Clone BO07252 Report

Search the DGRC for BO07252

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:72
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCG7414-RA
Protein status:BO07252.pep: Imported from assembly
Sequenced Size:1948

Clone Sequence Records

BO07252.3prime Sequence

882 bp (817 high quality bases) assembled on 2005-12-04

> BO07252.3prime
ATGGTCTAGAAAGCTTGCGGCAGACTGCTTGAGAGCCTTGAGCTCATCCA
GGTACTGTGCTTCCATCTTAATCTTGTTCAGTTGGTTCAGCTCCAGATTC
TCGCCCTGGCTGCGTCGGACCTTCAGCTTCTTAATGTCCGACAGCTTCTT
GGCGACGCTGCGAATCTTGCGCTCCTTATCGCTGATGTGCTGGCCATTGG
GATGACCCTGTCCATACGAATTCGGTGGCTGATCGGCAGCGTTATCTGGC
TGGTACTTCTGTCTGGGAGTATGCTGCGGCTTCCGCTCCTCTGCAGCCAC
GAAAACGGGCGACTGGCGAGCAACCGGAGCAGCTTGATCGACCACCTCAG
TCGGGGCAGAATCCGCATCGCCACCATTTACAACGTTCACATCCTTCCTA
GCGCTTCGCTGTTTGTTCTTGTTATTCCTCTTGTTTCCGTTGACACCACC
TGCTGCTGCCGTTGGTGCCAGTCCGGGAATACTCGGCTGGGGCAGATACT
TTTCCGGATTCTTGCCCTCCTTCAACAAGCGCAGATGAGGCGGTGTGTAA
GCCTTCTTGCTGGCCTCTGGCTGGCTGGACTTGATGCCCTCGTGCTTGGC
CTTGGTAATCTTGGGCTCGCTGAACGTCTTATCCGCAAACTGCTGCCACT
CAATTCCCAACAATTCCTGACCCTGGGGCCACATGGTCTCGTGGAGCAGG
GCCCCGGAGTAGTGGTACACCTTGAACCCATTGCTAATGCGCAGCCTGGG
CGCGGTGGTGGCCGTGACGAACCACTCGCCATTGGGATGCCACTCAAAAA
CCGTGGTATCAGCACACTTGAGGTTAGCCAGCTTCTCGCGCTTGGACACA
TCCCACACCTCGACGGCTCCAGGCAGATTGCC

BO07252.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7414-PA 1917 CG7414-RA 1051..1914 882..19 4320 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG7414-RD 2319 CG7414-RD 1124..1987 882..19 4320 100 Minus
CG7414-RA 2544 CG7414-RA 1349..2212 882..19 4320 100 Minus
CG7414-RE 2602 CG7414-RE 1124..1558 882..448 2175 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:57:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21827090..21827524 453..19 2175 100 Minus
3L 28110227 3L 21826474..21826754 728..448 1405 100 Minus
3L 28110227 3L 21826260..21826416 882..726 785 100 Minus
Blast to na_te.dros performed on 2015-02-12 09:57:24 has no hits.

BO07252.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:30 Download gff for BO07252.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7414-PA 1051..1917 18..882 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:56 Download gff for BO07252.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7414-PA 1051..1917 18..882 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:44:16 Download gff for BO07252.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7414-RA 1349..2212 19..882 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:56:20 Download gff for BO07252.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7414-RA 1349..2212 19..882 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:56:20 Download gff for BO07252.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21826260..21826414 728..882 100 -> Minus
3L 21826475..21826752 450..727 100 -> Minus
3L 21827094..21827527 14..449 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:44:16 Download gff for BO07252.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21819360..21819514 728..882 100 -> Minus
arm_3L 21819575..21819852 450..727 100 -> Minus
arm_3L 21820194..21820627 14..449 99 -> Minus

BO07252.5prime Sequence

900 bp (846 high quality bases) assembled on 2005-12-04

> BO07252.5prime
GAAGTTATCAGTCGACATGGCTGCAGCTGCGGATCTGGTTGTTCCTACCC
TTGCCATTCGCTCTAGCGTGGCCGTGGAATTGTGGTCCTCGGCGGGCTCC
AAGCAGCCCTTCGAGCACAAGCCCCACCTGCCGCGCGAGGAGACGAAGAG
CTCGCGCTCGATCTGCTTCAGCTCCAACGGCCGGTACTTCGCCTACTCCA
ACGGGCAGGAAGTCAAGGTGCTCCAGGCCAGCCGGGACAGCGCAGCCAGC
TGGCCAGTGATATGCGTGCTGCCCAGGCCGAAAGCCTTCTACCTCCAATT
CTCGCCACGTGGCAGCTACCTGTGCACCTGGGAGCACTATGCCATCACTA
AGGACCGGCCGGAGGGGTCACCCAATCTGCTCGTCTACGAAGTGGCCACC
GGTGTCGAAGTGTTTGCCATCGTCCAGAAGAACCAAGCGGACTGGCAGCC
CTCCTGGTCGGCGGACGAGTCCATCTTCGCTTTGGTAGTCGGCGGCGAGG
CACTCTTCTATGACCTCGGCGAGGGAGCGGAGAAGGGATTCGCCACCACA
TCGCGCAAGATAGGAGGCAGTCGCGGCGGTATGCTGTCGCTGGGTCCCGG
TAACTGCCCCCCGTTCCTTGCGTTCTACACGCCGGGAGCCAAGGGCGCTC
CGTCCATGTGCAAGCTCTACAAGTACCCGGCGCTTGGCCAGAATCAGACC
GTAGCCTGCAAGAGCTTTTTCCAGGCGGATCGCGTCGAGATGTTGTGGAA
CAAGCGAGGCAGCGGACTGCTTCTCCTAACCAGCACGGAAGTGGATAAGA
GCGGTGCCTCCTACTACGGCAACCAGGCGGTGCACTTCATGGCAACCAAG
GGCGACACCTGCTCAGTGCCCCTCTCTAAGGAGGGGACGGTGCATTGTGT

BO07252.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7414-PA 1917 CG7414-RA 1..884 17..900 4370 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG7414-RE 2602 CG7414-RE 74..957 17..900 4390 99.8 Plus
CG7414-RD 2319 CG7414-RD 74..957 17..900 4390 99.8 Plus
CG7414-RC 2827 CG7414-RC 299..1182 17..900 4390 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:43:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21825250..21826093 57..900 4190 99.8 Plus
3L 28110227 3L 21825038..21825077 17..56 200 100 Plus
Blast to na_te.dros performed on 2015-02-13 12:43:01 has no hits.

BO07252.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:31 Download gff for BO07252.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7414-PA 1..884 17..900 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:58 Download gff for BO07252.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7414-PA 1..884 17..900 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:04:03 Download gff for BO07252.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7414-RC 294..1182 10..900 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:21:29 Download gff for BO07252.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7414-RC 294..1182 10..900 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:21:29 Download gff for BO07252.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21825033..21825077 10..56 93 -> Plus
3L 21825250..21826093 57..900 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:04:03 Download gff for BO07252.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21818133..21818177 10..56 93 -> Plus
arm_3L 21818350..21819193 57..900 99   Plus

BO07252.complete Sequence

1948 bp assembled on 2008-08-14

GenBank Submission: FJ630723

> BO07252.complete
GAAGTTATCAGTCGACATGGCTGCAGCTGCGGATCTGGTTGTTCCTACCC
TTGCCATTCGCTCTAGCGTGGCCGTGGAATTGTGGTCCTCGGCGGGCTCC
AAGCAGCCCTTCGAGCACAAGCCCCACCTGCCGCGCGAGGAGACGAAGAG
CTCGCGCTCGATCTGCTTCAGCTCCAACGGCCGGTACTTCGCCTACTCCA
ACGGGCAGGAAGTCAAGGTGCTCCAGGCCAGCCGGGACAGCGCAGCCAGC
TGGCCAGTGATATGCGTGCTGCCCAGGCCGAAAGCCTTCTACCTCCAATT
CTCGCCACGTGGCAGCTACCTGTGCACCTGGGAGCACTATGCCATCACTA
AGGACCGGCCGGAGGGGTCACCCAATCTGCTCGTCTACGAAGTGGCCACC
GGTGTCGAAGTGTTTGCCATCGTCCAGAAGAACCAAGCGGACTGGCAGCC
CTCCTGGTCGGCGGACGAGTCCATCTTCGCTTTGGTAGTCGGCGGCGAGG
CACTCTTCTATGACCTCGGCGAGGGAGCGGAGAAGGGATTCGCCACCACA
TCGCGCAAGATAGGAGGCAGTCGCGGCGGTATGCTGTCGCTGGGTCCCGG
TAACTGCCCCCCGTTCCTTGCGTTCTACACGCCGGGAGCCAAGGGCGCTC
CGTCCATGTGCAAGCTCTACAAGTACCCGGCGCTTGGCCAGAATCAGACC
GTAGCCTGCAAGAGCTTTTTCCAGGCGGATCGCGTCGAGATGTTGTGGAA
CAAGCGAGGCAGCGGACTGCTTCTCCTAACCAGCACGGAAGTGGATAAGA
GCGGTGCCTCCTACTACGGCAACCAGGCGGTGCACTTCATGGCAACCAAG
GGCGACACCTGCTCAGTGCCCCTCTCTAAGGAGGGACCGGTGCATTGTGT
CAAGTGGAGTCCTAAGGCAACTGAGTTTGTAGTCGTATACGGCTTCATGC
CATCCAAGGCTGCTCTCTACAACCTCAAGTGCGACGTAGTCTTCGACTTC
GGTGAGGGTCCACGCAACTGTGCCTACTTCAATCCATTTGGCAACCTCAT
AGCTCTCGCCGGCTTCGGCAATCTGCCTGGAGCCGTCGAGGTGTGGGATG
TGTCCAAGCGCGAGAAGCTGGCTAACCTCAAGTGTGCTGATACCACGGTT
TTTGAGTGGCATCCCAATGGCGAGTGGTTCGTCACGGCCACCACCGCGCC
CAGGCTGCGCATTAGCAATGGGTTCAAGGTGTACCACTACTCCGGGGCCC
TGCTCCACGAGACCATGTGGCCCCAGGGTCAGGAATTGTTGGGAATTGAG
TGGCAGCAGTTTGCGGATAAGACGTTCAGCGAGCCCAAGATTACCAAGGC
CAAGCACGAGGGCATCAAGTCCAGCCAGCCAGAGGCCAGCAAGAAGGCTT
ACACACCGCCTCATCTGCGCTTGTTGAAGGAGGGCAAGAATCCGGAAAAG
TATCTGCCCCAGCCGAGTATTCCCGGACTGGCACCAACGGCAGCAGCAGG
TGGTGTCAACGGAAACAAGAGGAATAACAAGAACAAACAGCGAAGCGCTA
GGAAGGATGTGAACGTTGTAAATGGTGGCGATGCGGATTCTGCCCCGACT
GAGGTGGTCGATCAAGCTGCTCCGGTTGCTCGCCAGTCGCCCGTTTTCGT
GGCTGCAGAGGAGCGGAAGCCGCAGCATACTCCCAGACAGAAGTACCAGC
CAGATAACGCTGCCGATCAGCCACCGAATTCGTATGGACAGGGTCATCCC
AATGGCCAGCACATCAGCGATAAGGAGCGCAAGATTCGCAGCGTCGCCAA
GAAGCTGTCGGACATTAAGAAGCTGAAGGTCCGACGCAGCCAGGGCGAGA
ATCTGGAGCTGAACCAACTGAACAAGATTAAGATGGAAGCACAGTACCTG
GATGAGCTCAAGGCTCTCAAGCAGTCTGCCGCAAGCTTTCTAGACCAT

BO07252.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:01:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG7414-RD 1917 CG7414-PD 1..1914 17..1930 9570 100 Plus
CG7414-RA 1917 CG7414-PA 1..1914 17..1930 9570 100 Plus
CG7414-RE 1668 CG7414-PE 1..1485 17..1501 7425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:01:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG7414-RD 2319 CG7414-RD 74..1987 17..1930 9570 100 Plus
CG7414-RA 2544 CG7414-RA 299..2212 17..1930 9570 100 Plus
CG7414-RE 2602 CG7414-RE 74..1558 17..1501 7425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:01:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21825250..21826416 57..1223 5835 100 Plus
3L 28110227 3L 21827090..21827524 1496..1930 2175 100 Plus
3L 28110227 3L 21826474..21826754 1221..1501 1405 100 Plus
3L 28110227 3L 21825038..21825077 17..56 200 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:01:07 has no hits.

BO07252.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:18 Download gff for BO07252.complete
Subject Subject Range Query Range Percent Splice Strand
CG7414-RA 215..2133 10..1930 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:26:16 Download gff for BO07252.complete
Subject Subject Range Query Range Percent Splice Strand
CG7414-RA 299..2212 17..1932 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:45 Download gff for BO07252.complete
Subject Subject Range Query Range Percent Splice Strand
CG7414-RA 220..2133 17..1932 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:22 Download gff for BO07252.complete
Subject Subject Range Query Range Percent Splice Strand
CG7414-RA 299..2212 17..1932 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:22 Download gff for BO07252.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21825038..21825077 17..56 100 -> Plus
3L 21825250..21826414 57..1221 100 -> Plus
3L 21826475..21826752 1222..1499 100 -> Plus
3L 21827094..21827524 1500..1932 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:26:16 Download gff for BO07252.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21818138..21818177 17..56 100 -> Plus
arm_3L 21818350..21819514 57..1221 100 -> Plus
arm_3L 21819575..21819852 1222..1499 100 -> Plus
arm_3L 21820194..21820624 1500..1932 99   Plus

BO07252.pep Sequence

Translation from 16 to 1948

> BO07252.pep
MAAAADLVVPTLAIRSSVAVELWSSAGSKQPFEHKPHLPREETKSSRSIC
FSSNGRYFAYSNGQEVKVLQASRDSAASWPVICVLPRPKAFYLQFSPRGS
YLCTWEHYAITKDRPEGSPNLLVYEVATGVEVFAIVQKNQADWQPSWSAD
ESIFALVVGGEALFYDLGEGAEKGFATTSRKIGGSRGGMLSLGPGNCPPF
LAFYTPGAKGAPSMCKLYKYPALGQNQTVACKSFFQADRVEMLWNKRGSG
LLLLTSTEVDKSGASYYGNQAVHFMATKGDTCSVPLSKEGPVHCVKWSPK
ATEFVVVYGFMPSKAALYNLKCDVVFDFGEGPRNCAYFNPFGNLIALAGF
GNLPGAVEVWDVSKREKLANLKCADTTVFEWHPNGEWFVTATTAPRLRIS
NGFKVYHYSGALLHETMWPQGQELLGIEWQQFADKTFSEPKITKAKHEGI
KSSQPEASKKAYTPPHLRLLKEGKNPEKYLPQPSIPGLAPTAAAGGVNGN
KRNNKNKQRSARKDVNVVNGGDADSAPTEVVDQAAPVARQSPVFVAAEER
KPQHTPRQKYQPDNAADQPPNSYGQGHPNGQHISDKERKIRSVAKKLSDI
KKLKVRRSQGENLELNQLNKIKMEAQYLDELKALKQSAASFLDH

BO07252.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG7414-PD 638 CG7414-PD 1..638 1..638 3385 100 Plus
CG7414-PA 638 CG7414-PA 1..638 1..638 3385 100 Plus
CG7414-PE 555 CG7414-PE 1..495 1..495 2652 100 Plus
CG7414-PC 555 CG7414-PC 1..495 1..495 2652 100 Plus