Clone Sequence Records
BO07252.3prime Sequence
882 bp (817 high quality bases) assembled on 2005-12-04
> BO07252.3prime
ATGGTCTAGAAAGCTTGCGGCAGACTGCTTGAGAGCCTTGAGCTCATCCA
GGTACTGTGCTTCCATCTTAATCTTGTTCAGTTGGTTCAGCTCCAGATTC
TCGCCCTGGCTGCGTCGGACCTTCAGCTTCTTAATGTCCGACAGCTTCTT
GGCGACGCTGCGAATCTTGCGCTCCTTATCGCTGATGTGCTGGCCATTGG
GATGACCCTGTCCATACGAATTCGGTGGCTGATCGGCAGCGTTATCTGGC
TGGTACTTCTGTCTGGGAGTATGCTGCGGCTTCCGCTCCTCTGCAGCCAC
GAAAACGGGCGACTGGCGAGCAACCGGAGCAGCTTGATCGACCACCTCAG
TCGGGGCAGAATCCGCATCGCCACCATTTACAACGTTCACATCCTTCCTA
GCGCTTCGCTGTTTGTTCTTGTTATTCCTCTTGTTTCCGTTGACACCACC
TGCTGCTGCCGTTGGTGCCAGTCCGGGAATACTCGGCTGGGGCAGATACT
TTTCCGGATTCTTGCCCTCCTTCAACAAGCGCAGATGAGGCGGTGTGTAA
GCCTTCTTGCTGGCCTCTGGCTGGCTGGACTTGATGCCCTCGTGCTTGGC
CTTGGTAATCTTGGGCTCGCTGAACGTCTTATCCGCAAACTGCTGCCACT
CAATTCCCAACAATTCCTGACCCTGGGGCCACATGGTCTCGTGGAGCAGG
GCCCCGGAGTAGTGGTACACCTTGAACCCATTGCTAATGCGCAGCCTGGG
CGCGGTGGTGGCCGTGACGAACCACTCGCCATTGGGATGCCACTCAAAAA
CCGTGGTATCAGCACACTTGAGGTTAGCCAGCTTCTCGCGCTTGGACACA
TCCCACACCTCGACGGCTCCAGGCAGATTGCC
BO07252.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7414-PA | 1917 | CG7414-RA | 1051..1914 | 882..19 | 4320 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:57:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7414-RD | 2319 | CG7414-RD | 1124..1987 | 882..19 | 4320 | 100 | Minus |
CG7414-RA | 2544 | CG7414-RA | 1349..2212 | 882..19 | 4320 | 100 | Minus |
CG7414-RE | 2602 | CG7414-RE | 1124..1558 | 882..448 | 2175 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:57:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21827090..21827524 | 453..19 | 2175 | 100 | Minus |
3L | 28110227 | 3L | 21826474..21826754 | 728..448 | 1405 | 100 | Minus |
3L | 28110227 | 3L | 21826260..21826416 | 882..726 | 785 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 09:57:24 has no hits.
BO07252.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:30 Download gff for
BO07252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7414-PA | 1051..1917 | 18..882 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:56 Download gff for
BO07252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7414-PA | 1051..1917 | 18..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:44:16 Download gff for
BO07252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7414-RA | 1349..2212 | 19..882 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:56:20 Download gff for
BO07252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7414-RA | 1349..2212 | 19..882 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:56:20 Download gff for
BO07252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21826260..21826414 | 728..882 | 100 | -> | Minus |
3L | 21826475..21826752 | 450..727 | 100 | -> | Minus |
3L | 21827094..21827527 | 14..449 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:44:16 Download gff for
BO07252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21819360..21819514 | 728..882 | 100 | -> | Minus |
arm_3L | 21819575..21819852 | 450..727 | 100 | -> | Minus |
arm_3L | 21820194..21820627 | 14..449 | 99 | -> | Minus |
BO07252.5prime Sequence
900 bp (846 high quality bases) assembled on 2005-12-04
> BO07252.5prime
GAAGTTATCAGTCGACATGGCTGCAGCTGCGGATCTGGTTGTTCCTACCC
TTGCCATTCGCTCTAGCGTGGCCGTGGAATTGTGGTCCTCGGCGGGCTCC
AAGCAGCCCTTCGAGCACAAGCCCCACCTGCCGCGCGAGGAGACGAAGAG
CTCGCGCTCGATCTGCTTCAGCTCCAACGGCCGGTACTTCGCCTACTCCA
ACGGGCAGGAAGTCAAGGTGCTCCAGGCCAGCCGGGACAGCGCAGCCAGC
TGGCCAGTGATATGCGTGCTGCCCAGGCCGAAAGCCTTCTACCTCCAATT
CTCGCCACGTGGCAGCTACCTGTGCACCTGGGAGCACTATGCCATCACTA
AGGACCGGCCGGAGGGGTCACCCAATCTGCTCGTCTACGAAGTGGCCACC
GGTGTCGAAGTGTTTGCCATCGTCCAGAAGAACCAAGCGGACTGGCAGCC
CTCCTGGTCGGCGGACGAGTCCATCTTCGCTTTGGTAGTCGGCGGCGAGG
CACTCTTCTATGACCTCGGCGAGGGAGCGGAGAAGGGATTCGCCACCACA
TCGCGCAAGATAGGAGGCAGTCGCGGCGGTATGCTGTCGCTGGGTCCCGG
TAACTGCCCCCCGTTCCTTGCGTTCTACACGCCGGGAGCCAAGGGCGCTC
CGTCCATGTGCAAGCTCTACAAGTACCCGGCGCTTGGCCAGAATCAGACC
GTAGCCTGCAAGAGCTTTTTCCAGGCGGATCGCGTCGAGATGTTGTGGAA
CAAGCGAGGCAGCGGACTGCTTCTCCTAACCAGCACGGAAGTGGATAAGA
GCGGTGCCTCCTACTACGGCAACCAGGCGGTGCACTTCATGGCAACCAAG
GGCGACACCTGCTCAGTGCCCCTCTCTAAGGAGGGGACGGTGCATTGTGT
BO07252.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7414-PA | 1917 | CG7414-RA | 1..884 | 17..900 | 4370 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:43:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7414-RE | 2602 | CG7414-RE | 74..957 | 17..900 | 4390 | 99.8 | Plus |
CG7414-RD | 2319 | CG7414-RD | 74..957 | 17..900 | 4390 | 99.8 | Plus |
CG7414-RC | 2827 | CG7414-RC | 299..1182 | 17..900 | 4390 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:43:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21825250..21826093 | 57..900 | 4190 | 99.8 | Plus |
3L | 28110227 | 3L | 21825038..21825077 | 17..56 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:43:01 has no hits.
BO07252.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:31 Download gff for
BO07252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7414-PA | 1..884 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:58 Download gff for
BO07252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7414-PA | 1..884 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:04:03 Download gff for
BO07252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7414-RC | 294..1182 | 10..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:21:29 Download gff for
BO07252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7414-RC | 294..1182 | 10..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:21:29 Download gff for
BO07252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21825033..21825077 | 10..56 | 93 | -> | Plus |
3L | 21825250..21826093 | 57..900 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:04:03 Download gff for
BO07252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21818133..21818177 | 10..56 | 93 | -> | Plus |
arm_3L | 21818350..21819193 | 57..900 | 99 | | Plus |
BO07252.complete Sequence
1948 bp assembled on 2008-08-14
GenBank Submission: FJ630723
> BO07252.complete
GAAGTTATCAGTCGACATGGCTGCAGCTGCGGATCTGGTTGTTCCTACCC
TTGCCATTCGCTCTAGCGTGGCCGTGGAATTGTGGTCCTCGGCGGGCTCC
AAGCAGCCCTTCGAGCACAAGCCCCACCTGCCGCGCGAGGAGACGAAGAG
CTCGCGCTCGATCTGCTTCAGCTCCAACGGCCGGTACTTCGCCTACTCCA
ACGGGCAGGAAGTCAAGGTGCTCCAGGCCAGCCGGGACAGCGCAGCCAGC
TGGCCAGTGATATGCGTGCTGCCCAGGCCGAAAGCCTTCTACCTCCAATT
CTCGCCACGTGGCAGCTACCTGTGCACCTGGGAGCACTATGCCATCACTA
AGGACCGGCCGGAGGGGTCACCCAATCTGCTCGTCTACGAAGTGGCCACC
GGTGTCGAAGTGTTTGCCATCGTCCAGAAGAACCAAGCGGACTGGCAGCC
CTCCTGGTCGGCGGACGAGTCCATCTTCGCTTTGGTAGTCGGCGGCGAGG
CACTCTTCTATGACCTCGGCGAGGGAGCGGAGAAGGGATTCGCCACCACA
TCGCGCAAGATAGGAGGCAGTCGCGGCGGTATGCTGTCGCTGGGTCCCGG
TAACTGCCCCCCGTTCCTTGCGTTCTACACGCCGGGAGCCAAGGGCGCTC
CGTCCATGTGCAAGCTCTACAAGTACCCGGCGCTTGGCCAGAATCAGACC
GTAGCCTGCAAGAGCTTTTTCCAGGCGGATCGCGTCGAGATGTTGTGGAA
CAAGCGAGGCAGCGGACTGCTTCTCCTAACCAGCACGGAAGTGGATAAGA
GCGGTGCCTCCTACTACGGCAACCAGGCGGTGCACTTCATGGCAACCAAG
GGCGACACCTGCTCAGTGCCCCTCTCTAAGGAGGGACCGGTGCATTGTGT
CAAGTGGAGTCCTAAGGCAACTGAGTTTGTAGTCGTATACGGCTTCATGC
CATCCAAGGCTGCTCTCTACAACCTCAAGTGCGACGTAGTCTTCGACTTC
GGTGAGGGTCCACGCAACTGTGCCTACTTCAATCCATTTGGCAACCTCAT
AGCTCTCGCCGGCTTCGGCAATCTGCCTGGAGCCGTCGAGGTGTGGGATG
TGTCCAAGCGCGAGAAGCTGGCTAACCTCAAGTGTGCTGATACCACGGTT
TTTGAGTGGCATCCCAATGGCGAGTGGTTCGTCACGGCCACCACCGCGCC
CAGGCTGCGCATTAGCAATGGGTTCAAGGTGTACCACTACTCCGGGGCCC
TGCTCCACGAGACCATGTGGCCCCAGGGTCAGGAATTGTTGGGAATTGAG
TGGCAGCAGTTTGCGGATAAGACGTTCAGCGAGCCCAAGATTACCAAGGC
CAAGCACGAGGGCATCAAGTCCAGCCAGCCAGAGGCCAGCAAGAAGGCTT
ACACACCGCCTCATCTGCGCTTGTTGAAGGAGGGCAAGAATCCGGAAAAG
TATCTGCCCCAGCCGAGTATTCCCGGACTGGCACCAACGGCAGCAGCAGG
TGGTGTCAACGGAAACAAGAGGAATAACAAGAACAAACAGCGAAGCGCTA
GGAAGGATGTGAACGTTGTAAATGGTGGCGATGCGGATTCTGCCCCGACT
GAGGTGGTCGATCAAGCTGCTCCGGTTGCTCGCCAGTCGCCCGTTTTCGT
GGCTGCAGAGGAGCGGAAGCCGCAGCATACTCCCAGACAGAAGTACCAGC
CAGATAACGCTGCCGATCAGCCACCGAATTCGTATGGACAGGGTCATCCC
AATGGCCAGCACATCAGCGATAAGGAGCGCAAGATTCGCAGCGTCGCCAA
GAAGCTGTCGGACATTAAGAAGCTGAAGGTCCGACGCAGCCAGGGCGAGA
ATCTGGAGCTGAACCAACTGAACAAGATTAAGATGGAAGCACAGTACCTG
GATGAGCTCAAGGCTCTCAAGCAGTCTGCCGCAAGCTTTCTAGACCAT
BO07252.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:01:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7414-RD | 1917 | CG7414-PD | 1..1914 | 17..1930 | 9570 | 100 | Plus |
CG7414-RA | 1917 | CG7414-PA | 1..1914 | 17..1930 | 9570 | 100 | Plus |
CG7414-RE | 1668 | CG7414-PE | 1..1485 | 17..1501 | 7425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:01:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7414-RD | 2319 | CG7414-RD | 74..1987 | 17..1930 | 9570 | 100 | Plus |
CG7414-RA | 2544 | CG7414-RA | 299..2212 | 17..1930 | 9570 | 100 | Plus |
CG7414-RE | 2602 | CG7414-RE | 74..1558 | 17..1501 | 7425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:01:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21825250..21826416 | 57..1223 | 5835 | 100 | Plus |
3L | 28110227 | 3L | 21827090..21827524 | 1496..1930 | 2175 | 100 | Plus |
3L | 28110227 | 3L | 21826474..21826754 | 1221..1501 | 1405 | 100 | Plus |
3L | 28110227 | 3L | 21825038..21825077 | 17..56 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:01:07 has no hits.
BO07252.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:18 Download gff for
BO07252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7414-RA | 215..2133 | 10..1930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:26:16 Download gff for
BO07252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7414-RA | 299..2212 | 17..1932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:45 Download gff for
BO07252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7414-RA | 220..2133 | 17..1932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:22 Download gff for
BO07252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7414-RA | 299..2212 | 17..1932 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:22 Download gff for
BO07252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21825038..21825077 | 17..56 | 100 | -> | Plus |
3L | 21825250..21826414 | 57..1221 | 100 | -> | Plus |
3L | 21826475..21826752 | 1222..1499 | 100 | -> | Plus |
3L | 21827094..21827524 | 1500..1932 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:26:16 Download gff for
BO07252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21818138..21818177 | 17..56 | 100 | -> | Plus |
arm_3L | 21818350..21819514 | 57..1221 | 100 | -> | Plus |
arm_3L | 21819575..21819852 | 1222..1499 | 100 | -> | Plus |
arm_3L | 21820194..21820624 | 1500..1932 | 99 | | Plus |
BO07252.pep Sequence
Translation from 16 to 1948
> BO07252.pep
MAAAADLVVPTLAIRSSVAVELWSSAGSKQPFEHKPHLPREETKSSRSIC
FSSNGRYFAYSNGQEVKVLQASRDSAASWPVICVLPRPKAFYLQFSPRGS
YLCTWEHYAITKDRPEGSPNLLVYEVATGVEVFAIVQKNQADWQPSWSAD
ESIFALVVGGEALFYDLGEGAEKGFATTSRKIGGSRGGMLSLGPGNCPPF
LAFYTPGAKGAPSMCKLYKYPALGQNQTVACKSFFQADRVEMLWNKRGSG
LLLLTSTEVDKSGASYYGNQAVHFMATKGDTCSVPLSKEGPVHCVKWSPK
ATEFVVVYGFMPSKAALYNLKCDVVFDFGEGPRNCAYFNPFGNLIALAGF
GNLPGAVEVWDVSKREKLANLKCADTTVFEWHPNGEWFVTATTAPRLRIS
NGFKVYHYSGALLHETMWPQGQELLGIEWQQFADKTFSEPKITKAKHEGI
KSSQPEASKKAYTPPHLRLLKEGKNPEKYLPQPSIPGLAPTAAAGGVNGN
KRNNKNKQRSARKDVNVVNGGDADSAPTEVVDQAAPVARQSPVFVAAEER
KPQHTPRQKYQPDNAADQPPNSYGQGHPNGQHISDKERKIRSVAKKLSDI
KKLKVRRSQGENLELNQLNKIKMEAQYLDELKALKQSAASFLDH
BO07252.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:44:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7414-PD | 638 | CG7414-PD | 1..638 | 1..638 | 3385 | 100 | Plus |
CG7414-PA | 638 | CG7414-PA | 1..638 | 1..638 | 3385 | 100 | Plus |
CG7414-PE | 555 | CG7414-PE | 1..495 | 1..495 | 2652 | 100 | Plus |
CG7414-PC | 555 | CG7414-PC | 1..495 | 1..495 | 2652 | 100 | Plus |