Clone Sequence Records
BO07260.3prime Sequence
971 bp (836 high quality bases) assembled on 2005-12-04
> BO07260.3prime
ATGGTCTAGAAAGCTTGCGTTGGCATTGGCATCGATTAGGGGAGGCACTT
CGGATATATCAACAAGTGACTTTGCGGTGATAGCGTCGCCATCACCTACG
AGCTCCTGGGTGTCTGTCGCAATGTCAACGGTCTGCTCCTTTTCGTTCTT
AACGTTTGAGGCATCACCCGCTGCCTCTAGCTCGGCCTTTGACTCCGTTG
CGGCTGATTCCTGAACGCCGTTCGCCTCACCGTTCGTTGTGGATGCTGCA
GCTTCCGCCGCCGCTGCAGCTGCTGCCTTTGCCTTGGACTTTTTCTCCTT
CTTGCGTATATTCTTCTTGGCATTGTTCGCCTGACGCTGCTCCTCGGCCT
TCTTCTTTTCCTCAATGGAAGTCTTCGATTCATTCGTCGTTAGCAGCTTC
ATTTGGTTCTGCAGATTTGCCAATGTTTGCTTCAGTTCCGCACAATTGCG
AGACATCATTTCCATTTTAACATTTTCAGCACTAACTGGCTTGACGTTTA
CTGGCTCTGGTTCAGGAGGCAACTGCGGCAGGGCGGGTATTTCGATCTCG
TGATCCCGCAGGCACTTGTGCAGTGTTGTCCTCTCCAGCTGTAGAGCACG
CAGTAGCTTCTGCAGCTGCTGTATTTGCTTCTGCAGGCGCTCTGAGTGCT
GCGTCTGCAGACTCTTTTCTGTGGCTAAATCGATCACCATGGCATTAGCT
TTCTCGTACTTTTGCCGCCAGCCCAGCGCCTCCTTCTCGATCTTCTTAGT
GTGCTTGGACATCTTCTCAAGCTCCACCTTGTAGCTGCCGAAAACCTCAT
TGGACTTCTGCAGCGACTGCTGGAAGTCATCGTACTTGGCGGTGTATATG
TTCAGTTGCTCCTTCAGTTGGTGCTCCCGATCGGTGAGATCCTTTATGGC
ACGTTGCGCTTGCATCAGGTTCTCCAGCCCATCTGGTTTTCCTGCTCAAT
ATCTCCTTTTTCCTGGCAGCC
BO07260.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5886-PA | 1548 | CG5886-RA | 637..1545 | 927..19 | 4520 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:20:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5886-RA | 1894 | CG5886-RA | 692..1646 | 971..19 | 4665 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:20:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25852817..25853741 | 942..19 | 4545 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-04 20:20:43 has no hits.
BO07260.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:42 Download gff for
BO07260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5886-PA | 591..1548 | 15..971 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:54:12 Download gff for
BO07260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5886-PA | 591..1548 | 15..971 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:24:40 Download gff for
BO07260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5886-RA | 692..1655 | 8..971 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:48:40 Download gff for
BO07260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5886-RA | 692..1655 | 8..971 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:48:40 Download gff for
BO07260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25852817..25853750 | 8..942 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:24:40 Download gff for
BO07260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21678539..21679472 | 8..942 | 99 | | Minus |
BO07260.5prime Sequence
903 bp (739 high quality bases) assembled on 2005-12-04
> BO07260.5prime
GAAGTTATCAGTCGACATGGAGAAGCTAAGCAAGGCGAAAAAAGTGGCGC
GCGAGGAGAAGCAGCGCGACCAGAAGTTGGAGGAGTTGGTCATGAAATCC
CTTGACGAATGCCCCTCCGCCGAGGAGAAGGTGAAACTTCTGCTGCAACG
CCATGTGGACAGCGAAAAGAATGTAAGCCGGCTGACGGCGGAACTGCGTG
TCCTGCAGCGCCAAATGGAGTCGCAGCAGAGGGAGAAGGAGCAGGTTCAG
CGGGATCTTAACAAGAGCGTCCTGATGCGAGACAAGCTGCAGGAGGTGTG
CCGCGAACAGCAGCGCATCATAAAGTCCGTAAAGAACGAGAGCCTGCTGC
AAATCAAAGTGGAGGAGGAGCGGCGCAAGGAGAGCCAGACAAAGTTCCAA
AGCTCCCTGAACGATGTCCAAAAGTCGCTGGCCAAGAACAACGAGGAGAA
CATCAAGCTGCGCGATTACAACATCGAGATGACCAAGAAGTTAAAGCTGC
TGGCCGAGCAGTACCAAACGAGGGAGCAGCACCTGGAGAAGCTCAATGAA
CAGGTTCAGTTGGAGGCCCAGCTGCACCAGGCCAAGCTGCAAAAATGCCA
GGTGGAGGCTGCCATGGAAAAGGAGATATTGAGCAAGGAAAACCAGATTG
GCCTGGAGAAACTGATGCAAGCGCAACGTGCCATAAAGGATCTCACCGAT
CGGGAGCACCAACTGAAGGAGCAACTGAACATATACACCGCCAAGTACGA
TGACTTCCAGCAGTCGCTGCAGAAGTCCAATGAGGTTTTCGGCAGCTACA
AGGTGGAGCTTGAGAAGATGTCCAAGCACACTAAGAAGATCGAGAAAGAG
GCGCTGGGCTGGCGGCAAAAGTACGAGAAAGCTAATGCCATGGTGATCGA
TTT
BO07260.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5886-PA | 1548 | CG5886-RA | 1..887 | 17..903 | 4410 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:10:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5886-RA | 1894 | CG5886-RA | 101..988 | 16..903 | 4425 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:10:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25851919..25852322 | 88..491 | 2020 | 100 | Plus |
3R | 32079331 | 3R | 25852817..25853083 | 637..903 | 1320 | 99.6 | Plus |
3R | 32079331 | 3R | 25852428..25852575 | 490..637 | 740 | 100 | Plus |
Y | 3667352 | Y | 1457593..1457737 | 194..341 | 435 | 87.8 | Plus |
Y | 3667352 | Y | 1883828..1883972 | 341..194 | 435 | 87.8 | Minus |
Y | 3667352 | Y | 1888797..1888941 | 341..194 | 435 | 87.8 | Minus |
3R | 32079331 | 3R | 25851732..25851806 | 16..90 | 375 | 100 | Plus |
3L | 28110227 | 3L | 23315659..23315764 | 329..224 | 290 | 84.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 05:10:30 has no hits.
BO07260.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:44 Download gff for
BO07260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5886-PA | 1..887 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:54:14 Download gff for
BO07260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5886-PA | 1..887 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:21:30 Download gff for
BO07260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5886-RA | 95..988 | 7..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:36:11 Download gff for
BO07260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5886-RA | 95..988 | 7..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:36:11 Download gff for
BO07260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25851726..25851804 | 7..88 | 95 | -> | Plus |
3R | 25851920..25852320 | 89..489 | 100 | -> | Plus |
3R | 25852428..25852574 | 490..636 | 100 | -> | Plus |
3R | 25852817..25853083 | 637..903 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:21:30 Download gff for
BO07260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21677448..21677526 | 7..88 | 95 | -> | Plus |
arm_3R | 21677642..21678042 | 89..489 | 100 | -> | Plus |
arm_3R | 21678150..21678296 | 490..636 | 100 | -> | Plus |
arm_3R | 21678539..21678805 | 637..903 | 99 | | Plus |
BO07260.complete Sequence
1579 bp (1579 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630726
> BO07260.complete
GAAGTTATCAGTCGACATGGAGAAGCTAAGCAAGGCGAAAAAAGTGGCGC
GCGAGGAGAAGCAGCGCGACCAGAAGTTGGAGGAGTTGGTCATGAAATCC
CTTGACGAATGCCCCTCCGCCGAGGAGAAGGTGAAACTTCTGCTGCAACG
CCATGTGGACAGCGAAAAGAATGTAAGCCGGCTGACGGCGGAACTGCGTG
TCCTGCAGCGCCAAATGGAGTCGCAGCAGAGGGAGAAGGAGCAGGTTCAG
CGGGATCTTAACAAGAGCGTCCTGATGCGAGACAAGCTGCAGGAGGTGTG
CCGCGAACAGCAGCGCATCATAAAGTCCGTAAAGAACGAGAGCCTGCTGC
AAATCAAAGTGGAGGAGGAGCGGCGCAAGGAGAGCCAGACAAAGTTCCAA
AGCTCCCTGAACGATGTCCAAAAGTCGCTGGCCAAGAACAACGAGGAGAA
CATCAAGCTGCGCGATTACAACATCGAGATGACCAAGAAGTTAAAGCTGC
TGGCCGAGCAGTACCAAACGAGGGAGCAGCACCTGGAGAAGCTCAATGAA
CAGGTTCAGTTGGAGGCCCAGCTGCACCAGGCCAAGCTGCAAAAATGCCA
GGTGGAGGCTGCCATGGAAAAGGAGATATTGAGCAAGGAAAACCAGATTG
GCCTGGAGAAACTGATGCAAGCGCAACGTGCCATAAAGGATCTCACCGAT
CGGGAGCACCAACTGAAGGAGCAACTGAACATATACACCGCCAAGTACGA
TGACTTCCAGCAGTCGCTGCAGAAGTCCAATGAGGTTTTCGGCAGCTACA
AGGTGGAGCTTGAGAAGATGTCCAAGCACACTAAGAAGATCGAGAAGGAG
GCGCTGGGCTGGCGGCAAAAGTACGAGAAAGCTAATGCCATGGTGATCGA
TTTAGCCACAGAAAAGAGTCTGCAGACGCAGCACTCAGAGCGCCTGCAGA
AGCAAATACAGCAGCTGCAGAAGCTACTGCGTGCTCTACAGCTGGAGAGG
ACAACACTGCACAAGTGCCTGCGGGATCACGAGATCGAAATACCCGCCCT
GCCGCAGTTGCCTCCTGAACCAGAGCCAGTAAACGTCAAGCCAGTTAGTG
CTGAAAATGTTAAAATGGAAATGATGTCTCGCAATTGTGCGGAACTGAAG
CAAACATTGGCAAATCTGCAGAACCAAATGAAGCTGCTAACGACGAATGA
ATCGAAGACTTCCATTGAGGAAAAGAAGAAGGCCGAGGAGCAGCGTCAGG
CGAACAATGCCAAGAAGAATATACGCAAGAAGGAGAAAAAGTCCAAGGCA
AAGGCAGCAGCTGCAGCGGCGGCGGAAGCTGCAGCATCCACAACGAACGG
TGAGGCGAACGGCGTTCAGGAATCAGCCGCAACGGAGTCAAAGGCCGAGC
TAGAGGCAGCGGGTGATGCCTCAAACGTTAAGAACGAAAAGGAGCAGACC
GTTGACATTGCGACAGACACCCAGGAGCTCGTAGGTGATGGCGACGCTAT
CACCGCAAAGTCACTTGTTGATATATCCGAAGTGCCTCCCCTAATCGATG
CCAATGCCAACGCAAGCTTTCTAGACCAT
BO07260.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:43:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5886-RA | 1548 | CG5886-PA | 1..1545 | 17..1561 | 7725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:43:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5886-RA | 1894 | CG5886-RA | 101..1646 | 16..1561 | 7730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:43:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25852817..25853741 | 637..1561 | 4625 | 100 | Plus |
3R | 32079331 | 3R | 25851919..25852322 | 88..491 | 2020 | 100 | Plus |
3R | 32079331 | 3R | 25852428..25852575 | 490..637 | 740 | 100 | Plus |
Y | 3667352 | Y | 1457593..1457737 | 194..341 | 435 | 87.8 | Plus |
Y | 3667352 | Y | 1883828..1883972 | 341..194 | 435 | 87.8 | Minus |
Y | 3667352 | Y | 1888797..1888941 | 341..194 | 435 | 87.8 | Minus |
3R | 32079331 | 3R | 25851732..25851806 | 16..90 | 375 | 100 | Plus |
3L | 28110227 | 3L | 23315659..23315764 | 329..224 | 290 | 84.9 | Minus |
3L | 28110227 | 3L | 23315514..23315572 | 711..653 | 190 | 88.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:43:01 has no hits.
BO07260.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:22 Download gff for
BO07260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5886-RA | 1..1548 | 17..1565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:34 Download gff for
BO07260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5886-RA | 73..1633 | 7..1572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:02 Download gff for
BO07260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5886-RA | 102..1646 | 17..1563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:23 Download gff for
BO07260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5886-RA | 73..1633 | 7..1572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:17 Download gff for
BO07260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5886-RA | 102..1646 | 17..1563 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:51:17 Download gff for
BO07260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25851733..25851804 | 17..88 | 100 | -> | Plus |
3R | 25851920..25852320 | 89..489 | 100 | -> | Plus |
3R | 25852428..25852574 | 490..636 | 100 | -> | Plus |
3R | 25852817..25853741 | 637..1563 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:02 Download gff for
BO07260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21678150..21678296 | 490..636 | 100 | -> | Plus |
arm_3R | 21677455..21677526 | 17..88 | 100 | -> | Plus |
arm_3R | 21677642..21678042 | 89..489 | 100 | -> | Plus |
arm_3R | 21678539..21679463 | 637..1563 | 99 | | Plus |
BO07260.pep Sequence
Translation from 16 to 1579
> BO07260.pep
MEKLSKAKKVAREEKQRDQKLEELVMKSLDECPSAEEKVKLLLQRHVDSE
KNVSRLTAELRVLQRQMESQQREKEQVQRDLNKSVLMRDKLQEVCREQQR
IIKSVKNESLLQIKVEEERRKESQTKFQSSLNDVQKSLAKNNEENIKLRD
YNIEMTKKLKLLAEQYQTREQHLEKLNEQVQLEAQLHQAKLQKCQVEAAM
EKEILSKENQIGLEKLMQAQRAIKDLTDREHQLKEQLNIYTAKYDDFQQS
LQKSNEVFGSYKVELEKMSKHTKKIEKEALGWRQKYEKANAMVIDLATEK
SLQTQHSERLQKQIQQLQKLLRALQLERTTLHKCLRDHEIEIPALPQLPP
EPEPVNVKPVSAENVKMEMMSRNCAELKQTLANLQNQMKLLTTNESKTSI
EEKKKAEEQRQANNAKKNIRKKEKKSKAKAAAAAAAEAAASTTNGEANGV
QESAATESKAELEAAGDASNVKNEKEQTVDIATDTQELVGDGDAITAKSL
VDISEVPPLIDANANASFLDH
BO07260.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5886-PA | 515 | CG5886-PA | 1..515 | 1..515 | 2534 | 100 | Plus |
CLIP-190-PN | 1598 | CG5020-PN | 519..999 | 1..506 | 217 | 21 | Plus |
CLIP-190-PR | 1601 | CG5020-PR | 522..1002 | 1..506 | 217 | 21 | Plus |
CLIP-190-PP | 1623 | CG5020-PP | 544..1024 | 1..506 | 217 | 21 | Plus |
CLIP-190-PC | 1652 | CG5020-PC | 573..1053 | 1..506 | 217 | 21 | Plus |
CLIP-190-PR | 1601 | CG5020-PR | 280..792 | 7..486 | 203 | 19.9 | Plus |
CLIP-190-PN | 1598 | CG5020-PN | 282..789 | 12..486 | 199 | 19.9 | Plus |
CLIP-190-PP | 1623 | CG5020-PP | 307..814 | 12..486 | 199 | 19.9 | Plus |
CLIP-190-PN | 1598 | CG5020-PN | 914..1394 | 2..484 | 165 | 18.2 | Plus |
CLIP-190-PR | 1601 | CG5020-PR | 917..1397 | 2..484 | 165 | 18.2 | Plus |
CLIP-190-PP | 1623 | CG5020-PP | 939..1419 | 2..484 | 165 | 18.2 | Plus |