Clone Sequence Records
BO07255.3prime Sequence
943 bp (699 high quality bases) assembled on 2005-12-04
> BO07255.3prime
ATGGTCTAGAAAGCTTGCATCTTTTGGTGTAGGATAAAAGATATTGCTAG
CTGTGTGCTCCCGAAAGAACTCTCTGCCATGCTCCTGGTGGTCCTGACGC
GTGGTCAGCGTCTGACCGAAGGTGGGCTCTCCTGCGTGCACACATGCTCC
CAGCCAGGCGCTTAAAGTTGGCTCATCCGACTCGTAGATGGCGAACTTTG
ATTGAAACGGTCGCATTTCCATGAGCTCCTTGATTAGTCGCTCCTTGAGA
CCCTTGAATTGGGCACAACCGCCGGTTAGGTACACGTGCTCAACCAGGCG
CTGCTGCTCAGCGGCGGGAAATAGCTTCAGCACGAATGCTATTAGTTCTG
CTAGCCCCGCCTCTGAGCAACCAATCATGCTGGGCTGGAATAGAACCTCC
GGCACGCGAATGTTCTCAACCCCAAAGTGCAGCTGGTAGTTCTCGGCGGC
ACTCTGTGGCGGAACATTGGAGTTGCCATCGGTGTTGGCATCATAGTGAT
TTAGGATCTTATCGAACTGCATCAACTTTTCGTTATCTGCATCCGAATCG
CTGTCGTCGTTGTAGCGATTGATTCGCTTGTACACATCCCAGTCGTTGTC
GTTCATCCCAAAGCCATCGTCCTCTTCCTCGCCGTTCGCCTTGCGCCGCT
TCTCGTTCTTGGCCAGTGATGAAATGATTCGCATCCGTTCCTGCGCGGCG
TGGGTGTGTCGCTTGGCCTGCTCGGATCGCTGCTGCTGGCGCGCCTGCTT
GCGCCCGAGTATTTTCTCCCGCTTGCCCTGGAGTTCGGCCAACCAGTCCG
CCTGGGACATGCCCTCTGGAGGTTTCGGCATCTTGTTCAGCCTCTCCTGC
TGCTTTGCTGGGCGCGGGCCACTCTGAGCTCTCTCCTGGGCACGCTTANT
ACGCGAGTTTATGGTTGCAATGAGGGGATCCAAAGTCCTCCAT
BO07255.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7940-PA | 1947 | CG7940-RA | 1108..1944 | 855..19 | 4185 | 100 | Minus |
| CG7940-PA | 1947 | CG7940-RA | 1030..1103 | 933..860 | 326 | 97.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:24:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp5-RB | 2080 | CG7940-RB | 1104..2026 | 942..19 | 4524 | 99.5 | Minus |
| Arp5-RA | 2320 | CG7940-RA | 1344..2266 | 942..19 | 4524 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:24:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18186907..18187821 | 933..19 | 4489 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:24:44 has no hits.
BO07255.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:36 Download gff for
BO07255.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7940-PA | 1020..1947 | 15..943 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:54:04 Download gff for
BO07255.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7940-PA | 1020..1947 | 15..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:47:07 Download gff for
BO07255.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp5-RA | 1342..2273 | 10..943 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:51:24 Download gff for
BO07255.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp5-RA | 1342..2273 | 10..943 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:51:24 Download gff for
BO07255.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18186897..18187819 | 18..943 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:47:07 Download gff for
BO07255.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14012619..14013541 | 18..943 | 99 | -> | Minus |
BO07255.5prime Sequence
919 bp (758 high quality bases) assembled on 2005-12-04
> BO07255.5prime
GAAGTTATCAGTCGACATGGCGGGTAAACGTGTTTTGGTCATCGATAATG
GATCCTACGAATGCCGCGTGGGCTGGAGCGACTCCAAGGAGCCGGACTTG
CGGTTCCGCAATGTGCTGACCAAGCCGCGCAAGGATCGCAAAAAGGAAGC
AGCTGCTTCGGAGGGATCCGCATCGCAGACAACAGTGGAGCAATCTGCCG
AGATCCAGGTGGGCAATGACATCACCAACATCGAGGCGGTGCGTGCGCAT
CTGAAGAGTCCATTCGAGCGGAATGTGATAACCAACTGGAATCACCAGGA
GCAGATCTTCGACTACATATTCACCAAGATGGGATTCGATGGACAGGACA
AGATCGACCACCCAATCATCCTCACAGAGGCGCTGGCCAACCCCAACTTT
TGCCGCCAGCAGATGAACGAGCTGCTCTTCGAGTGCTACGGTATTCCGTC
TGTATCCTACGGCATAGATGCGCTCTACAGCTGGAAGCATCATCAGCAAA
AGCAGAAAAATATATCCGATGCCCTGATCATTTCCTTTGGCTACAGCACC
ACCCACGTCATTCCCGTGTTAGATGGCAAACTCCAGCTGGAGCATGTGCG
TCGCCTGAATGTGGGTGGCTACCACATCATCACCTACCTCTTCCGGCTCA
TGCAAATGAAGTATCCCGTCCATCTGAATGCCATCACCATCAGTCGTATG
GAGAAATTGGTCCATGAGCACTGCCACATTGCTGTTGATTACAAGGAGGA
GCTGGTGCAATGGGCCCAGATGGACTATTACGACGAGCACATAATGAAGA
TACAACTGCCGTACAATGCGGTGACCGCCACTAACGCCATGCTAACCGCT
GAGCAGAAGCAGGAGAAGCGTCGCGAGCTGGCACATCGTCTGCTGGACAT
AAAAAAAACCGGGAGCAGG
BO07255.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7940-PA | 1947 | CG7940-RA | 1..892 | 17..908 | 4460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:00:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp5-RB | 2080 | CG7940-RB | 83..986 | 17..919 | 4495 | 99.9 | Plus |
| Arp5-RA | 2320 | CG7940-RA | 323..1226 | 17..919 | 4495 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:00:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18185820..18186314 | 17..511 | 2475 | 100 | Plus |
| 3R | 32079331 | 3R | 18186373..18186781 | 512..919 | 1995 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:00:34 has no hits.
BO07255.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:37 Download gff for
BO07255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7940-PA | 1..904 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:54:06 Download gff for
BO07255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7940-PA | 1..904 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:16:28 Download gff for
BO07255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp5-RA | 320..1226 | 11..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:34:38 Download gff for
BO07255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp5-RA | 320..1226 | 11..919 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:34:38 Download gff for
BO07255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18185817..18186314 | 11..511 | 99 | -> | Plus |
| 3R | 18186373..18186781 | 512..919 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:16:28 Download gff for
BO07255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14011539..14012036 | 11..511 | 99 | -> | Plus |
| arm_3R | 14012095..14012503 | 512..919 | 99 | | Plus |
BO07255.complete Sequence
1978 bp assembled on 2008-08-14
GenBank Submission: KX799153
> BO07255.complete
GAAGTTATCAGTCGACATGGCGGGTAAACGTGTTTTGGTCATCGATAATG
GATCCTACGAATGCCGCGTGGGCTGGAGCGACTCCAAGGAGCCGGACTTG
CGGTTCCGCAATGTGCTGACCAAGCCGCGCAAGGATCGCAAAAAGGAAGC
AGCTGCTTCGGAGGGATCCGCATCGCAGACAACAGTGGAGCAATCTGCCG
AGATCCAGGTGGGCAATGACATCACCAACATCGAGGCGGTGCGTGCGCAT
CTGAAGAGTCCATTCGAGCGGAATGTGATAACCAACTGGAATCACCAGGA
GCAGATCTTCGACTACATATTCACCAAGATGGGATTCGATGGACAGGACA
AGATCGACCACCCAATCATCCTCACAGAGGCGCTGGCCAACCCCAACTTT
TGCCGCCAGCAGATGAACGAGCTGCTCTTCGAGTGCTACGGTATTCCGTC
TGTATCCTACGGCATAGATGCGCTCTACAGCTGGAAGCATCATCAGCAAA
AGCAGAAAAATATATCCGATGCCCTGATCATTTCCTTTGGCTACAGCACC
ACCCACGTCATTCCCGTGTTAGATGGCAAACTCCAGCTGGAGCATGTGCG
TCGCCTGAATGTGGGTGGCTACCACATCATCACCTACCTCTTCCGGCTCA
TGCAAATGAAGTATCCCGTCCATCTGAATGCCATCACCATCAGTCGTATG
GAGAAATTGGTCCATGAGCACTGCCACATTGCTGTTGATTACAAGGAGGA
GCTGGTGCAATGGGCCCAGATGGACTATTACGACGAGCACATAATGAAGA
TACAACTGCCGTACAATGCGGTGACCGCCACTAACGCCATGCTAACCGCT
GAGCAGAAGCAGGAGAAGCGTCGCGAGCTGGCACATCGTCTGCTGGACAT
AAAAAAAAACCGGGAGCAGGAGAAACTGCGCGAGGATGAGCAGCAGTTAT
TCGTCTACAACAAGCTGAGGCAACTGTACGAGCAGAAAAAGCTGGACAAG
TTTGAGCGAGCTCTACAGCAACAGCAGATTGGTACATTGGAGGACTTGGA
TTCCCTCATTGCAACCATAAACTCGCGTATTAAGCGTGCCCAGGAGAGAG
CTCAGAGTGGCCCGCGCCCCAGCAAGCAGCAGGAGAGGCTGAACAAGATG
CCGAAACCTCCAGAGGGCATGTCCCAGGCGGACTGGTTGGCCGAACTCCA
GGGCAAGCGGGAGAAAATACTCGGGCGCAAGCAGGCGCGCCAGCAGCAGC
GATCCGAGCAGGCCAAGCGACACACCCACGCCGCGCAGGAACGGATGCGA
ATCATTTCATCACTGGCCAAGAACGAGAAGCGGCGCAAGGCGAACGGCGA
GGAAGAGGACGATGGCTTTGGGATGAACGACAACGACTGGGATGTGTACA
AGCGAATCAATCGCTACAACGACGACAGCGATTCGGATGCAGATAACGAA
AAGTTGATGCAGTTCGATAAGATCCTAAATCACTATGATGCCAACACCGA
TGGCAACTCCAATGTTCCGCCACAGAGTGCCGCCGAGAACTACCAGCTGC
ACTTTGGGGTTGAGAACATTCGCGTGCCGGAGGTTCTATTCCAGCCCAGC
ATGATTGGTTGCTCAGAGGCGGGGCTAGCAGAACTAATAGCATTCGTGCT
GAAGCTATTTCCCGCCGCTGAGCAGCAGCGCCTGGTTGAGCACGTGTACC
TAACCGGCGGTTGTGCCCAATTCAAGGGTCTCAAGGAGCGACTAATCAAG
GAGCTCATGGAAATGCGACCGTTTCAATCAAAGTTCGCCATCTACGAGTC
GGATGAGCCAACTTTAAGCGCCTGGCTGGGAGCATGTGTGCACGCAGGAG
AGCCCACCTTCGGTCAGACGCTGACCACGCGTCAGGACCACCAGGAGCAT
GGCAGAGAGTTCTTTCGGGAGCACACAGCTAGCAATATCTTTTATCCTAC
ACCAAAAGATGCAAGCTTTCTAGACCAT
BO07255.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp5-RB | 1947 | CG7940-PB | 1..1944 | 17..1960 | 9720 | 100 | Plus |
| Arp5-RA | 1947 | CG7940-PA | 1..1944 | 17..1960 | 9720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:39:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp5-RB | 2080 | CG7940-RB | 83..2026 | 17..1960 | 9720 | 100 | Plus |
| Arp5-RA | 2320 | CG7940-RA | 323..2266 | 17..1960 | 9720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:38:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18186373..18187821 | 512..1960 | 7245 | 100 | Plus |
| 3R | 32079331 | 3R | 18185820..18186314 | 17..511 | 2475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:39:00 has no hits.
BO07255.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:43:17 Download gff for
BO07255.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp5-RA | 299..2252 | 11..1969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:09 Download gff for
BO07255.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp5-RA | 323..2266 | 17..1962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:18 Download gff for
BO07255.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp5-RA | 302..2245 | 17..1962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:44 Download gff for
BO07255.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp5-RA | 323..2266 | 17..1962 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:44 Download gff for
BO07255.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18185820..18186314 | 17..511 | 100 | -> | Plus |
| 3R | 18186373..18187821 | 512..1962 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:09 Download gff for
BO07255.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14011542..14012036 | 17..511 | 100 | -> | Plus |
| arm_3R | 14012095..14013543 | 512..1962 | 99 | | Plus |
BO07255.pep Sequence
Translation from 16 to 1978
> BO07255.pep
MAGKRVLVIDNGSYECRVGWSDSKEPDLRFRNVLTKPRKDRKKEAAASEG
SASQTTVEQSAEIQVGNDITNIEAVRAHLKSPFERNVITNWNHQEQIFDY
IFTKMGFDGQDKIDHPIILTEALANPNFCRQQMNELLFECYGIPSVSYGI
DALYSWKHHQQKQKNISDALIISFGYSTTHVIPVLDGKLQLEHVRRLNVG
GYHIITYLFRLMQMKYPVHLNAITISRMEKLVHEHCHIAVDYKEELVQWA
QMDYYDEHIMKIQLPYNAVTATNAMLTAEQKQEKRRELAHRLLDIKKNRE
QEKLREDEQQLFVYNKLRQLYEQKKLDKFERALQQQQIGTLEDLDSLIAT
INSRIKRAQERAQSGPRPSKQQERLNKMPKPPEGMSQADWLAELQGKREK
ILGRKQARQQQRSEQAKRHTHAAQERMRIISSLAKNEKRRKANGEEEDDG
FGMNDNDWDVYKRINRYNDDSDSDADNEKLMQFDKILNHYDANTDGNSNV
PPQSAAENYQLHFGVENIRVPEVLFQPSMIGCSEAGLAELIAFVLKLFPA
AEQQRLVEHVYLTGGCAQFKGLKERLIKELMEMRPFQSKFAIYESDEPTL
SAWLGACVHAGEPTFGQTLTTRQDHQEHGREFFREHTASNIFYPTPKDAS
FLDH
BO07255.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:03:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp5-PB | 648 | CG7940-PB | 1..648 | 1..648 | 3396 | 100 | Plus |
| Arp5-PA | 648 | CG7940-PA | 1..648 | 1..648 | 3396 | 100 | Plus |
| Arp6-PA | 398 | CG11678-PA | 5..244 | 6..266 | 223 | 26.1 | Plus |
| Act87E-PC | 376 | CG18290-PC | 9..228 | 7..246 | 219 | 22.9 | Plus |
| Act87E-PB | 376 | CG18290-PB | 9..228 | 7..246 | 219 | 22.9 | Plus |
| Arp6-PA | 398 | CG11678-PA | 243..391 | 484..629 | 179 | 30.9 | Plus |
| Act87E-PC | 376 | CG18290-PC | 252..367 | 514..629 | 158 | 29.3 | Plus |
