Clone BO07253 Report

Search the DGRC for BO07253

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:72
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptCG12267-RA
Protein status:BO07253.pep: validated full length
Sequenced Size:1600

Clone Sequence Records

BO07253.3prime Sequence

938 bp (811 high quality bases) assembled on 2005-12-04

> BO07253.3prime
ATGGTCTAGAAAGCTTGCTTTAAATTTACGAATACCCGTTGGCAGCGTAG
TGCAATGATGCTGATACATTTGCAGAAGAAAGATTGTATCGTCTAGGGTC
AGTTCAGCTTTTGACAAGGTCTTTATGCGATTTTTCACCTTATTAAGGAT
CTCGCATTCCGGCGGCGTGAAAGTCTCAACAATCTCTGCGATATACTCGT
CCGTCTCTCCACGTTCCTTCATGGCCTCTACGATGCTGTCCAGCCTTTGT
GATTTTTCAATTAGGCCCTTGTGCTCATTTTTTTCGAAGTTAGATCGCTC
TATTGTGTTATAAAGGGATTTGTAGCTGGCATCAAGCAGCATTCTCACGG
TATCTTTCTCCTTGACCTGGAAGAGGTAAAATGCCTTTGCGGGGCCATTA
CTGCCTCCGCCAGGCTTCTTAATAATCTTGACATGAATAAACTGTTCCTG
GAACAAATTATACGCCAGCGACTTGGCCTCTTTGGATGGGATCATGGCCT
CCTTTTGCAGGTCCTCCTGTTCTATGTATTTCTTGCATCGAATCACTCGA
AATATTCGGGCTGCCTTTGAGCCAAATCGTTCCGTGATGACACACTCCAC
ACAAGCAAAGGCCAGCGACTCGAAGGCATGTTCCATATCCACCACATACA
CACCACCACCCATGTCGCCAACTCTTCGAAAGAATCCCAGTGAGTCCTCA
GTCAATAGGCTTATGTACTGGTCCAAGTACTTCATGAGATCCAGGTTATT
CGATTTTCTTTCAATAGCCTGTTTAATTTCAACGAAAGTTATTTGATTGG
AGAGTTTTCTTTCCCACGGATCAGTTGTGTTATACATAATCTTTAATATG
AATTTGAAGCACTCTGCAGCATTTTCACCCAGTTTTCGCTTCATAGCATC
CACCATGATGGTGTCTCGAAAGTCTTGATGAAAGCGAT

BO07253.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG12267-PA 1569 CG12267-RA 647..1566 938..19 4550 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:57:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG12267-RB 1650 CG12267-RB 712..1631 938..19 4570 99.8 Minus
CG12267-RA 1592 CG12267-RA 654..1573 938..19 4570 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:57:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12461601..12461950 701..352 1750 100 Minus
3R 32079331 3R 12462009..12462176 351..184 840 100 Minus
3R 32079331 3R 12462233..12462399 185..19 835 100 Minus
3R 32079331 3R 12461244..12461374 938..808 625 98.5 Minus
3R 32079331 3R 12461438..12461548 807..697 540 99.1 Minus
Blast to na_te.dros performed on 2015-02-12 09:57:31 has no hits.

BO07253.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:32 Download gff for BO07253.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12267-PA 647..1569 15..938 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:59 Download gff for BO07253.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12267-PA 647..1569 15..938 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:44:17 Download gff for BO07253.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12267-RA 654..1579 11..938 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:56:27 Download gff for BO07253.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12267-RA 654..1579 11..938 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:56:27 Download gff for BO07253.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12461244..12461374 808..938 98 -> Minus
3R 12461438..12461543 702..807 100 -> Minus
3R 12461601..12461950 352..701 100 -> Minus
3R 12462009..12462176 184..351 100 -> Minus
3R 12462235..12462405 11..183 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:44:17 Download gff for BO07253.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8286966..8287096 808..938 98 -> Minus
arm_3R 8287160..8287265 702..807 100 -> Minus
arm_3R 8287323..8287672 352..701 100 -> Minus
arm_3R 8287731..8287898 184..351 100 -> Minus
arm_3R 8287957..8288127 11..183 97   Minus

BO07253.5prime Sequence

847 bp (782 high quality bases) assembled on 2005-12-04

> BO07253.5prime
GAAGTTATCAGTCGACATGTCAGCCGACTACTCCCATCTGAGCTCCGCCA
TCCTGGAGCAGTGCTTTGGCAAGGTGGTGCAGGCGGTGGCCGACTGCCTC
TTTTCGGCCACCACGAGGACCCTGGGACAGATCACCAGTGCCACCAAGTT
GTCGAGGAAGGAAGTGGCATTTGCGCTGGCGGTGCTGGTCAAGTTCAGGC
TGGTGGACTTTGCCGCCTCCAAGGCAAACCCCTTCCTGGCGGAGTACGCC
CTCCGGCGCGAGGATGTTCTCTGCCTCCTAAGGTATCCTCGTTACGTTCA
CCTGGTGCAAACCAAGTACGGAAATGTGGGTGCTTCCATTTCGGAGGAGT
TGATTAATTCTGGATCCGATACGGCAACTGGAATTCTGCTAAAATGCCTA
GCCGAGAATGAAAACAAGGCAGAAAGTCCGGAGTCCTACCGCAACACCTT
TCTCGAAATGATCACCGATCACTATATCATCAAGAGACCAGAACTGCTGG
TGGGCGACGACCAGGATGAGAATGTGCCAAAGTTTGAGACCAACGAGTGC
GATTTCTTTAGGCATCCCAATATTGATCTTCAGTTGCTGGCCAAGATACA
AAAAGGAGAAGCCACTCTAGCGGAGGCCAGGGATTCTCACATGGTGTGGC
ACCTGAACCACGATCGCTTTCATCAAGACTTTCGAGACACCATCATGGTG
GATGCTATTGAGCGAAAACTGGGTGAAAATGCTGCAGAGTGCTTCAAATT
CATATTAAAGATTATGTATAACACAACTGATCCGTGGGAAAGAAAACTCT
CCCATCAAATAACTTTCGTTGAAATTAAACAGGCTATTGAAAGAAAA

BO07253.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:58:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG12267-PA 1569 CG12267-RA 1..831 17..847 4130 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:20:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG12267-RB 1650 CG12267-RB 65..896 16..847 4145 99.9 Plus
CG12267-RA 1592 CG12267-RA 7..838 16..847 4145 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12460872..12461374 291..793 2515 100 Plus
3R 32079331 3R 12460528..12460803 16..291 1380 100 Plus
3R 32079331 3R 12461438..12461491 794..847 255 98.1 Plus
Blast to na_te.dros performed on 2015-02-04 20:20:33 has no hits.

BO07253.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:33 Download gff for BO07253.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12267-PA 1..827 17..843 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:54:00 Download gff for BO07253.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12267-PA 1..827 17..843 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:24:39 Download gff for BO07253.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12267-RA 3..834 14..843 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:48:38 Download gff for BO07253.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12267-RA 3..834 14..843 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:48:38 Download gff for BO07253.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12460528..12460803 16..291 100 -> Plus
3R 12460873..12461374 292..793 100 -> Plus
3R 12461438..12461487 794..843 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:24:39 Download gff for BO07253.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8286250..8286525 16..291 100 -> Plus
arm_3R 8286595..8287096 292..793 100 -> Plus
arm_3R 8287160..8287209 794..843 98   Plus

BO07253.complete Sequence

1600 bp (1600 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630724

> BO07253.complete
GAAGTTATCAGTCGACATGTCAGCCGACTACTCCCATCTGAGCTCCGCCA
TCCTGGAGCAGTGCTTTGGCAAGGTGGTGCAGGCGGTGGCCGACTGCCTC
TTTTCGGCCACCACGAGGACCCTGGGACAGATCACCAGTGCCACCAAGTT
GTCGAGGAAGGAAGTGGCATTTGCGCTGGCGGTGCTGGTCAAGTTCAGGC
TGGTGGACTTTGCCGCCTCCAAGGCAAACCCCTTCCTGGCGGAGTACGCC
CTCCGGCGCGAGGATGTTCTCTGCCTCCTAAGGTATCCTCGTTACGTTCA
CCTGGTGCAAACCAAGTACGGAAATGTGGGTGCTTCCATTTCGGAGGAGT
TGATTAATTCTGGATCCGATACGGCAACTGGAATTCTGCTAAAATGCCTA
GCCGAGAATGAAAACAAGGCAGAAAGTCCGGAGTCCTACCGCAACACCTT
TCTCGAAATGATCACCGATCACTATATCATCAAGAGACCAGAACTGCTGG
TGGGCGACGACCAGGATGAGAATGTGCCAAAGTTTGAGACCAACGAGTGC
GATTTCTTTAGGCATCCCAATATTGATCTTCAGTTGCTGGCCAAGATACA
AAAAGGAGAAGCCACTCTAGCGGAGGCCAGGGATTCTCACATGGTGTGGC
ACCTGAACCACGATCGCTTTCATCAAGACTTTCGAGACACCATCATGGTG
GATGCTATTGAGCGAAAACTGGGTGAAAATGCTGCAGAGTGCTTCAAATT
CATATTAAAGATTATGTATAACACAACTGATCCGTGGGAAAGAAAACTCT
CCAATCAAATAACTTTCGTTGAAATTAAACAGGCTATTGAAAGAAAATCG
AATAACCTGGATCTCATGAAGTACTTGGACCAGTACATAAGCCTATTGAC
TGAGGACTCACTGGGATTCTTTCGAAGAGTTGGCGACATGGGTGGTGGTG
TGTATGTGGTGGATATGGAACATGCCTTCGAGTCGCTGGCCTTTGCTTGT
GTGGAGTGTGTCATCACGGAACGATTTGGCTCAAAGGCAGCCCGAATATT
TCGAGTGATTCGATGCAAGAAATACATAGAACAGGAGGACCTGCAAAAGG
AGGCCATGATCCCATCCAAAGAGGCCAAGTCGCTGGCGTATAATTTGTTC
CAGGAACAGTTTATTCATGTCAAGATTATTAAGAAGCCTGGCGGAGGCAG
TAATGGCCCCGCAAAGGCATTTTACCTCTTCCAGGTCAAGGAGAAAGATA
CCGTGAGAATGCTGCTTGATGCCAGCTACAAATCCCTTTATAACACAATA
GAGCGATCTAACTTCGAAAAAAATGAGCACAAGGGCCTAATTGAAAAATC
ACAAAGGCTGGACAGCATCGTAGAGGCCATGAAGGAACGTGGAGAGACGG
ACGAGTATATCGCAGAGATTGTTGAGACTTTCACGCCGCCGGAATGCGAG
ATCCTTAATAAGGTGAAAAATCGCATAAAGACCTTGTCAAAAGCTGAACT
GACCCTAGACGATACAATCTTTCTTCTGCAAATGTATCAGCATCATTGCA
CTACGCTGCCAACGGGTATTCGTAAATTTAAAGCAAGCTTTCTAGACCAT

BO07253.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:57:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG12267-RB 1569 CG12267-PB 1..1566 17..1582 7830 100 Plus
CG12267-RA 1569 CG12267-PA 1..1566 17..1582 7830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG12267-RB 1650 CG12267-RB 65..1631 16..1582 7835 100 Plus
CG12267-RA 1592 CG12267-RA 7..1573 16..1582 7835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:57:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12460872..12461374 291..793 2515 100 Plus
3R 32079331 3R 12461601..12461950 900..1249 1750 100 Plus
3R 32079331 3R 12460528..12460803 16..291 1380 100 Plus
3R 32079331 3R 12462009..12462176 1250..1417 840 100 Plus
3R 32079331 3R 12462233..12462399 1416..1582 835 100 Plus
3R 32079331 3R 12461438..12461548 794..904 540 99.1 Plus
Blast to na_te.dros performed on 2014-11-27 10:57:45 has no hits.

BO07253.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:20 Download gff for BO07253.complete
Subject Subject Range Query Range Percent Splice Strand
CG12267-RA 1..1569 17..1586 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:31 Download gff for BO07253.complete
Subject Subject Range Query Range Percent Splice Strand
CG12267-RA 60..1632 16..1590 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:52:13 Download gff for BO07253.complete
Subject Subject Range Query Range Percent Splice Strand
CG12267-RA 8..1573 17..1584 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:20 Download gff for BO07253.complete
Subject Subject Range Query Range Percent Splice Strand
CG12267-RA 60..1632 16..1590 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:15 Download gff for BO07253.complete
Subject Subject Range Query Range Percent Splice Strand
CG12267-RA 8..1573 17..1584 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:35:15 Download gff for BO07253.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12460529..12460803 17..291 100 -> Plus
3R 12460873..12461374 292..793 100 -> Plus
3R 12461438..12461543 794..899 100 -> Plus
3R 12461601..12461950 900..1249 100 -> Plus
3R 12462009..12462176 1250..1417 100 -> Plus
3R 12462235..12462399 1418..1584 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:52:13 Download gff for BO07253.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8286251..8286525 17..291 100 -> Plus
arm_3R 8286595..8287096 292..793 100 -> Plus
arm_3R 8287160..8287265 794..899 100 -> Plus
arm_3R 8287323..8287672 900..1249 100 -> Plus
arm_3R 8287731..8287898 1250..1417 100 -> Plus
arm_3R 8287957..8288121 1418..1584 98   Plus

BO07253.pep Sequence

Translation from 16 to 1600

> BO07253.pep
MSADYSHLSSAILEQCFGKVVQAVADCLFSATTRTLGQITSATKLSRKEV
AFALAVLVKFRLVDFAASKANPFLAEYALRREDVLCLLRYPRYVHLVQTK
YGNVGASISEELINSGSDTATGILLKCLAENENKAESPESYRNTFLEMIT
DHYIIKRPELLVGDDQDENVPKFETNECDFFRHPNIDLQLLAKIQKGEAT
LAEARDSHMVWHLNHDRFHQDFRDTIMVDAIERKLGENAAECFKFILKIM
YNTTDPWERKLSNQITFVEIKQAIERKSNNLDLMKYLDQYISLLTEDSLG
FFRRVGDMGGGVYVVDMEHAFESLAFACVECVITERFGSKAARIFRVIRC
KKYIEQEDLQKEAMIPSKEAKSLAYNLFQEQFIHVKIIKKPGGGSNGPAK
AFYLFQVKEKDTVRMLLDASYKSLYNTIERSNFEKNEHKGLIEKSQRLDS
IVEAMKERGETDEYIAEIVETFTPPECEILNKVKNRIKTLSKAELTLDDT
IFLLQMYQHHCTTLPTGIRKFKASFLDH

BO07253.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG12267-PB 522 CG12267-PB 1..522 1..522 2683 100 Plus
CG12267-PA 522 CG12267-PA 1..522 1..522 2683 100 Plus