Clone BO07260 Report

Search the DGRC for BO07260

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:72
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCG5886-RA
Protein status:BO07260.pep: validated full length
Sequenced Size:1579

Clone Sequence Records

BO07260.3prime Sequence

971 bp (836 high quality bases) assembled on 2005-12-04

> BO07260.3prime
ATGGTCTAGAAAGCTTGCGTTGGCATTGGCATCGATTAGGGGAGGCACTT
CGGATATATCAACAAGTGACTTTGCGGTGATAGCGTCGCCATCACCTACG
AGCTCCTGGGTGTCTGTCGCAATGTCAACGGTCTGCTCCTTTTCGTTCTT
AACGTTTGAGGCATCACCCGCTGCCTCTAGCTCGGCCTTTGACTCCGTTG
CGGCTGATTCCTGAACGCCGTTCGCCTCACCGTTCGTTGTGGATGCTGCA
GCTTCCGCCGCCGCTGCAGCTGCTGCCTTTGCCTTGGACTTTTTCTCCTT
CTTGCGTATATTCTTCTTGGCATTGTTCGCCTGACGCTGCTCCTCGGCCT
TCTTCTTTTCCTCAATGGAAGTCTTCGATTCATTCGTCGTTAGCAGCTTC
ATTTGGTTCTGCAGATTTGCCAATGTTTGCTTCAGTTCCGCACAATTGCG
AGACATCATTTCCATTTTAACATTTTCAGCACTAACTGGCTTGACGTTTA
CTGGCTCTGGTTCAGGAGGCAACTGCGGCAGGGCGGGTATTTCGATCTCG
TGATCCCGCAGGCACTTGTGCAGTGTTGTCCTCTCCAGCTGTAGAGCACG
CAGTAGCTTCTGCAGCTGCTGTATTTGCTTCTGCAGGCGCTCTGAGTGCT
GCGTCTGCAGACTCTTTTCTGTGGCTAAATCGATCACCATGGCATTAGCT
TTCTCGTACTTTTGCCGCCAGCCCAGCGCCTCCTTCTCGATCTTCTTAGT
GTGCTTGGACATCTTCTCAAGCTCCACCTTGTAGCTGCCGAAAACCTCAT
TGGACTTCTGCAGCGACTGCTGGAAGTCATCGTACTTGGCGGTGTATATG
TTCAGTTGCTCCTTCAGTTGGTGCTCCCGATCGGTGAGATCCTTTATGGC
ACGTTGCGCTTGCATCAGGTTCTCCAGCCCATCTGGTTTTCCTGCTCAAT
ATCTCCTTTTTCCTGGCAGCC

BO07260.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5886-PA 1548 CG5886-RA 637..1545 927..19 4520 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:20:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5886-RA 1894 CG5886-RA 692..1646 971..19 4665 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25852817..25853741 942..19 4545 99.7 Minus
Blast to na_te.dros performed on 2015-02-04 20:20:43 has no hits.

BO07260.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:42 Download gff for BO07260.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5886-PA 591..1548 15..971 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:54:12 Download gff for BO07260.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5886-PA 591..1548 15..971 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:24:40 Download gff for BO07260.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5886-RA 692..1655 8..971 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:48:40 Download gff for BO07260.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5886-RA 692..1655 8..971 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:48:40 Download gff for BO07260.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25852817..25853750 8..942 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:24:40 Download gff for BO07260.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21678539..21679472 8..942 99   Minus

BO07260.5prime Sequence

903 bp (739 high quality bases) assembled on 2005-12-04

> BO07260.5prime
GAAGTTATCAGTCGACATGGAGAAGCTAAGCAAGGCGAAAAAAGTGGCGC
GCGAGGAGAAGCAGCGCGACCAGAAGTTGGAGGAGTTGGTCATGAAATCC
CTTGACGAATGCCCCTCCGCCGAGGAGAAGGTGAAACTTCTGCTGCAACG
CCATGTGGACAGCGAAAAGAATGTAAGCCGGCTGACGGCGGAACTGCGTG
TCCTGCAGCGCCAAATGGAGTCGCAGCAGAGGGAGAAGGAGCAGGTTCAG
CGGGATCTTAACAAGAGCGTCCTGATGCGAGACAAGCTGCAGGAGGTGTG
CCGCGAACAGCAGCGCATCATAAAGTCCGTAAAGAACGAGAGCCTGCTGC
AAATCAAAGTGGAGGAGGAGCGGCGCAAGGAGAGCCAGACAAAGTTCCAA
AGCTCCCTGAACGATGTCCAAAAGTCGCTGGCCAAGAACAACGAGGAGAA
CATCAAGCTGCGCGATTACAACATCGAGATGACCAAGAAGTTAAAGCTGC
TGGCCGAGCAGTACCAAACGAGGGAGCAGCACCTGGAGAAGCTCAATGAA
CAGGTTCAGTTGGAGGCCCAGCTGCACCAGGCCAAGCTGCAAAAATGCCA
GGTGGAGGCTGCCATGGAAAAGGAGATATTGAGCAAGGAAAACCAGATTG
GCCTGGAGAAACTGATGCAAGCGCAACGTGCCATAAAGGATCTCACCGAT
CGGGAGCACCAACTGAAGGAGCAACTGAACATATACACCGCCAAGTACGA
TGACTTCCAGCAGTCGCTGCAGAAGTCCAATGAGGTTTTCGGCAGCTACA
AGGTGGAGCTTGAGAAGATGTCCAAGCACACTAAGAAGATCGAGAAAGAG
GCGCTGGGCTGGCGGCAAAAGTACGAGAAAGCTAATGCCATGGTGATCGA
TTT

BO07260.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5886-PA 1548 CG5886-RA 1..887 17..903 4410 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:10:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG5886-RA 1894 CG5886-RA 101..988 16..903 4425 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:10:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25851919..25852322 88..491 2020 100 Plus
3R 32079331 3R 25852817..25853083 637..903 1320 99.6 Plus
3R 32079331 3R 25852428..25852575 490..637 740 100 Plus
Y 3667352 Y 1457593..1457737 194..341 435 87.8 Plus
Y 3667352 Y 1883828..1883972 341..194 435 87.8 Minus
Y 3667352 Y 1888797..1888941 341..194 435 87.8 Minus
3R 32079331 3R 25851732..25851806 16..90 375 100 Plus
3L 28110227 3L 23315659..23315764 329..224 290 84.9 Minus
Blast to na_te.dros performed on 2015-02-11 05:10:30 has no hits.

BO07260.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:44 Download gff for BO07260.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5886-PA 1..887 17..903 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:54:14 Download gff for BO07260.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5886-PA 1..887 17..903 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:21:30 Download gff for BO07260.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5886-RA 95..988 7..903 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:36:11 Download gff for BO07260.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5886-RA 95..988 7..903 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:36:11 Download gff for BO07260.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25851726..25851804 7..88 95 -> Plus
3R 25851920..25852320 89..489 100 -> Plus
3R 25852428..25852574 490..636 100 -> Plus
3R 25852817..25853083 637..903 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:21:30 Download gff for BO07260.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21677448..21677526 7..88 95 -> Plus
arm_3R 21677642..21678042 89..489 100 -> Plus
arm_3R 21678150..21678296 490..636 100 -> Plus
arm_3R 21678539..21678805 637..903 99   Plus

BO07260.complete Sequence

1579 bp (1579 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630726

> BO07260.complete
GAAGTTATCAGTCGACATGGAGAAGCTAAGCAAGGCGAAAAAAGTGGCGC
GCGAGGAGAAGCAGCGCGACCAGAAGTTGGAGGAGTTGGTCATGAAATCC
CTTGACGAATGCCCCTCCGCCGAGGAGAAGGTGAAACTTCTGCTGCAACG
CCATGTGGACAGCGAAAAGAATGTAAGCCGGCTGACGGCGGAACTGCGTG
TCCTGCAGCGCCAAATGGAGTCGCAGCAGAGGGAGAAGGAGCAGGTTCAG
CGGGATCTTAACAAGAGCGTCCTGATGCGAGACAAGCTGCAGGAGGTGTG
CCGCGAACAGCAGCGCATCATAAAGTCCGTAAAGAACGAGAGCCTGCTGC
AAATCAAAGTGGAGGAGGAGCGGCGCAAGGAGAGCCAGACAAAGTTCCAA
AGCTCCCTGAACGATGTCCAAAAGTCGCTGGCCAAGAACAACGAGGAGAA
CATCAAGCTGCGCGATTACAACATCGAGATGACCAAGAAGTTAAAGCTGC
TGGCCGAGCAGTACCAAACGAGGGAGCAGCACCTGGAGAAGCTCAATGAA
CAGGTTCAGTTGGAGGCCCAGCTGCACCAGGCCAAGCTGCAAAAATGCCA
GGTGGAGGCTGCCATGGAAAAGGAGATATTGAGCAAGGAAAACCAGATTG
GCCTGGAGAAACTGATGCAAGCGCAACGTGCCATAAAGGATCTCACCGAT
CGGGAGCACCAACTGAAGGAGCAACTGAACATATACACCGCCAAGTACGA
TGACTTCCAGCAGTCGCTGCAGAAGTCCAATGAGGTTTTCGGCAGCTACA
AGGTGGAGCTTGAGAAGATGTCCAAGCACACTAAGAAGATCGAGAAGGAG
GCGCTGGGCTGGCGGCAAAAGTACGAGAAAGCTAATGCCATGGTGATCGA
TTTAGCCACAGAAAAGAGTCTGCAGACGCAGCACTCAGAGCGCCTGCAGA
AGCAAATACAGCAGCTGCAGAAGCTACTGCGTGCTCTACAGCTGGAGAGG
ACAACACTGCACAAGTGCCTGCGGGATCACGAGATCGAAATACCCGCCCT
GCCGCAGTTGCCTCCTGAACCAGAGCCAGTAAACGTCAAGCCAGTTAGTG
CTGAAAATGTTAAAATGGAAATGATGTCTCGCAATTGTGCGGAACTGAAG
CAAACATTGGCAAATCTGCAGAACCAAATGAAGCTGCTAACGACGAATGA
ATCGAAGACTTCCATTGAGGAAAAGAAGAAGGCCGAGGAGCAGCGTCAGG
CGAACAATGCCAAGAAGAATATACGCAAGAAGGAGAAAAAGTCCAAGGCA
AAGGCAGCAGCTGCAGCGGCGGCGGAAGCTGCAGCATCCACAACGAACGG
TGAGGCGAACGGCGTTCAGGAATCAGCCGCAACGGAGTCAAAGGCCGAGC
TAGAGGCAGCGGGTGATGCCTCAAACGTTAAGAACGAAAAGGAGCAGACC
GTTGACATTGCGACAGACACCCAGGAGCTCGTAGGTGATGGCGACGCTAT
CACCGCAAAGTCACTTGTTGATATATCCGAAGTGCCTCCCCTAATCGATG
CCAATGCCAACGCAAGCTTTCTAGACCAT

BO07260.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:43:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG5886-RA 1548 CG5886-PA 1..1545 17..1561 7725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:43:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG5886-RA 1894 CG5886-RA 101..1646 16..1561 7730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:43:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25852817..25853741 637..1561 4625 100 Plus
3R 32079331 3R 25851919..25852322 88..491 2020 100 Plus
3R 32079331 3R 25852428..25852575 490..637 740 100 Plus
Y 3667352 Y 1457593..1457737 194..341 435 87.8 Plus
Y 3667352 Y 1883828..1883972 341..194 435 87.8 Minus
Y 3667352 Y 1888797..1888941 341..194 435 87.8 Minus
3R 32079331 3R 25851732..25851806 16..90 375 100 Plus
3L 28110227 3L 23315659..23315764 329..224 290 84.9 Minus
3L 28110227 3L 23315514..23315572 711..653 190 88.1 Minus
Blast to na_te.dros performed on 2014-11-27 14:43:01 has no hits.

BO07260.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:22 Download gff for BO07260.complete
Subject Subject Range Query Range Percent Splice Strand
CG5886-RA 1..1548 17..1565 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:34 Download gff for BO07260.complete
Subject Subject Range Query Range Percent Splice Strand
CG5886-RA 73..1633 7..1572 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:02 Download gff for BO07260.complete
Subject Subject Range Query Range Percent Splice Strand
CG5886-RA 102..1646 17..1563 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:23 Download gff for BO07260.complete
Subject Subject Range Query Range Percent Splice Strand
CG5886-RA 73..1633 7..1572 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:17 Download gff for BO07260.complete
Subject Subject Range Query Range Percent Splice Strand
CG5886-RA 102..1646 17..1563 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:51:17 Download gff for BO07260.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25851733..25851804 17..88 100 -> Plus
3R 25851920..25852320 89..489 100 -> Plus
3R 25852428..25852574 490..636 100 -> Plus
3R 25852817..25853741 637..1563 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:02 Download gff for BO07260.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21678150..21678296 490..636 100 -> Plus
arm_3R 21677455..21677526 17..88 100 -> Plus
arm_3R 21677642..21678042 89..489 100 -> Plus
arm_3R 21678539..21679463 637..1563 99   Plus

BO07260.pep Sequence

Translation from 16 to 1579

> BO07260.pep
MEKLSKAKKVAREEKQRDQKLEELVMKSLDECPSAEEKVKLLLQRHVDSE
KNVSRLTAELRVLQRQMESQQREKEQVQRDLNKSVLMRDKLQEVCREQQR
IIKSVKNESLLQIKVEEERRKESQTKFQSSLNDVQKSLAKNNEENIKLRD
YNIEMTKKLKLLAEQYQTREQHLEKLNEQVQLEAQLHQAKLQKCQVEAAM
EKEILSKENQIGLEKLMQAQRAIKDLTDREHQLKEQLNIYTAKYDDFQQS
LQKSNEVFGSYKVELEKMSKHTKKIEKEALGWRQKYEKANAMVIDLATEK
SLQTQHSERLQKQIQQLQKLLRALQLERTTLHKCLRDHEIEIPALPQLPP
EPEPVNVKPVSAENVKMEMMSRNCAELKQTLANLQNQMKLLTTNESKTSI
EEKKKAEEQRQANNAKKNIRKKEKKSKAKAAAAAAAEAAASTTNGEANGV
QESAATESKAELEAAGDASNVKNEKEQTVDIATDTQELVGDGDAITAKSL
VDISEVPPLIDANANASFLDH

BO07260.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG5886-PA 515 CG5886-PA 1..515 1..515 2534 100 Plus
CLIP-190-PN 1598 CG5020-PN 519..999 1..506 217 21 Plus
CLIP-190-PR 1601 CG5020-PR 522..1002 1..506 217 21 Plus
CLIP-190-PP 1623 CG5020-PP 544..1024 1..506 217 21 Plus
CLIP-190-PC 1652 CG5020-PC 573..1053 1..506 217 21 Plus
CLIP-190-PR 1601 CG5020-PR 280..792 7..486 203 19.9 Plus
CLIP-190-PN 1598 CG5020-PN 282..789 12..486 199 19.9 Plus
CLIP-190-PP 1623 CG5020-PP 307..814 12..486 199 19.9 Plus
CLIP-190-PN 1598 CG5020-PN 914..1394 2..484 165 18.2 Plus
CLIP-190-PR 1601 CG5020-PR 917..1397 2..484 165 18.2 Plus
CLIP-190-PP 1623 CG5020-PP 939..1419 2..484 165 18.2 Plus