Clone Sequence Records
BO07246.3prime Sequence
932 bp (859 high quality bases) assembled on 2005-12-04
> BO07246.3prime
ATGGTCTAGAAAGCTTGCGCGACAGAAATAGGGCTGACCCAGGTTGGCAT
TGTTCTCATTGCGCATGCCGGCAAAGAACCGATTGATATCCTCCTCGGTC
ACTACCTTCTTGCTGGCGGCGAATGCCTGCAGGTATTCCTTTAGCTTGTC
CTTCATGCGATTGTATTCGGTAATCGCATCGATTTGCTGTGTCCGGTCAA
TGGAGGCCAGTGCCCGGATTCCTTGCTCATAACTGGAATTCTCTTCAGCC
CGCTTCATGCCGCGCTCCTCGTACGTCTTAGCCGAATCCTCGACATCCAG
CAGAAACTCCACGGCAAGTTCCTTGTAAAGCGACAGGCATTCGGAGCACT
GACAGAGTGATTTTCGCCAGTCATTTGTCCAGAAAGCAGCTCCCTGATGC
TCCTTGGTTGGTTTGGGCCGACGACAATCGTCCAGTTTGGCGCGCTTCTG
GCTGGGTTCGCCTTCGTCTGGCTGAGATTCACCTTCAGGAACTTTCATGA
TATCGCAGATGCTGCGGTCCAACTCGTTCTTCAGCTGGCTATCGTCAGCC
TCCGGCTTGTCCTCCTTCGCATCTTCTAGCACAGGCTGCAGGGCTAATCC
AGTGTAGTCCTTTAGGAAGGGTTTGGCATCCATGCAGCCATCGCAAATCA
TTTCGCTGCAGACATCCAGCCACTTGTCGCTGGCGCCGGGCGCTTTCATG
TGCGGCAAGTGGAACCAGTCCTCGCAGATGGCGCACTGCAGCATAACCTC
CTCAACGGTGCGATCGGGATCGGGATAGGGTCGCTTGCACTTGCAGTACA
GCCCCTGGAAGTTCTGGTTATACAGATTGCCCACGTTACGTGGTTGAACG
CCCTCGACTTGTGGGTTCAGGGAGCACTTGCCCAGACGCTGGGTGGGACA
ATCGCAGCGGAAATTCCGCTTAGTATAGAGCT
BO07246.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15141-PA | 1215 | CG15141-RA | 299..1212 | 932..19 | 4570 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:00:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15141-RA | 1683 | CG15141-RA | 439..1352 | 932..19 | 4570 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:00:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17411079..17411619 | 932..392 | 2705 | 100 | Minus |
2L | 23513712 | 2L | 17412790..17413168 | 397..19 | 1880 | 99.7 | Minus |
Blast to na_te.dros performed 2015-02-12 16:00:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 4857..4906 | 204..156 | 121 | 74 | Minus |
BO07246.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:22 Download gff for
BO07246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15141-PA | 299..1215 | 15..932 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:47 Download gff for
BO07246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15141-PA | 299..1215 | 15..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:16:26 Download gff for
BO07246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15141-RA | 439..1355 | 15..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:34:21 Download gff for
BO07246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15141-RA | 439..1355 | 15..932 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:34:21 Download gff for
BO07246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17411079..17411618 | 393..932 | 100 | -> | Minus |
2L | 17412795..17413171 | 15..392 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:16:26 Download gff for
BO07246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17411079..17411618 | 393..932 | 100 | -> | Minus |
arm_2L | 17412795..17413171 | 15..392 | 99 | | Minus |
BO07246.5prime Sequence
927 bp (781 high quality bases) assembled on 2005-12-04
> BO07246.5prime
GAAGTTATCAGTCGACATGAGCGAGTCGAATGCCACAGATGGTGTCCACG
AGGTTGAGGAGTCCAATCCGCTGGAGCAGTCGACCATTACGATGCTAGAT
GTCCTGGAACAGGAAAAGGAGCTGGAGGACGAGTACGCCGCAGTGCTGGG
CGCCTCCGATGAGAAGTCGTGCACTTACGCCAAGGGCCCCATCGGCCGAC
AGGCTCTGTACTCGTGCCTCACTTGTTGCCCCGAGGCGCGCGAGGATCTG
GACAAGGCCGCAGGAGTCTGCTTGGCCTGCTCCTATCGCTGTCACGAGCA
CCACGAACTGGTGGAGCTCTATACTAAGCGGAATTTCCGCTGCGATTGTC
CCACCCAGCGTCTGGGCAAGTGCTCCCTGAACCCACAAGTCGAGGGCGTT
CAACCACGTAACGTGGGCAATCTGTATAACCAGAACTTCCAGGGGCTGTA
CTGCAAGTGCAAGCGACCCTATCCCGATCCCGATCGCACCGTTGAGGAGG
TTATGCTGCAGTGCGCCATCTGCGAGGACTGGTTCCACTTGCCGCACATG
AAAGCGCCCGGCGCCAGCGACAAGTGGCTGGATGTCTGCAGCGAAATGAT
TTGCGATGGCTGCATGGATGCCAAACCCTTCCTAAAGGACTACACTGGAT
TAGCCCTGCAGCCTGTGCTAGAAGATGCGAAGGAGGACAAGCCGGAGGCT
GACGATAGCCAGCTGAAGAACGAGTTGGACCGCAGCATCTGCGATATCAT
GAAAGTTCCTGAAGGTGAATCTCAGCCAGACGAAGGCGAACCCAGCCAGA
AGCGCGCCAAACTGGACGATTGTCGTCGGCCCCAACCAACCAAGGAGCAT
CAGGGAGCTGCTTTCTGGACAATGACTGGCGAAATCACTCTGTCAGTGCT
CCGAATGCCTGTCGCTTTACAGGAACT
BO07246.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15141-PA | 1215 | CG15141-RA | 1..856 | 17..872 | 4255 | 99.8 | Plus |
CG15141-PA | 1215 | CG15141-RA | 868..907 | 882..921 | 200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:20:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15141-RA | 1683 | CG15141-RA | 138..1054 | 14..927 | 4495 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:20:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17410778..17411619 | 14..855 | 4195 | 99.9 | Plus |
2L | 23513712 | 2L | 17412790..17412863 | 850..921 | 255 | 95.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:20:42 has no hits.
BO07246.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:23 Download gff for
BO07246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15141-PA | 1..914 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:49 Download gff for
BO07246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15141-PA | 1..914 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:10:58 Download gff for
BO07246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15141-RA | 133..1054 | 9..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:39:19 Download gff for
BO07246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15141-RA | 133..1054 | 9..927 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:39:19 Download gff for
BO07246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17410773..17411618 | 9..854 | 99 | -> | Plus |
2L | 17412795..17412870 | 855..927 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:10:58 Download gff for
BO07246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17410773..17411618 | 9..854 | 99 | -> | Plus |
arm_2L | 17412795..17412870 | 855..927 | 96 | | Plus |
BO07246.complete Sequence
1246 bp (1246 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630721
> BO07246.complete
GAAGTTATCAGTCGACATGAGCGAGTCGAATGCCACAGATGGTGTCCACG
AGGTTGAGGAGTCCAATCCGCTGGAGCAGTCGACCATTACGATGCTAGAT
GTCCTGGAACAGGAAAAGGAGCTGGAGGACGAGTACGCCGCAGTGCTGGG
CGCCTCCGATGAGAAGTCGTGCACTTACGCCAAGGGCCCCATCGGCCGAC
AGGCTCTGTACTCGTGCCTCACTTGTTGCCCCGAGGCGCGCGAGGATCTG
GACAAGGCCGCAGGAGTCTGCTTGGCCTGCTCCTATCGCTGTCACGAGCA
CCACGAACTGGTGGAGCTCTATACTAAGCGGAATTTCCGCTGCGATTGTC
CCACCCAGCGTCTGGGCAAGTGCTCCCTGAACCCACAAGTCGAGGGCGTT
CAACCACGTAACGTGGGCAATCTGTATAACCAGAACTTCCAGGGGCTGTA
CTGCAAGTGCAAGCGACCCTATCCCGATCCCGATCGCACCGTTGAGGAGG
TTATGCTGCAGTGCGCCATCTGCGAGGACTGGTTCCACTTGCCGCACATG
AAAGCGCCCGGCGCCAGCGACAAGTGGCTGGATGTCTGCAGCGAAATGAT
TTGCGATGGCTGCATGGATGCCAAACCCTTCCTAAAGGACTACACTGGAT
TAGCCCTGCAGCCTGTGCTAGAAGATGCGAAGGAGGACAAGCCGGAGGCT
GACGATAGCCAGCTGAAGAACGAGTTGGACCGCAGCATCTGCGATATCAT
GAAAGTTCCTGAAGGTGAATCTCAGCCAGACGAAGGCGAACCCAGCCAGA
AGCGCGCCAAACTGGACGATTGTCGTCGGCCCAAACCAACCAAGGAGCAT
CAGGGAGCTGCTTTCTGGACAAATGACTGGCGAAAATCACTCTGTCAGTG
CTCCGAATGCCTGTCGCTTTACAAGGAACTTGCCGTGGAGTTTCTGCTGG
ATGTCGAGGATTCGGCTAAGACGTACGAGGAGCGCGGCATGAAGCGGGCT
GAAGAGAATTCCAGTTATGAGCAAGGAATCCGGGCACTGGCCTCCATTGA
CCGGACACAGCAAATCGATGCGATTACCGAATACAATCGCATGAAGGACA
AGCTAAAGGAATACCTGCAGGCATTCGCCGCCAGCAAGAAGGTAGTGACC
GAGGAGGATATCAATCGGTTCTTTGCCGGCATGCGCAATGAGAACAATGC
CAACCTGGGTCAGCCCTATTTCTGTCGCGCAAGCTTTCTAGACCAT
BO07246.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:54:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15141-RA | 1215 | CG15141-PA | 1..1212 | 17..1228 | 6060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:54:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15141-RA | 1683 | CG15141-RA | 138..1352 | 14..1228 | 6075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:54:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17410778..17411619 | 14..855 | 4210 | 100 | Plus |
2L | 23513712 | 2L | 17412790..17413168 | 850..1228 | 1880 | 99.7 | Plus |
Blast to na_te.dros performed 2014-11-28 00:54:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 4857..4906 | 1043..1091 | 121 | 74 | Plus |
BO07246.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:31 Download gff for
BO07246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15141-RA | 1..1215 | 17..1232 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:44 Download gff for
BO07246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15141-RA | 117..1339 | 9..1232 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:33:51 Download gff for
BO07246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15141-RA | 141..1352 | 17..1230 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:32 Download gff for
BO07246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15141-RA | 117..1339 | 9..1232 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:08 Download gff for
BO07246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15141-RA | 141..1352 | 17..1230 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:08 Download gff for
BO07246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17410781..17411618 | 17..854 | 100 | -> | Plus |
2L | 17412795..17413168 | 855..1230 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:33:51 Download gff for
BO07246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17410781..17411618 | 17..854 | 100 | -> | Plus |
arm_2L | 17412795..17413168 | 855..1230 | 99 | | Plus |
BO07246.pep Sequence
Translation from 16 to 1246
> BO07246.pep
MSESNATDGVHEVEESNPLEQSTITMLDVLEQEKELEDEYAAVLGASDEK
SCTYAKGPIGRQALYSCLTCCPEAREDLDKAAGVCLACSYRCHEHHELVE
LYTKRNFRCDCPTQRLGKCSLNPQVEGVQPRNVGNLYNQNFQGLYCKCKR
PYPDPDRTVEEVMLQCAICEDWFHLPHMKAPGASDKWLDVCSEMICDGCM
DAKPFLKDYTGLALQPVLEDAKEDKPEADDSQLKNELDRSICDIMKVPEG
ESQPDEGEPSQKRAKLDDCRRPKPTKEHQGAAFWTNDWRKSLCQCSECLS
LYKELAVEFLLDVEDSAKTYEERGMKRAEENSSYEQGIRALASIDRTQQI
DAITEYNRMKDKLKEYLQAFAASKKVVTEEDINRFFAGMRNENNANLGQP
YFCRASFLDH
BO07246.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15141-PA | 404 | CG15141-PA | 1..404 | 1..404 | 2186 | 100 | Plus |