Clone BO07246 Report

Search the DGRC for BO07246

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:72
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG15141-RA
Protein status:BO07246.pep: validated full length
Sequenced Size:1246

Clone Sequence Records

BO07246.3prime Sequence

932 bp (859 high quality bases) assembled on 2005-12-04

> BO07246.3prime
ATGGTCTAGAAAGCTTGCGCGACAGAAATAGGGCTGACCCAGGTTGGCAT
TGTTCTCATTGCGCATGCCGGCAAAGAACCGATTGATATCCTCCTCGGTC
ACTACCTTCTTGCTGGCGGCGAATGCCTGCAGGTATTCCTTTAGCTTGTC
CTTCATGCGATTGTATTCGGTAATCGCATCGATTTGCTGTGTCCGGTCAA
TGGAGGCCAGTGCCCGGATTCCTTGCTCATAACTGGAATTCTCTTCAGCC
CGCTTCATGCCGCGCTCCTCGTACGTCTTAGCCGAATCCTCGACATCCAG
CAGAAACTCCACGGCAAGTTCCTTGTAAAGCGACAGGCATTCGGAGCACT
GACAGAGTGATTTTCGCCAGTCATTTGTCCAGAAAGCAGCTCCCTGATGC
TCCTTGGTTGGTTTGGGCCGACGACAATCGTCCAGTTTGGCGCGCTTCTG
GCTGGGTTCGCCTTCGTCTGGCTGAGATTCACCTTCAGGAACTTTCATGA
TATCGCAGATGCTGCGGTCCAACTCGTTCTTCAGCTGGCTATCGTCAGCC
TCCGGCTTGTCCTCCTTCGCATCTTCTAGCACAGGCTGCAGGGCTAATCC
AGTGTAGTCCTTTAGGAAGGGTTTGGCATCCATGCAGCCATCGCAAATCA
TTTCGCTGCAGACATCCAGCCACTTGTCGCTGGCGCCGGGCGCTTTCATG
TGCGGCAAGTGGAACCAGTCCTCGCAGATGGCGCACTGCAGCATAACCTC
CTCAACGGTGCGATCGGGATCGGGATAGGGTCGCTTGCACTTGCAGTACA
GCCCCTGGAAGTTCTGGTTATACAGATTGCCCACGTTACGTGGTTGAACG
CCCTCGACTTGTGGGTTCAGGGAGCACTTGCCCAGACGCTGGGTGGGACA
ATCGCAGCGGAAATTCCGCTTAGTATAGAGCT

BO07246.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG15141-PA 1215 CG15141-RA 299..1212 932..19 4570 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:00:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG15141-RA 1683 CG15141-RA 439..1352 932..19 4570 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17411079..17411619 932..392 2705 100 Minus
2L 23513712 2L 17412790..17413168 397..19 1880 99.7 Minus
Blast to na_te.dros performed 2015-02-12 16:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
I-element 5371 I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). 4857..4906 204..156 121 74 Minus

BO07246.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:22 Download gff for BO07246.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15141-PA 299..1215 15..932 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:47 Download gff for BO07246.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15141-PA 299..1215 15..932 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:16:26 Download gff for BO07246.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15141-RA 439..1355 15..932 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:34:21 Download gff for BO07246.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15141-RA 439..1355 15..932 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:34:21 Download gff for BO07246.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 17411079..17411618 393..932 100 -> Minus
2L 17412795..17413171 15..392 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:16:26 Download gff for BO07246.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17411079..17411618 393..932 100 -> Minus
arm_2L 17412795..17413171 15..392 99   Minus

BO07246.5prime Sequence

927 bp (781 high quality bases) assembled on 2005-12-04

> BO07246.5prime
GAAGTTATCAGTCGACATGAGCGAGTCGAATGCCACAGATGGTGTCCACG
AGGTTGAGGAGTCCAATCCGCTGGAGCAGTCGACCATTACGATGCTAGAT
GTCCTGGAACAGGAAAAGGAGCTGGAGGACGAGTACGCCGCAGTGCTGGG
CGCCTCCGATGAGAAGTCGTGCACTTACGCCAAGGGCCCCATCGGCCGAC
AGGCTCTGTACTCGTGCCTCACTTGTTGCCCCGAGGCGCGCGAGGATCTG
GACAAGGCCGCAGGAGTCTGCTTGGCCTGCTCCTATCGCTGTCACGAGCA
CCACGAACTGGTGGAGCTCTATACTAAGCGGAATTTCCGCTGCGATTGTC
CCACCCAGCGTCTGGGCAAGTGCTCCCTGAACCCACAAGTCGAGGGCGTT
CAACCACGTAACGTGGGCAATCTGTATAACCAGAACTTCCAGGGGCTGTA
CTGCAAGTGCAAGCGACCCTATCCCGATCCCGATCGCACCGTTGAGGAGG
TTATGCTGCAGTGCGCCATCTGCGAGGACTGGTTCCACTTGCCGCACATG
AAAGCGCCCGGCGCCAGCGACAAGTGGCTGGATGTCTGCAGCGAAATGAT
TTGCGATGGCTGCATGGATGCCAAACCCTTCCTAAAGGACTACACTGGAT
TAGCCCTGCAGCCTGTGCTAGAAGATGCGAAGGAGGACAAGCCGGAGGCT
GACGATAGCCAGCTGAAGAACGAGTTGGACCGCAGCATCTGCGATATCAT
GAAAGTTCCTGAAGGTGAATCTCAGCCAGACGAAGGCGAACCCAGCCAGA
AGCGCGCCAAACTGGACGATTGTCGTCGGCCCCAACCAACCAAGGAGCAT
CAGGGAGCTGCTTTCTGGACAATGACTGGCGAAATCACTCTGTCAGTGCT
CCGAATGCCTGTCGCTTTACAGGAACT

BO07246.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG15141-PA 1215 CG15141-RA 1..856 17..872 4255 99.8 Plus
CG15141-PA 1215 CG15141-RA 868..907 882..921 200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG15141-RA 1683 CG15141-RA 138..1054 14..927 4495 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17410778..17411619 14..855 4195 99.9 Plus
2L 23513712 2L 17412790..17412863 850..921 255 95.9 Plus
Blast to na_te.dros performed on 2015-02-13 16:20:42 has no hits.

BO07246.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:23 Download gff for BO07246.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15141-PA 1..914 17..927 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:49 Download gff for BO07246.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15141-PA 1..914 17..927 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:10:58 Download gff for BO07246.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15141-RA 133..1054 9..927 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:39:19 Download gff for BO07246.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15141-RA 133..1054 9..927 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:39:19 Download gff for BO07246.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 17410773..17411618 9..854 99 -> Plus
2L 17412795..17412870 855..927 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:10:58 Download gff for BO07246.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17410773..17411618 9..854 99 -> Plus
arm_2L 17412795..17412870 855..927 96   Plus

BO07246.complete Sequence

1246 bp (1246 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630721

> BO07246.complete
GAAGTTATCAGTCGACATGAGCGAGTCGAATGCCACAGATGGTGTCCACG
AGGTTGAGGAGTCCAATCCGCTGGAGCAGTCGACCATTACGATGCTAGAT
GTCCTGGAACAGGAAAAGGAGCTGGAGGACGAGTACGCCGCAGTGCTGGG
CGCCTCCGATGAGAAGTCGTGCACTTACGCCAAGGGCCCCATCGGCCGAC
AGGCTCTGTACTCGTGCCTCACTTGTTGCCCCGAGGCGCGCGAGGATCTG
GACAAGGCCGCAGGAGTCTGCTTGGCCTGCTCCTATCGCTGTCACGAGCA
CCACGAACTGGTGGAGCTCTATACTAAGCGGAATTTCCGCTGCGATTGTC
CCACCCAGCGTCTGGGCAAGTGCTCCCTGAACCCACAAGTCGAGGGCGTT
CAACCACGTAACGTGGGCAATCTGTATAACCAGAACTTCCAGGGGCTGTA
CTGCAAGTGCAAGCGACCCTATCCCGATCCCGATCGCACCGTTGAGGAGG
TTATGCTGCAGTGCGCCATCTGCGAGGACTGGTTCCACTTGCCGCACATG
AAAGCGCCCGGCGCCAGCGACAAGTGGCTGGATGTCTGCAGCGAAATGAT
TTGCGATGGCTGCATGGATGCCAAACCCTTCCTAAAGGACTACACTGGAT
TAGCCCTGCAGCCTGTGCTAGAAGATGCGAAGGAGGACAAGCCGGAGGCT
GACGATAGCCAGCTGAAGAACGAGTTGGACCGCAGCATCTGCGATATCAT
GAAAGTTCCTGAAGGTGAATCTCAGCCAGACGAAGGCGAACCCAGCCAGA
AGCGCGCCAAACTGGACGATTGTCGTCGGCCCAAACCAACCAAGGAGCAT
CAGGGAGCTGCTTTCTGGACAAATGACTGGCGAAAATCACTCTGTCAGTG
CTCCGAATGCCTGTCGCTTTACAAGGAACTTGCCGTGGAGTTTCTGCTGG
ATGTCGAGGATTCGGCTAAGACGTACGAGGAGCGCGGCATGAAGCGGGCT
GAAGAGAATTCCAGTTATGAGCAAGGAATCCGGGCACTGGCCTCCATTGA
CCGGACACAGCAAATCGATGCGATTACCGAATACAATCGCATGAAGGACA
AGCTAAAGGAATACCTGCAGGCATTCGCCGCCAGCAAGAAGGTAGTGACC
GAGGAGGATATCAATCGGTTCTTTGCCGGCATGCGCAATGAGAACAATGC
CAACCTGGGTCAGCCCTATTTCTGTCGCGCAAGCTTTCTAGACCAT

BO07246.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG15141-RA 1215 CG15141-PA 1..1212 17..1228 6060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:54:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG15141-RA 1683 CG15141-RA 138..1352 14..1228 6075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:54:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17410778..17411619 14..855 4210 100 Plus
2L 23513712 2L 17412790..17413168 850..1228 1880 99.7 Plus
Blast to na_te.dros performed 2014-11-28 00:54:02
Subject Length Description Subject Range Query Range Score Percent Strand
I-element 5371 I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). 4857..4906 1043..1091 121 74 Plus

BO07246.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:31 Download gff for BO07246.complete
Subject Subject Range Query Range Percent Splice Strand
CG15141-RA 1..1215 17..1232 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:44 Download gff for BO07246.complete
Subject Subject Range Query Range Percent Splice Strand
CG15141-RA 117..1339 9..1232 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:33:51 Download gff for BO07246.complete
Subject Subject Range Query Range Percent Splice Strand
CG15141-RA 141..1352 17..1230 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:32 Download gff for BO07246.complete
Subject Subject Range Query Range Percent Splice Strand
CG15141-RA 117..1339 9..1232 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:08 Download gff for BO07246.complete
Subject Subject Range Query Range Percent Splice Strand
CG15141-RA 141..1352 17..1230 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:08 Download gff for BO07246.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17410781..17411618 17..854 100 -> Plus
2L 17412795..17413168 855..1230 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:33:51 Download gff for BO07246.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17410781..17411618 17..854 100 -> Plus
arm_2L 17412795..17413168 855..1230 99   Plus

BO07246.pep Sequence

Translation from 16 to 1246

> BO07246.pep
MSESNATDGVHEVEESNPLEQSTITMLDVLEQEKELEDEYAAVLGASDEK
SCTYAKGPIGRQALYSCLTCCPEAREDLDKAAGVCLACSYRCHEHHELVE
LYTKRNFRCDCPTQRLGKCSLNPQVEGVQPRNVGNLYNQNFQGLYCKCKR
PYPDPDRTVEEVMLQCAICEDWFHLPHMKAPGASDKWLDVCSEMICDGCM
DAKPFLKDYTGLALQPVLEDAKEDKPEADDSQLKNELDRSICDIMKVPEG
ESQPDEGEPSQKRAKLDDCRRPKPTKEHQGAAFWTNDWRKSLCQCSECLS
LYKELAVEFLLDVEDSAKTYEERGMKRAEENSSYEQGIRALASIDRTQQI
DAITEYNRMKDKLKEYLQAFAASKKVVTEEDINRFFAGMRNENNANLGQP
YFCRASFLDH

BO07246.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG15141-PA 404 CG15141-PA 1..404 1..404 2186 100 Plus