Clone Sequence Records
BO07267.3prime Sequence
903 bp (771 high quality bases) assembled on 2005-12-04
> BO07267.3prime
ATGGTCTAGAAAGCTTGCAACCACGGGATAGGAGCACTCCTCAGCAATGA
AGCAGTAGTTTTTGCCGCGAGGCAGGCGGAAGTAGCCCTTTTCGCCCCAG
GTGTCGTCCCAGGAGTTCTTGACGATCCAGTAATCCTGTCCTTTCTCCGA
TCCGTAACCGACGACCAGAATGGAGTGGTTCGGCTCGCCCTTGTTGCACT
CATCGTCGTTATAGATGCCACCGGCGTAGTTCTTAAGAGTCTCCAAACCA
TTCACCGAACAGGCAACTGGTCCCAGAGTGGCCACCACCTTCTTCAGCTG
CTCCTCGTCCTTGGGCGGAATAGCGGCGAATCCCTGGAGGGTGGCTCCGG
ACTTGCTGCCATCGTACTTGCACGTGCCCTTGTTGTCAATGTAGGGATAG
GCCCCCTCCTGGGACACACCCTTTTGCACCTCATCGATGAAACAGAATGC
GGCCTCCTGGAAGCCACCATCGCAGCCATTCAGGCCAAAGTCCTCCACCG
GACCACAGTCGACCAGATTCTGCTCAGAGAGATTGGGCAGGCTGCCGGTC
TTGCGGAAGGTGTGTCCCTCAATGGCACCAGTGGTGGCAAAGGCCCAACA
GGAGCCACAGGTACCCTGGAATTTGACTGGTGTGACACCGCCATGCTCGC
GCCAATCGAAGGCATCCGGGATGGGCTTCGCAGGCAGGTTGACCAACTTC
AAACTGGCAGCAGCTCGAGCCTTAGCCTCCGGACTTCTCTTCAGACCGGT
CAATTGACTAAGGAACTCAGAGTGGGTCAGATCGGCGAAGGCGTTCACGG
CCTGCTTGAAGGTGTGCACTCCTTGGGGCAAGGCTGCGTTTCCGGCTTCC
ACAGGTTCTTGGTGGAAGCGAGGCACCTCATGAAGAGCGCGATCAGCGGC
GGA
BO07267.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4847-PA | 1173 | CG4847-RA | 337..1170 | 852..19 | 4120 | 99.7 | Minus |
CG4847-PC | 1173 | CG4847-RC | 337..1170 | 852..19 | 4120 | 99.7 | Minus |
CG4847-PD | 1263 | CG4847-RD | 427..1260 | 852..19 | 4120 | 99.7 | Minus |
CG4847-PB | 1173 | CG4847-RB | 337..1170 | 852..19 | 4120 | 99.7 | Minus |
CG4847-PE | 1173 | CG4847-RE | 337..1170 | 852..19 | 4120 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:05:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4847-RE | 1308 | CG4847-RE | 318..1205 | 903..19 | 4335 | 99.4 | Minus |
CG4847-RD | 1501 | CG4847-RD | 511..1398 | 903..19 | 4335 | 99.4 | Minus |
CG4847-RC | 1313 | CG4847-RC | 323..1210 | 903..19 | 4335 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:05:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17513050..17513752 | 721..19 | 3515 | 100 | Minus |
2R | 25286936 | 2R | 17512800..17512985 | 903..721 | 750 | 97.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:05:30 has no hits.
BO07267.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:53 Download gff for
BO07267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4847-PA | 284..1173 | 15..902 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:54:27 Download gff for
BO07267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4847-PE | 284..1173 | 15..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:44:56 Download gff for
BO07267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4847-RC | 324..1215 | 13..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:09:51 Download gff for
BO07267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4847-RC | 324..1215 | 13..902 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:09:51 Download gff for
BO07267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17512801..17512984 | 722..902 | 97 | -> | Minus |
2R | 17513050..17513757 | 13..721 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:44:56 Download gff for
BO07267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13400306..13400489 | 722..902 | 97 | -> | Minus |
arm_2R | 13400555..13401262 | 13..721 | 99 | | Minus |
BO07267.5prime Sequence
821 bp (746 high quality bases) assembled on 2005-12-04
> BO07267.5prime
GAAGTTATCAGTCGATATGAAGCTTCTGTTGGTTCTTCCACTTCTGGTGG
CTGTGGTCTCTGGCCAGGGATTCGGAGGCGGTGGATTTGGAGGCGGATTT
GGAGGTGGACTCGGAGGCGGATTTGGAGGTGGACTCGGAGGCTTGGGCAA
CAATCGAGTGGGTGGAGCTTTACAAAATGTGGCCGGCGCCGTTCAGAATG
CCGTGGGCAACATTGCCAAGGCTGTGCCCAAGGTGCCGCTGCTCTCAAAC
GTCCAGGACTTTGGTGACTTCTTGAGCCAATCTGGAAAGACCTATCTCTC
CGCCGCTGATCGCGCTCTTCATGAAGGTGCCTTCGCTTCCACCAAGAACC
TGGTGGAAGCCGGAAACGCAGCCTTTGCCCAAGGAGTGCACACCTTCAAG
CAGGCCGTGAACGCCTTCGCCGATCTGACCCACTCTGAGTTCCTTAGTCA
ATTGACCGGTCTGAAGAGAAGTCCGGAGGCTAAGGCTCGAGCTGCTGCCA
GTTTGAAGTTGGTCAACCTGCCTGCGAAGCCCATCCCGGATGCCTTCGAT
TGGCGCGAGCATGGCGGTGTCACACCAGTCAAATTCCAGGGTACCTGTGG
CTCCTGTTGGGCCTTTGCCACCACTGGTGCCATTGAGGGACACACCTTCC
GCAAGACCGGCAGCCTGCCCAATCTCTCTGAGCAGAATCTGGTCGACTGT
GGTCCGGTGGAGGACTTTGGCCTGAATGGCTGCGATGGTGGCTTCCAGGA
GGCCGCATTCTGTTTCATCGATGAGGTGCAAAAGGGTGTGTCCCAGGAGG
GGGCCTATCCCTACATTGACA
BO07267.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4847-PD | 1263 | CG4847-RD | 90..895 | 16..821 | 4030 | 100 | Plus |
CG4847-PA | 1173 | CG4847-RA | 1..805 | 17..821 | 4025 | 100 | Plus |
CG4847-PC | 1173 | CG4847-RC | 1..805 | 17..821 | 4025 | 100 | Plus |
CG4847-PB | 1173 | CG4847-RB | 1..805 | 17..821 | 4025 | 100 | Plus |
CG4847-PE | 1173 | CG4847-RE | 1..805 | 17..821 | 4025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:34:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4847-RE | 1308 | CG4847-RE | 35..840 | 16..821 | 4030 | 100 | Plus |
CG4847-RD | 1501 | CG4847-RD | 228..1033 | 16..821 | 4030 | 100 | Plus |
CG4847-RC | 1313 | CG4847-RC | 40..845 | 16..821 | 4030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:34:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17513050..17513387 | 484..821 | 1690 | 100 | Plus |
2R | 25286936 | 2R | 17512457..17512715 | 16..274 | 1295 | 100 | Plus |
2R | 25286936 | 2R | 17512775..17512985 | 274..484 | 1055 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:34:36 has no hits.
BO07267.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:13:54 Download gff for
BO07267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4847-PD | 82..894 | 9..820 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:54:30 Download gff for
BO07267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4847-PD | 82..894 | 9..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:55:16 Download gff for
BO07267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4847-RC | 35..844 | 7..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:45:02 Download gff for
BO07267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4847-RC | 35..844 | 7..820 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:45:02 Download gff for
BO07267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17512449..17512715 | 9..274 | 98 | -> | Plus |
2R | 17512776..17512984 | 275..483 | 100 | -> | Plus |
2R | 17513050..17513386 | 484..820 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:55:16 Download gff for
BO07267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13399954..13400220 | 9..274 | 98 | -> | Plus |
arm_2R | 13400281..13400489 | 275..483 | 100 | -> | Plus |
arm_2R | 13400555..13400891 | 484..820 | 100 | | Plus |
BO07267.complete Sequence
1204 bp assembled on 2011-06-28
GenBank Submission: KX798354
> BO07267.complete
GAAGTTATCAGTCGATATGAAGCTTCTGTTGGTTCTTCCACTTCTGGTGG
CTGTGGTCTCTGGCCAGGGATTCGGAGGCGGTGGATTTGGAGGCGGATTT
GGAGGTGGACTCGGAGGCGGATTTGGAGGTGGACTCGGAGGCTTGGGCAA
CAATCGAGTGGGTGGAGCTTTACAAAATGTGGCCGGCGCCGTTCAGAATG
CCGTGGGCAACATTGCCAAGGCTGTGCCCAAGGTGCCGCTGCTCTCAAAC
GTCCAGGACTTTGGTGACTTCTTGAGCCAATCTGGAAAGACCTATCTCTC
CGCCGCTGATCGCGCTCTTCATGAAGGTGCCTTCGCTTCCACCAAGAACC
TGGTGGAAGCCGGAAACGCAGCCTTTGCCCAAGGAGTGCACACCTTCAAG
CAGGCCGTGAACGCCTTCGCCGATCTGACCCACTCTGAGTTCCTTAGTCA
ATTGACCGGTCTGAAGAGAAGTCCGGAGGCTAAGGCTCGAGCTGCTGCCA
GTTTGAAGTTGGTCAACCTGCCTGCGAAGCCCATCCCGGATGCCTTCGAT
TGGCGCGAGCATGGCGGTGTCACACCAGTCAAATTCCAGGGTACCTGTGG
CTCCTGTTGGGCCTTTGCCACCACTGGTGCCATTGAGGGACACACCTTCC
GCAAGACCGGCAGCCTGCCCAATCTCTCTGAGCAGAATCTGGTCGACTGT
GGTCCGGTGGAGGACTTTGGCCTGAATGGCTGCGATGGTGGCTTCCAGGA
GGCCGCATTCTGTTTCATCGATGAGGTGCAAAAGGGTGTGTCCCAGGAGG
GGGCCTATCCCTACATTGACAACAAGGGCACGTGCAAGTACGATGGCAGC
AAGTCCGGAGCCACCCTCCAGGGATTCGCCGCTATTCCGCCCAAGGACGA
GGAGCAGCTGAAGAAGGTGGTGGCCACTCTGGGACCAGTTGCCTGTTCGG
TGAATGGTTTGGAGACTCTTAAGAACTACGCCGGTGGCATCTATAACGAC
GATGAGTGCAACAAGGGCGAGCCGAACCACTCCATTCTGGTCGTCGGTTA
CGGATCGGAGAAAGGACAGGATTACTGGATCGTCAAGAACTCCTGGGACG
ACACCTGGGGCGAAAAGGGCTACTTCCGCCTGCCTCGCGGCAAAAACTAC
TGCTTCATTGCTGAGGAGTGCTCCTATCCCGTGGTTGCAAGCTTTCTAGA
CCAT
BO07267.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:13:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4847-RD | 1263 | CG4847-PD | 90..1260 | 16..1186 | 5855 | 100 | Plus |
CG4847-RE | 1173 | CG4847-PE | 1..1170 | 17..1186 | 5850 | 100 | Plus |
CG4847-RC | 1173 | CG4847-PC | 1..1170 | 17..1186 | 5850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4847-RE | 1308 | CG4847-RE | 35..1205 | 16..1186 | 5855 | 100 | Plus |
CG4847-RD | 1501 | CG4847-RD | 228..1398 | 16..1186 | 5855 | 100 | Plus |
CG4847-RC | 1313 | CG4847-RC | 40..1210 | 16..1186 | 5855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17513050..17513752 | 484..1186 | 3515 | 100 | Plus |
2R | 25286936 | 2R | 17512457..17512715 | 16..274 | 1295 | 100 | Plus |
2R | 25286936 | 2R | 17512775..17512985 | 274..484 | 1055 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:13:31 has no hits.
BO07267.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:21 Download gff for
BO07267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4847-RD | 224..1393 | 17..1188 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:55:24 Download gff for
BO07267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4847-RC | 41..1210 | 17..1188 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:14:01 Download gff for
BO07267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4847-RC | 41..1210 | 17..1188 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:14:01 Download gff for
BO07267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17512458..17512715 | 17..274 | 100 | -> | Plus |
2R | 17512776..17512984 | 275..483 | 100 | -> | Plus |
2R | 17513050..17513752 | 484..1188 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:55:24 Download gff for
BO07267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13399963..13400220 | 17..274 | 100 | -> | Plus |
arm_2R | 13400281..13400489 | 275..483 | 100 | -> | Plus |
arm_2R | 13400555..13401257 | 484..1188 | 99 | | Plus |
BO07267.pep Sequence
Translation from 16 to 1204
> BO07267.pep
MKLLLVLPLLVAVVSGQGFGGGGFGGGFGGGLGGGFGGGLGGLGNNRVGG
ALQNVAGAVQNAVGNIAKAVPKVPLLSNVQDFGDFLSQSGKTYLSAADRA
LHEGAFASTKNLVEAGNAAFAQGVHTFKQAVNAFADLTHSEFLSQLTGLK
RSPEAKARAAASLKLVNLPAKPIPDAFDWREHGGVTPVKFQGTCGSCWAF
ATTGAIEGHTFRKTGSLPNLSEQNLVDCGPVEDFGLNGCDGGFQEAAFCF
IDEVQKGVSQEGAYPYIDNKGTCKYDGSKSGATLQGFAAIPPKDEEQLKK
VVATLGPVACSVNGLETLKNYAGGIYNDDECNKGEPNHSILVVGYGSEKG
QDYWIVKNSWDDTWGEKGYFRLPRGKNYCFIAEECSYPVVASFLDH
BO07267.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:50:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4847-PE | 390 | CG4847-PE | 1..390 | 1..390 | 2081 | 100 | Plus |
CG4847-PC | 390 | CG4847-PC | 1..390 | 1..390 | 2081 | 100 | Plus |
CG4847-PA | 390 | CG4847-PA | 1..390 | 1..390 | 2081 | 100 | Plus |
CG4847-PD | 420 | CG4847-PD | 31..420 | 1..390 | 2081 | 100 | Plus |
CG6347-PA | 352 | CG6347-PA | 30..352 | 74..390 | 733 | 46.2 | Plus |