Clone Sequence Records
BO07249.3prime Sequence
917 bp (759 high quality bases) assembled on 2005-12-04
> BO07249.3prime
ATGGTCTAGAAAGCTTGCATCCTCAAAGGTGATGCGGCCGGGTCCGTGGT
TCTTCATGTATCGCCTGTACGCCTTGTATCGTGGATTCTCCGCCAGCTTC
TTTTTCATCTCCTCTTCCTGTTCTGCCTTCCAGGCGACGAAGTTCTCGCG
CTTCCACAGCTTCAGATGCAGGTACTCCTCGATCAGCTTGTCCTCCTGCG
CCTCGAACTGATGCTGGCCCATGCCCAGGTGCCGGCGGATGAGGTAGAGC
TTCTGCTCGCGGCCATACGGCTGCTTCATTACCGTGTAGCGCCAGAACCA
CTGAGCGTGCCACACGATGAACGAGAGTATCGTGTAGGGGCAGATGATCA
GCTGCACCCACAGCACATCCCAGAGTGTCGGCTTCGCATAGCCGCCCTTA
ACGTCCATCTTCTCCTCGATCACCCGCCGGATGATCCGTTCCAGCTCATC
GCGCTGATCGTTCTTGGACATACGATTCTTGCCCTTCTTCTGGATCTTTT
CCTGGATCTCGTCGCGAGCTATTTCCAGGGCCTGGTTCCTATACTTGGGC
ACCGTGGCAAAGTACTTGATGGCAGAATCGTAGCGCTGCCAGCCGGAATA
GTACTGGATGACGGACACAATGGTTAGGACGACCACGATAACCACGCGCA
CATCCACCTTGGGCGCCACGCGTCGCCGGTAGTAGCGATAGTAATGCGCA
TAGTATGCATCCGGGTTGTCCAGCATGTAATCGTAGTCCGTGCGCGACTC
CTCATCGCGCAGGATCTCGTAGGCGGTGGCCACCAGCTTAAACTGCGTCT
CCGCCGCCGCCTTGGCCTCGGCACCCCGATGCAGATCTGGATGATAGCGC
CTCGCCAGCTGGCGGTATGCTTTGCCGATCTCCGACTTGGACGACTCTCT
GGTGACGCCCAGCACGT
BO07249.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7872-PA | 1002 | CG7872-RA | 101..999 | 917..19 | 4495 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:27:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7872-RA | 1653 | CG7872-RA | 330..1228 | 917..19 | 4495 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:27:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15578534..15579432 | 917..19 | 4495 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 17:27:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 4127..4188 | 211..151 | 127 | 69.4 | Minus |
BO07249.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:28 Download gff for
BO07249.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7872-PA | 101..1002 | 18..917 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:54 Download gff for
BO07249.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7872-PA | 101..1002 | 18..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:05:42 Download gff for
BO07249.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7872-RA | 330..1232 | 13..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:44:43 Download gff for
BO07249.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7872-RA | 330..1232 | 13..917 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:44:43 Download gff for
BO07249.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15578534..15579436 | 13..917 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:05:42 Download gff for
BO07249.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15472567..15473469 | 13..917 | 99 | | Minus |
BO07249.5prime Sequence
852 bp (804 high quality bases) assembled on 2005-12-04
> BO07249.5prime
GAAGTTATCAGTCGACATGCGGACGCACGGACTACGGTTGGTGCTCTTGG
CCCTGCTGCCCACGATGGCCCTGGGCCTGCTAGAGGGCCTGTACTGTGGC
AAGGAAAACTGTTACGACGTGCTGGGCGTCACCAGAGAGTCGTCCAAGTC
GGAGATCGGCAAAGCATACCGCCAGCTGGCGAGGCGCTATCATCCAGATC
TGCATCGGGGTGCCGAGGCCAAGGCGGCGGCGGAGACGCAGTTTAAGCTG
GTGGCCACCGCCTACGAGATCCTGCGCGATGAGGAGTCGCGCACGGACTA
CGATTACATGCTGGACAACCCGGATGCATACTATGCGCATTACTATCGCT
ACTACCGGCGACGCGTGGCGCCCAAGGTGGATGTGCGCGTGGTTATCGTG
GTCGTCCTAACCATTGTGTCCGTCATCCAGTACTATTCCGGCTGGCAGCG
CTACGATTCTGCCATCAAGTACTTTGCCACGGTGCCCAAGTATAGGAACC
AGGCCCTGGAAATAGCTCGCGACGAGATCCAGGAAAAGATCCAGAAGAAG
GGCAAGAATCGTATGTCCAAGAACGATCAGCGCGATGAGCTGGAACGGAT
CATCCGGCGGGTGATCGAGGAGAAGATGGACGTTAAGGGCGGCTATGCGA
AGCCGACACTCTGGGATGTGCTGTGGGTGCAGCTGATCATCTGCCCCTAC
ACGATACTCTCGTTCATCGTGTGGCACGCTCAGTGGTTCTGGCGCTACAC
GGTAATGAAGCAGCCGTATGGCCGCGAGCAGAAGCTCTACCTCATCCGCC
GGCACCTGGGCATGGGCCAGCATCAGTTCGAGGCGCANGAGGACAAGCTG
AT
BO07249.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7872-PA | 1002 | CG7872-RA | 1..836 | 17..852 | 4161 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:28:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7872-RA | 1653 | CG7872-RA | 230..1065 | 17..852 | 4169 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:28:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15578434..15579269 | 17..852 | 4169 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:28:15 has no hits.
BO07249.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:29 Download gff for
BO07249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7872-PA | 1..836 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:56 Download gff for
BO07249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7872-PA | 1..836 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:02:54 Download gff for
BO07249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7872-RA | 230..1065 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:00:25 Download gff for
BO07249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7872-RA | 230..1065 | 17..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:00:25 Download gff for
BO07249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15578434..15579269 | 17..852 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:02:54 Download gff for
BO07249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15472467..15473302 | 17..852 | 99 | | Plus |
BO07249.complete Sequence
1033 bp (1033 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630722
> BO07249.complete
GAAGTTATCAGTCGACATGCGGACGCACGGACTACGGTTGGTGCTCTTGG
CCCTGCTGCCCACGATGGCCCTGGGCCTGCTAGAGGGCCTGTACTGTGGC
AAGGAAAACTGTTACGACGTGCTGGGCGTCACCAGAGAGTCGTCCAAGTC
GGAGATCGGCAAAGCATACCGCCAGCTGGCGAGGCGCTATCATCCAGATC
TGCATCGGGGTGCCGAGGCCAAGGCGGCGGCGGAGACGCAGTTTAAGCTG
GTGGCCACCGCCTACGAGATCCTGCGCGATGAGGAGTCGCGCACGGACTA
CGATTACATGCTGGACAACCCGGATGCATACTATGCGCATTACTATCGCT
ACTACCGGCGACGCGTGGCGCCCAAGGTGGATGTGCGCGTGGTTATCGTG
GTCGTCCTAACCATTGTGTCCGTCATCCAGTACTATTCCGGCTGGCAGCG
CTACGATTCTGCCATCAAGTACTTTGCCACGGTGCCCAAGTATAGGAACC
AGGCCCTGGAAATAGCTCGCGACGAGATCCAGGAAAAGATCCAGAAGAAG
GGCAAGAATCGTATGTCCAAGAACGATCAGCGCGATGAGCTGGAACGGAT
CATCCGGCGGGTGATCGAGGAGAAGATGGACGTTAAGGGCGGCTATGCGA
AGCCGACACTCTGGGATGTGCTGTGGGTGCAGCTGATCATCTGCCCCTAC
ACGATACTCTCGTTCATCGTGTGGCACGCTCAGTGGTTCTGGCGCTACAC
GGTAATGAAGCAGCCGTATGGCCGCGAGCAGAAGCTCTACCTCATCCGCC
GGCACCTGGGCATGGGCCAGCATCAGTTCGAGGCGCAGGAGGACAAGCTG
ATCGAGGAGTACCTGCATCTGAAGCTGTGGAAGCGCGAGAACTTCGTCGC
CTGGAAGGCAGAACAGGAAGAGGAGATGAAAAAGAAGCTGGCGGAGAATC
CACGATACAAGGCGTACAGGCGATACATGAAGAACCACGGACCCGGCCGC
ATCACCTTTGAGGATGCAAGCTTTCTAGACCAT
BO07249.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:44:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7872-RA | 1002 | CG7872-PA | 1..999 | 17..1015 | 4995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:44:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7872-RA | 1653 | CG7872-RA | 230..1228 | 17..1015 | 4995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:44:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15578434..15579432 | 17..1015 | 4995 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 23:44:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 4127..4188 | 823..883 | 127 | 69.4 | Plus |
BO07249.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:33 Download gff for
BO07249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7872-RA | 1..1002 | 17..1016 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:46 Download gff for
BO07249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7872-RA | 345..1347 | 17..1021 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:36:45 Download gff for
BO07249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7872-RA | 230..1228 | 17..1017 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:33 Download gff for
BO07249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7872-RA | 345..1347 | 17..1021 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:12 Download gff for
BO07249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7872-RA | 230..1228 | 17..1017 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:12 Download gff for
BO07249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15578434..15579432 | 17..1017 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:36:45 Download gff for
BO07249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15472467..15473465 | 17..1017 | 99 | | Plus |
BO07249.pep Sequence
Translation from 16 to 1033
> BO07249.pep
MRTHGLRLVLLALLPTMALGLLEGLYCGKENCYDVLGVTRESSKSEIGKA
YRQLARRYHPDLHRGAEAKAAAETQFKLVATAYEILRDEESRTDYDYMLD
NPDAYYAHYYRYYRRRVAPKVDVRVVIVVVLTIVSVIQYYSGWQRYDSAI
KYFATVPKYRNQALEIARDEIQEKIQKKGKNRMSKNDQRDELERIIRRVI
EEKMDVKGGYAKPTLWDVLWVQLIICPYTILSFIVWHAQWFWRYTVMKQP
YGREQKLYLIRRHLGMGQHQFEAQEDKLIEEYLHLKLWKRENFVAWKAEQ
EEEMKKKLAENPRYKAYRRYMKNHGPGRITFEDASFLDH
BO07249.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7872-PA | 333 | CG7872-PA | 1..333 | 1..333 | 1767 | 100 | Plus |
