Clone BO07245 Report

Search the DGRC for BO07245

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:72
Well:45
Vector:pDNR-Dual
Associated Gene/TranscriptRhoBTB-RA
Protein status:BO07245.pep: Imported from assembly
Sequenced Size:2269

Clone Sequence Records

BO07245.3prime Sequence

904 bp (786 high quality bases) assembled on 2005-12-04

> BO07245.3prime
ATGGTCTAGAAAGCTTGCGAGATTCAGGTCCATGTCCGCCTCCAGATCAA
TGTGGTTGAGCGAGTTGCCGGCGCTGTTGAAGATCTGATTATCTGCGTTG
CTGTTATCCGTGGTTCCACTCACATCAGCGCTTCGCTTCGATTTACCTAA
CAGCCAGCAAGAGAATACGCCCGTAAAGCACAGACAGCCCTCGTCATCGC
TAGGCGATTCCCGCCTCGAAGTCTTTAGCTTAAGCTCCTTGTTCAGCTCG
TTCAGGCATCGCTGATAGTAATCATAGTCTTTCAGATACCAGACTGGAGG
CCATCGGTGCTCGCGCAAGTACTCCTGATTATCCTGGTGTAGCGCCTTTA
GGCCCTTGAGTGAAAACTTACAAATAAGGTTGTAATTGACGCACAGGTAT
GACATGCACCACTCGGCCAATTGATGTGCGTTGTGCAGCTTCACTGGCTC
GAGCAGCTTTAGACAGTGATCCACCGTTTCATTGGTTTCGTTCTGAGAAA
TCAGAGTGAGATCTTCAATAACGCGGCATTCAACCAGGTTGAGCAGCCGC
GGCAGGCAGAGTCTATTGGCCAGCTCCAGCAGATTGAGGCACTTGACGGC
CGAGATTGGCGGAATCTGGTCTGTGTACAAATAGCACAGCAGCTTGTGGA
ATGTGTAAATGGTAACGCCAGGGAATACGATCACATTGGAATGAGCCTCG
CGAAAGTCGCCTAACAACATTGCGCGCATGACATCACAACGACCAACCAA
CACAGCGCGGTGTGCCTTCATTAAGCCATCGTCCAATTCAAAGGTGACAT
CACTGAAGCACCCGTCACCAATGGCATGCCGTTCCATGCTTTCTTTGATG
CGCANGCAAATGTGCGGATTTGGCTCATCGCTGGAGTTCTCCCATACGGT
TTTG

BO07245.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG5701-PA 2238 RhoBTB-RA 1362..2235 892..19 4301 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:09:09
Subject Length Description Subject Range Query Range Score Percent Strand
RhoBTB-RB 3257 CG5701-RB 1741..2624 902..19 4334 99.4 Minus
RhoBTB-RA 3257 CG5701-RA 1741..2624 902..19 4334 99.4 Minus
RhoBTB-RC 2974 CG5701-RC 1479..2341 902..19 4009 97.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:09:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20381020..20381292 440..168 1365 100 Minus
3L 28110227 3L 20380714..20380964 682..432 1225 99.2 Minus
3L 28110227 3L 20381546..20381695 168..19 750 100 Minus
3L 28110227 3L 20380568..20380653 767..682 430 100 Minus
3L 28110227 3L 20380412..20380504 853..761 420 96.8 Minus
3L 28110227 3L 20380299..20380345 902..856 190 93.6 Minus
Blast to na_te.dros performed on 2015-02-11 17:09:04 has no hits.

BO07245.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:21 Download gff for BO07245.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5701-PA 1351..2238 16..904 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:44 Download gff for BO07245.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5701-PA 1351..2238 16..904 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:42:32 Download gff for BO07245.3prime
Subject Subject Range Query Range Percent Splice Strand
RhoBTB-RA 1740..2624 19..904 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:59:27 Download gff for BO07245.3prime
Subject Subject Range Query Range Percent Splice Strand
RhoBTB-RA 1740..2624 19..904 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:59:27 Download gff for BO07245.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20380298..20380348 853..904 92 -> Minus
3L 20380413..20380499 766..852 97 -> Minus
3L 20380570..20380653 682..765 100 -> Minus
3L 20380715..20380957 439..681 100 -> Minus
3L 20381022..20381292 168..438 100 -> Minus
3L 20381547..20381695 19..167 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:42:32 Download gff for BO07245.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20373398..20373448 853..904 92 -> Minus
arm_3L 20373513..20373599 766..852 97 -> Minus
arm_3L 20373670..20373753 682..765 100 -> Minus
arm_3L 20373815..20374057 439..681 100 -> Minus
arm_3L 20374122..20374392 168..438 100 -> Minus
arm_3L 20374647..20374795 19..167 100   Minus

BO07245.5prime Sequence

947 bp (825 high quality bases) assembled on 2005-12-04

> BO07245.5prime
GAAGTTATCAGTCGACATGCCCAAAATGGACAACGAGCAGCCGCATCAAG
AGCTAGTGAAGTGCGTCCTGGTGGGGGACACGGCCGTGGGCAAGACGCGA
CTGATCTGCGCGAGGGCCTGCAACAAACACGTCTCGCTATCTCAGCTCCT
CTCTACGCACGTGCCGACCGTGTGGGCCATTGACCAGTATCGCATATATA
AGGATGTACTCGAGCGATCATGGGAGGTGGTCGATGGAGTGAATGTCTCA
CTTCGCCTATGGGACACATTTGGTGACCACGACAAGGATCGGCGCTTCGC
ATACGGCAGATCCGATGTGGTGCTGCTGTGCTTTTCCATTGCCAGTCCGA
TTTCCCTGCGCAACTGCAAGATGATGTGGTATCCGGAAATTCGCCGCTTT
TGTCCGGATGTTCCCGTCATTCTAGTTGGCTGCAAGAACGACCTGCGCTA
CATGTATCGCGACGAGAACTATCTCTCGTATTTCGGCGAGAAGGGAACCT
TTGTTCGAGCCGCGTTGAAGAGTGACCTGGTTATGCCGGATGAGGCGCGT
GCCGTCGCCAAAGAGCTAGGAGTGGCGTACTACGAGACCAGTGTTTTCAC
ATACTTTGGGGTGAACGAGGTGTTTGAAAACGCCATCCGATCCGCGTTGA
TTGCACGCCGACAGCAGCGCTTCTGGATGACAAACCTGAAGAAGGTGCAG
AAGCCCCTGCTGCAGGCGCCGTTCCGGCCACCGAAGCCACCACCACCGGA
GGTCACCGTCATGGTCGGCAACTATCGGCAGGACATCTACAACATGTTCC
TGTCGCANGCCTACACCGACCTCGTCCTGGTCGGGGCGGGTGGCACCAAG
TTCGCCGTGCACAGGTTCATGCTAGCCGCCGCGTCCAGCATCTTCCAGCG
CCTGCTTAGCACTGAGCTGACTGATATGGGGCGGGCGGAGCAGCAGC

BO07245.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG5701-PA 2238 RhoBTB-RA 1..914 17..930 4551 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:54:33
Subject Length Description Subject Range Query Range Score Percent Strand
RhoBTB-RC 2974 CG5701-RC 127..1057 16..947 4624 99.8 Plus
RhoBTB-RB 3257 CG5701-RB 389..1319 16..947 4624 99.8 Plus
RhoBTB-RA 3257 CG5701-RA 389..1319 16..947 4624 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:54:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20379311..20379750 507..947 2144 99.5 Plus
3L 28110227 3L 20378879..20379079 307..507 1005 100 Plus
3L 28110227 3L 20378459..20378650 16..207 960 100 Plus
3L 28110227 3L 20378712..20378815 206..309 520 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:54:31 has no hits.

BO07245.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:21 Download gff for BO07245.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5701-PA 1..930 17..947 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:45 Download gff for BO07245.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5701-PA 1..930 17..947 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:24:30 Download gff for BO07245.5prime
Subject Subject Range Query Range Percent Splice Strand
RhoBTB-RA 381..1319 6..947 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:02:33 Download gff for BO07245.5prime
Subject Subject Range Query Range Percent Splice Strand
RhoBTB-RA 381..1319 6..947 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:02:33 Download gff for BO07245.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20378882..20379079 310..507 100 -> Plus
3L 20379312..20379750 508..947 99   Plus
3L 20378451..20378648 6..205 98 -> Plus
3L 20378712..20378815 206..309 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:24:30 Download gff for BO07245.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20371551..20371748 6..205 98 -> Plus
arm_3L 20371812..20371915 206..309 100 -> Plus
arm_3L 20371982..20372179 310..507 100 -> Plus
arm_3L 20372412..20372850 508..947 99   Plus

BO07245.complete Sequence

2269 bp assembled on 2008-08-14

GenBank Submission: FJ630720

> BO07245.complete
GAAGTTATCAGTCGACATGCCCAAAATGGACAACGAGCAGCCGCATCAAG
AGCTAGTGAAGTGCGTCCTGGTGGGGGACACGGCCGTGGGCAAGACGCGA
CTGATCTGCGCGAGGGCCTGCAACAAACACGTCTCGCTATCTCAGCTCCT
CTCTACGCACGTGCCGACCGTGTGGGCCATTGACCAGTATCGCATATATA
AGGATGTACTCGAGCGATCATGGGAGGTGGTCGATGGAGTGAATGTCTCA
CTTCGCCTATGGGACACATTTGGTGACCACGACAAGGATCGGCGCTTCGC
ATACGGCAGATCCGATGTGGTGCTGCTGTGCTTTTCCATTGCCAGTCCGA
TTTCCCTGCGCAACTGCAAGATGATGTGGTATCCGGAAATTCGCCGCTTT
TGTCCGGATGTTCCCGTCATTCTAGTTGGCTGCAAGAACGACCTGCGCTA
CATGTATCGCGACGAGAACTATCTCTCGTATTTCGGCGAGAAGGGAACCT
TTGTTCGAGCCGCGTTGAAGAGTGACCTGGTTATGCCGGATGAGGCGCGT
GCCGTCGCCAAAGAGCTAGGAGTGGCGTACTACGAGACCAGTGTTTTCAC
ATACTTTGGGGTGAACGAGGTGTTTGAAAACGCCATCCGATCCGCGTTGA
TTGCACGCCGACAGCAGCGCTTCTGGATGACAAACCTGAAGAAGGTGCAG
AAGCCCCTGCTGCAGGCGCCGTTCCGGCCACCGAAGCCACCACCACCGGA
GGTCACCGTCATGGTCGGCAACTATCGGCAGGACATCTACAACATGTTCC
TGTCGCAGGCCTACACCGACCTCGTCCTGGTCGGGGCGGGTGGCACCAAG
TTCGCCGTGCACAGGTTCATGCTAGCCGCCGCGTCCAGCATCTTCCAGCG
CCTGCTTAGCACTGAGCTGACTGATATGGGCGGGCGGAGCAGCAGCGAAT
CTAGCATGGTCAGCTCAACATTCGGGGAGGCCACCATTGCGGACTTTAAC
GATGACACGGAGGCCCTGATCCGCTACGAATCACGCACACAACGAATGTG
GGAACACTTGAAGCGCCGCTCCAGCTACCAGGCGTTGCCTCTCATGGAGT
CTAAGCGGTCCAACGATTTGTACAGGGAGCTGCATCATCCGGTCCTGCAG
AGCATTCGCCTGGTGCACGTGGAAAACCATCGGGGTGTAAATGGTCTGCA
GACGATTGTCACCCTTAGCAAACTTATCTCTCCGCAAGCTCTGCACCAGT
GCCTGAGATTTATTTATACCGGTACCATTGACAAGGATTGCGATAATATC
GAGGAAATTCGAGAAGCTGCCGATCTATTAGAACTGCCGCAACTGACTCA
GCTACTTTCCAGGCCTCAAACCGTTATGGAGAACTCCAGCGATGAGCCAA
ATCCGCACATTTGCCTGCGCATCAAAGAAAGCATGGAACGGCATTGCATT
GGTGACGGGTGCTTCAGTGATGTCACCTTTGAATTGGACGATGGCTTAAT
GAAGGCACACCGCGCTGTGTTGGTTGGTCGTTGTGATGTCATGCGCGCAA
TGTTGTTAGGCGACTTTCGCGAGGCTCATTCCAATGTGATCGTATTCCCT
GGCGTTACCATTTACACATTCCACAAGCTGCTGTGCTATTTGTACACAGA
CCAGATTCCGCCAATCTCGGCCGTCAAGTGCCTCAATCTGCTGGAGCTGG
CCAATAGACTCTGCCTGCCGCGGCTGCTCAACCTGGTTGAATGCCGCGTT
ATTGAAGATCTCACTCTGATTTCTCAGAACGAAACCAATGAAACGGTGGA
TCACTGTCTAAAGCTGCTCGAGCCAGTGAAGCTGCACAACGCACATCAAT
TGGCCGAGTGGTGCATGTCATACCTGTGCGTCAATTACAACCTTATTTGT
AAGTTTTCACTCAAGGGCCTAAAGGCGCTACACCAGGATAATCAGGAGTA
CTTGCGCGAGCACCGATGGCCTCCAGTCTGGTATCTGAAAGACTATGATT
ACTATCAGCGATGCCTGAACGAGCTGAACAAGGAGCTTAAGCTAAAGACT
TCGAGGCGGGAATCGCCTAGCGATGACGAGGGCTGTCTGTGCTTTACGGG
CGTATTCTCTTGCTGGCTGTTAGGTAAATCGAAGCGAAGCGCTGATGTGA
GTGGAACCACGGATAACAGCAACGCAGATAATCAGATCTTCAACAGCGCC
GGCAACTCGCTCAACCACATTGATCTGGAGGCGGACATGGACCTGAATCT
CGCAAGCTTTCTAGACCAT

BO07245.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:56:17
Subject Length Description Subject Range Query Range Score Percent Strand
RhoBTB-RB 2352 CG5701-PB 1..2235 17..2251 11175 100 Plus
RhoBTB-RA 2238 CG5701-PA 1..2235 17..2251 11175 100 Plus
RhoBTB-RC 2217 CG5701-PC 1..2214 17..2251 10825 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:56:18
Subject Length Description Subject Range Query Range Score Percent Strand
RhoBTB-RB 3257 CG5701-RB 389..2624 16..2251 11180 100 Plus
RhoBTB-RA 3257 CG5701-RA 389..2624 16..2251 11180 100 Plus
RhoBTB-RC 2974 CG5701-RC 127..2341 16..2251 10830 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:56:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20379311..20379848 507..1044 2690 100 Plus
3L 28110227 3L 20381020..20381292 1830..2102 1365 100 Plus
3L 28110227 3L 20379910..20380170 1044..1304 1305 100 Plus
3L 28110227 3L 20380714..20380964 1588..1838 1225 99.2 Plus
3L 28110227 3L 20378879..20379079 307..507 1005 100 Plus
3L 28110227 3L 20378459..20378650 16..207 960 100 Plus
3L 28110227 3L 20381546..20381695 2102..2251 750 100 Plus
3L 28110227 3L 20380233..20380348 1302..1417 580 100 Plus
3L 28110227 3L 20378712..20378815 206..309 520 100 Plus
3L 28110227 3L 20380412..20380504 1417..1509 450 98.9 Plus
3L 28110227 3L 20380568..20380653 1503..1588 430 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:56:15 has no hits.

BO07245.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:43:12 Download gff for BO07245.complete
Subject Subject Range Query Range Percent Splice Strand
RhoBTB-RA 411..2654 6..2251 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:41 Download gff for BO07245.complete
Subject Subject Range Query Range Percent Splice Strand
RhoBTB-RA 390..2624 17..2253 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:00:38 Download gff for BO07245.complete
Subject Subject Range Query Range Percent Splice Strand
RhoBTB-RA 420..2654 17..2253 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:46 Download gff for BO07245.complete
Subject Subject Range Query Range Percent Splice Strand
RhoBTB-RA 390..2624 17..2253 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:46 Download gff for BO07245.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20380715..20380957 1589..1831 100 -> Plus
3L 20381022..20381292 1832..2102 100 -> Plus
3L 20380570..20380653 1505..1588 100 -> Plus
3L 20381547..20381695 2103..2253 98   Plus
3L 20379911..20380169 1045..1303 100 -> Plus
3L 20380235..20380348 1304..1417 100 -> Plus
3L 20380413..20380499 1418..1504 100 -> Plus
3L 20378460..20378648 17..205 100 -> Plus
3L 20378712..20378815 206..309 100 -> Plus
3L 20378882..20379079 310..507 100 -> Plus
3L 20379312..20379848 508..1044 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:41 Download gff for BO07245.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20374647..20374795 2103..2253 98   Plus
arm_3L 20374122..20374392 1832..2102 100 -> Plus
arm_3L 20371560..20371748 17..205 100 -> Plus
arm_3L 20371812..20371915 206..309 100 -> Plus
arm_3L 20371982..20372179 310..507 100 -> Plus
arm_3L 20372412..20372948 508..1044 100 -> Plus
arm_3L 20373011..20373269 1045..1303 100 -> Plus
arm_3L 20373335..20373448 1304..1417 100 -> Plus
arm_3L 20373513..20373599 1418..1504 100 -> Plus
arm_3L 20373670..20373753 1505..1588 100 -> Plus
arm_3L 20373815..20374057 1589..1831 100 -> Plus

BO07245.pep Sequence

Translation from 16 to 2269

> BO07245.pep
MPKMDNEQPHQELVKCVLVGDTAVGKTRLICARACNKHVSLSQLLSTHVP
TVWAIDQYRIYKDVLERSWEVVDGVNVSLRLWDTFGDHDKDRRFAYGRSD
VVLLCFSIASPISLRNCKMMWYPEIRRFCPDVPVILVGCKNDLRYMYRDE
NYLSYFGEKGTFVRAALKSDLVMPDEARAVAKELGVAYYETSVFTYFGVN
EVFENAIRSALIARRQQRFWMTNLKKVQKPLLQAPFRPPKPPPPEVTVMV
GNYRQDIYNMFLSQAYTDLVLVGAGGTKFAVHRFMLAAASSIFQRLLSTE
LTDMGGRSSSESSMVSSTFGEATIADFNDDTEALIRYESRTQRMWEHLKR
RSSYQALPLMESKRSNDLYRELHHPVLQSIRLVHVENHRGVNGLQTIVTL
SKLISPQALHQCLRFIYTGTIDKDCDNIEEIREAADLLELPQLTQLLSRP
QTVMENSSDEPNPHICLRIKESMERHCIGDGCFSDVTFELDDGLMKAHRA
VLVGRCDVMRAMLLGDFREAHSNVIVFPGVTIYTFHKLLCYLYTDQIPPI
SAVKCLNLLELANRLCLPRLLNLVECRVIEDLTLISQNETNETVDHCLKL
LEPVKLHNAHQLAEWCMSYLCVNYNLICKFSLKGLKALHQDNQEYLREHR
WPPVWYLKDYDYYQRCLNELNKELKLKTSRRESPSDDEGCLCFTGVFSCW
LLGKSKRSADVSGTTDNSNADNQIFNSAGNSLNHIDLEADMDLNLASFLD
H

BO07245.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:04:20
Subject Length Description Subject Range Query Range Score Percent Strand
RhoBTB-PB 783 CG5701-PB 1..745 1..745 3941 100 Plus
RhoBTB-PA 745 CG5701-PA 1..745 1..745 3941 100 Plus
RhoBTB-PC 738 CG5701-PC 1..738 1..745 3881 99.1 Plus
Rho1-PA 192 CG8416-PA 7..186 15..218 304 39.6 Plus
Rho1-PG 192 CG8416-PG 7..186 15..218 304 39.6 Plus