Clone Sequence Records
BO07259.3prime Sequence
852 bp (851 high quality bases) assembled on 2005-12-04
> BO07259.3prime
ATGGTCTAGAAAGCTTGCCACAATATTGATCTCGATCTTGATGAGCAGCC
GATCGTCGGCGCAGAAGCCCAGCTGTATGATGTTCGATATGTTGGCGTAC
TCGAGGAAACCGAATCCCCGTGTGCTGATCGCTTCGCGTGGCTTGTGGAA
CGCCAGAATCTCCGGCTTGGTCATGATGGTGTCGTGCTGCGACAACGTCG
CATCTGCCGGATGCACCATGCACAACTTGATGCGACCCTTGAAGGGCCAG
TCCAAGTGGTAATCGTTCTCCGACTGCATCAGATGCACATGCAAGCTGAG
CACATGCGGTTTCCGCGGCTGAATGTTCAGCCGCGCACAGAACTTGTAGC
CATGCGGCGAGGTGTAGCACTCGTGCGAGTACACTTGATTGTTGGCATTG
GCCCGCAGGCGAGCCACCAAGGCGCCCAGCTGCTCGATGCGCCACACAAT
CGTGCCATTGCTGTAGCGCGGATCAACGGGCGCCTGCTGGCGTGCCAGAC
GCAGCTGCTTTTGCATATTCTCCAGTCGCGTCTCCTGCTCGCGTGTCCGC
TGTTCCAAAACCACAATTCTCTGGTACATCGTTTGCACAATCTGCTCATC
CACACCATTGGCATATTGCGGCGGTGGCGGCAGCTGCTGCTGGCCATGAC
CATTCTCCACGGCGGCGCCACTTGTGCTGGGCTTGTGTGGCTGCCAGGTG
GCAATGGCTGTCTGCTGGAATGCCTGCAGCATCAGCTGCATGTGATGCGG
CATGTCGGCCTTGAGGTGCTCCTCCAACTGATTGGTCTCTGGTCGGCCCA
CAAAATCGCACTTGATCTTGGCAAACGGGCACTTCTCCTCCTGCGGCTCC
TG
BO07259.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10961-PA | 1428 | Traf2-RA | 592..1425 | 852..19 | 4170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:25:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Traf6-RA | 2788 | CG10961-RA | 717..1550 | 852..19 | 4170 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:25:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8155837..8156670 | 19..852 | 4170 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:25:38 has no hits.
BO07259.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:40 Download gff for
BO07259.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf2-PA | 592..1428 | 16..852 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:54:09 Download gff for
BO07259.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10961-PA | 592..1428 | 16..852 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:47:08 Download gff for
BO07259.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf6-RA | 717..1556 | 11..852 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:51:32 Download gff for
BO07259.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf6-RA | 717..1556 | 11..852 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:51:32 Download gff for
BO07259.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8155831..8156670 | 11..852 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:47:08 Download gff for
BO07259.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8049864..8050703 | 11..852 | 99 | | Plus |
BO07259.5prime Sequence
873 bp (865 high quality bases) assembled on 2005-12-04
> BO07259.5prime
GAAGTTATCAGTCGACATGCAGCGAGTCCAGGCCGACCAAAAGCCAGCCA
GAATGCACCAGCATGCACATACGCATTCGCACGCGCACAGTTTGCAGCAT
GCGGAGGAGAAGGAGCACAATAGCAATGAGATGACGACCAACTTGTCGTC
GACTGGCCGAATTGCGGCCAGTAGCAGTGCCACGCCCAGCGCAGCAGCGG
GAGGCGGGGCCAGCGGAGCACCCACTCCGCCCAAGAGTCTGGCGCTCAAT
CAGAACCATCACTATGCACCCGGTTCGGATACATCCGGGGAACAGGAGGA
GGAGCTGCTGGACTCGCGATACGAGTGCGCCATTTGCATCGATTGGCTAA
ATGAGCCGGTGTTGACGTCGTGCGGCCATCGATTTTGTCGCAGCTGCCTC
ACCGCCTGGATGCAAAAGAACAATCAATGCTGCCCCATGGACAACAAGCG
TCTGTCCGCCGAGCACGACATCTTTCCGGACAACTACACGCGCCGCGAGA
TCGAGCAACTCAAGCGAGATTGCCCCAACTCCTCGCTGGGCTGTTCGGTG
GTTGCCTCGCCCATCGAACTGCATCGCCATCTGCCCAGTTGTCCCTATCG
GCGGCAGCAGGAGCCGCAGGAGGAGAAGTGCCCGTTTGCCAAGATCAAGT
GCGATTTTGTGGGCCGACCAGAGACCAATCAGTTGGAGGAGCACCTCAAG
GCCGACATGCCGCATCACATGCAGCTGATGCTGCAGGCATTCCAGCAGAC
AGCCATTGCCACCTGGCAGCCACACAAGCCCAGCACAAGTGGCGCCGCCG
TGGAGAATGGTCATGGCCAGCAGCAGCTGCCGCCACCGCCGCAATATGCC
AATGGTGTGGATGAGCAGATTGT
BO07259.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10961-PA | 1428 | Traf2-RA | 1..857 | 17..873 | 4285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:55:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Traf6-RA | 2788 | CG10961-RA | 126..982 | 17..873 | 4285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:55:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8156405..8157261 | 873..17 | 4285 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:55:11 has no hits.
BO07259.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:41 Download gff for
BO07259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf2-PA | 1..857 | 17..873 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:54:11 Download gff for
BO07259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10961-PA | 1..857 | 17..873 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:24:35 Download gff for
BO07259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf6-RA | 118..982 | 9..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:04:24 Download gff for
BO07259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf6-RA | 118..982 | 9..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:04:24 Download gff for
BO07259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8156405..8157269 | 9..873 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:24:35 Download gff for
BO07259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8050438..8051302 | 9..873 | 99 | | Minus |
BO07259.complete Sequence
1459 bp (1459 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630725
> BO07259.complete
GAAGTTATCAGTCGACATGCAGCGAGTCCAGGCCGACCAAAAGCCAGCCA
GAATGCACCAGCATGCACATACGCATTCGCACGCGCACAGTTTGCAGCAT
GCGGAGGAGAAGGAGCACAATAGCAATGAGATGACGACCAACTTGTCGTC
GACTGGCCGAATTGCGGCCAGTAGCAGTGCCACGCCCAGCGCAGCAGCGG
GAGGCGGGGCCAGCGGAGCACCCACTCCGCCCAAGAGTCTGGCGCTCAAT
CAGAACCATCACTATGCACCCGGTTCGGATACATCCGGGGAACAGGAGGA
GGAGCTGCTGGACTCGCGATACGAGTGCGCCATTTGCATCGATTGGCTAA
ATGAGCCGGTGTTGACGTCGTGCGGCCATCGATTTTGTCGCAGCTGCCTC
ACCGCCTGGATGCAAAAGAACAATCAATGCTGCCCCATGGACAACAAGCG
TCTGTCCGCCGAGCACGACATCTTTCCGGACAACTACACGCGCCGCGAGA
TCGAGCAACTCAAGCGAGATTGCCCCAACTCCTCGCTGGGCTGTTCGGTG
GTTGCCTCGCCCATCGAACTGCATCGCCATCTGCCCAGTTGTCCCTATCG
GCGGCAGCAGGAGCCGCAGGAGGAGAAGTGCCCGTTTGCCAAGATCAAGT
GCGATTTTGTGGGCCGACCAGAGACCAATCAGTTGGAGGAGCACCTCAAG
GCCGACATGCCGCATCACATGCAGCTGATGCTGCAGGCATTCCAGCAGAC
AGCCATTGCCACCTGGCAGCCACACAAGCCCAGCACAAGTGGCGCCGCCG
TGGAGAATGGTCATGGCCAGCAGCAGCTGCCGCCACCGCCGCAATATGCC
AATGGTGTGGATGAGCAGATTGTGCAAACGATGTACCAGAGAATTGTGGT
TTTGGAACAGCGGACACGCGAGCAGGAGACGCGACTGGAGAATATGCAAA
AGCAGCTGCGTCTGGCACGCCAGCAGGCGCCCGTTGATCCGCGCTACAGC
AATGGCACGATTGTGTGGCGCATCGAGCAGCTGGGCGCCTTGGTGGCTCG
CCTGCGGGCCAATGCCAACAATCAAGTGTACTCGCACGAGTGCTACACCT
CGCCGCATGGCTACAAGTTCTGTGCGCGGCTGAACATTCAGCCGCGGAAA
CCGCATGTGCTCAGCTTGCATGTGCATCTGATGCAGTCGGAGAACGATTA
CCACTTGGACTGGCCCTTCAAGGGTCGCATCAAGTTGTGCATGGTGCATC
CGGCAGATGCGACGTTGTCGCAGCACGACACCATCATGACCAAGCCGGAG
ATTCTGGCGTTCCACAAGCCACGCGAAGCGATCAGCACACGGGGATTCGG
TTTCCTCGAGTACGCCAACATATCGAACATCATACAGCTGGGCTTCTGCG
CCGACGATCGGCTGCTCATCAAGATCGAGATCAATATTGTGGCAAGCTTT
CTAGACCAT
BO07259.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:55:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Traf6-RA | 1428 | CG10961-PA | 1..1425 | 17..1441 | 7125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:55:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Traf6-RA | 2788 | CG10961-RA | 126..1550 | 17..1441 | 7125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:55:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8155837..8157261 | 1441..17 | 7125 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:55:02 has no hits.
BO07259.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:21 Download gff for
BO07259.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf6-RA | 1..1428 | 17..1444 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:32 Download gff for
BO07259.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf6-RA | 98..1536 | 9..1449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:45:40 Download gff for
BO07259.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf6-RA | 126..1550 | 17..1443 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:21 Download gff for
BO07259.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf6-RA | 98..1536 | 9..1449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:34:06 Download gff for
BO07259.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf6-RA | 126..1550 | 17..1443 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:34:06 Download gff for
BO07259.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8155834..8157261 | 17..1443 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:45:40 Download gff for
BO07259.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8049867..8051294 | 17..1443 | 99 | | Minus |
BO07259.pep Sequence
Translation from 16 to 1459
> BO07259.pep
MQRVQADQKPARMHQHAHTHSHAHSLQHAEEKEHNSNEMTTNLSSTGRIA
ASSSATPSAAAGGGASGAPTPPKSLALNQNHHYAPGSDTSGEQEEELLDS
RYECAICIDWLNEPVLTSCGHRFCRSCLTAWMQKNNQCCPMDNKRLSAEH
DIFPDNYTRREIEQLKRDCPNSSLGCSVVASPIELHRHLPSCPYRRQQEP
QEEKCPFAKIKCDFVGRPETNQLEEHLKADMPHHMQLMLQAFQQTAIATW
QPHKPSTSGAAVENGHGQQQLPPPPQYANGVDEQIVQTMYQRIVVLEQRT
REQETRLENMQKQLRLARQQAPVDPRYSNGTIVWRIEQLGALVARLRANA
NNQVYSHECYTSPHGYKFCARLNIQPRKPHVLSLHVHLMQSENDYHLDWP
FKGRIKLCMVHPADATLSQHDTIMTKPEILAFHKPREAISTRGFGFLEYA
NISNIIQLGFCADDRLLIKIEINIVASFLDH
BO07259.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Traf6-PA | 475 | CG10961-PA | 1..475 | 1..475 | 2563 | 100 | Plus |
| CG9014-PB | 328 | CG9014-PB | 10..108 | 91..194 | 162 | 35.2 | Plus |
| CG9014-PA | 328 | CG9014-PA | 10..108 | 91..194 | 162 | 35.2 | Plus |
