDH
BO07244.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
prtp-PC | 416 | CG1837-PC | 1..416 | 1..416 | 2202 | 100 | Plus |
prtp-PB | 416 | CG1837-PB | 1..416 | 1..416 | 2202 | 100 | Plus |
prtp-PA | 416 | CG1837-PA | 1..416 | 1..416 | 2202 | 100 | Plus |
prtp-PD | 353 | CG1837-PD | 2..353 | 65..416 | 1875 | 100 | Plus |
prtp-PD | 353 | CG1837-PD | 106..349 | 40..272 | 486 | 39 | Plus |
CG9302-PA | 510 | CG9302-PA | 165..498 | 56..407 | 325 | 25.1 | Plus |
prtp-PD | 353 | CG1837-PD | 226..348 | 22..144 | 260 | 44.1 | Plus |