Clone BO07271 Report

Search the DGRC for BO07271

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:72
Well:71
Vector:pDNR-Dual
Associated Gene/Transcriptp47-RA
Protein status:BO07271.pep: validated full length
Sequenced Size:1255

Clone Sequence Records

BO07271.3prime Sequence

916 bp (810 high quality bases) assembled on 2005-12-04

> BO07271.3prime
ATGGTCTAGAAAGCTTGCCTTGAGGCGCTGCATGAGTGCCGCGTTCTTGA
GGCCAGCCTTCTCGATGGTGGAATTGTCGTCGCTCAGCTCGCGAGTGGGG
AACGAGGACACCAGGATGAAATTACTAGTTGAGTACTGAGGGCGTGCAGT
TTGTATGAAACGACGAATGTCGGAGACGGTGTGCGAAAGATTAAACTGCG
CAGCTAGACGCGAACCGTCCGCTAGGCGAATCTGCAGCGTAGTGGACGGT
GCTTCGGAATTTAAGTTAATGGCATCACGGGCACTAGCCTCCTGGTTTGC
AGCCTCACCGGGCGACAATGCCACTGGAACTGTTGGCGCTTCCGTGACCA
AATTGGCCACGGGACTGCCCAGCTTCTGGCCCGATCCCTTAAAAGTCTGC
GGAACTGGCTGACGTTTGAAGTCCTCGTGGCGGTGGTCCTCCACATCCAC
ATTGACCATGCGCCCCATTTCCAGCAGCTCTTGCGGAATTTCCCCGCGCA
TGACAGTCTCTAGGAATTCCTTATTCTGCGGATCGTCATAGTGACGAAGC
TCACCGCCATCGATGGAGAAGCCCTGGCTCCAGAGCTTTAGCACCACCAC
CGGCTTGTTTTCGATGGTCGCAGCCGGTTTTTTGGTGCCCACAGCCGTGT
GGTCATTATCGGTCATGCCCAGCCGCATGCCTTGGCCCCAGACGGCACCG
CCAGATCCTCCGCTGGCACTGCCGCTGCTGGTTGATGGCCCCACCTCTGC
GATGTTTTGCTCCTGCGCAGAACGCATCATGTCGGTGAGCTGCTCCCGGA
AGTTCTTGCGCTTGGGCGGGCCCAGCACTTGCTGACCGGAGCGATCTGAG
CCGCCGGCATAGAAGGCCTGCTGGTCATCGTCACTAGACGACTCCTTCGA
CATGTCGCTAAGCGTT

BO07271.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG11139-PA 1224 p47-RA 324..1221 916..19 4490 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:45:33
Subject Length Description Subject Range Query Range Score Percent Strand
p47-RA 1432 CG11139-RA 413..1310 916..19 4490 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:45:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7465778..7466201 493..916 2120 100 Plus
2R 25286936 2R 7465331..7465676 149..494 1730 100 Plus
2R 25286936 2R 7465140..7465269 19..148 650 100 Plus
Blast to na_te.dros performed on 2015-02-13 12:45:32 has no hits.

BO07271.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 03:14:01 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:54:38 Download gff for BO07271.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11139-PA 324..1224 15..916 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:04:20 Download gff for BO07271.3prime
Subject Subject Range Query Range Percent Splice Strand
p47-RA 413..1320 7..916 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:24:47 Download gff for BO07271.3prime
Subject Subject Range Query Range Percent Splice Strand
p47-RA 413..1320 7..916 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:24:47 Download gff for BO07271.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7465141..7465269 20..148 100 <- Plus
2R 7465331..7465675 149..493 100 <- Plus
2R 7465779..7466201 494..916 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:04:20 Download gff for BO07271.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3352646..3352774 20..148 100 <- Plus
arm_2R 3352836..3353180 149..493 100 <- Plus
arm_2R 3353284..3353706 494..916 100   Plus

BO07271.5prime Sequence

917 bp (856 high quality bases) assembled on 2005-12-04

> BO07271.5prime
GAAGTTATCAGTCGACATGGCCGCGCGCGGCGATTTGATTGCACAGTTCA
TTGAGATCACCGGAACCGACGAGAACGTGGCCAGGTTCTACCTGTCCAGC
TGCGACTGGGACATCGAGCACGCGCTGGGCAACTACTGGAGCACCCAGGC
GGACCTGCCGGTTCCGGTGCCGACGGTGGGCCACGCGGACAACCCCAAAC
CAAAGCCGACATCGAGCAGCGGAGCAAGTGCATCGGCATCCGCTGCTGGG
GCCACCAAGAGTGCGGACTCAGCCGTCGCTACCTCGTCAGCTTCGGTGGA
CATCGCCCCGGCAGCGACCAAGGCCAAGCCAAAATTCGCAACGCTTAGCG
ACATGTCGAAGGAGTCGTCTAGTGACGATGACCAGCAGGCCTTCTATGCC
GGCGGCTCAGATCGCTCCGGTCAGCAAGTGCTGGGCCCGCCCAAGCGCAA
GAACTTCCGGGAGCAGCTCACCGACATGATGCGTTCTGCGCAGGAGCAAA
ACATCGCAGAGGTGGGGCCATCAACCAGCAGCGGCAGTGCCAGCGGAGGA
TCTGGCGGTGCCGTCTGGGGCCAAGGCATGCGGCTGGGCATGACCGATAA
TGACCACACGGCTGTGGGCACCAAAAAACCGGCTGCGACCATCGAAAACA
AGCCGGTGGTGGTGCTAAAGCTCTGGAGCCAGGGCTTCTCCATCGATGGC
GGTGAGCTTCGTCACTATGACGATCCGCAGAATAAGGAATTCCTAGAGAC
TGTCATGCGCGGGGAAATTCCGCAAGAGCTGCTGGAAATGGGGCGCATGG
TCAATGTGGATGTGGAGGACCACCGCCACGAGGACTTCAAACGTCAGCCA
GTTCCGCAGACTTTTAAGGGATCGGGCCAGAAGCTGGGCAGTCCCGTGGC
CAATTTGGTCACGGAAG

BO07271.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG11139-PA 1224 p47-RA 1..901 17..917 4505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:10:57
Subject Length Description Subject Range Query Range Score Percent Strand
p47-RA 1432 CG11139-RA 90..990 17..917 4505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:10:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7465778..7466207 763..334 2150 100 Minus
2R 25286936 2R 7466263..7466479 333..117 1085 100 Minus
2R 25286936 2R 7465521..7465676 917..762 780 100 Minus
2R 25286936 2R 7466569..7466670 118..17 510 100 Minus
Blast to na_te.dros performed on 2015-02-11 05:10:55 has no hits.

BO07271.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 03:14:02 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:54:40 Download gff for BO07271.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11139-PA 1..901 17..917 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:21:40 Download gff for BO07271.5prime
Subject Subject Range Query Range Percent Splice Strand
p47-RA 85..990 11..917 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:37:50 Download gff for BO07271.5prime
Subject Subject Range Query Range Percent Splice Strand
p47-RA 85..990 11..917 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:37:50 Download gff for BO07271.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7465521..7465675 763..917 100 <- Minus
2R 7465779..7466207 334..762 100 <- Minus
2R 7466263..7466477 119..333 100 <- Minus
2R 7466569..7466675 11..118 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:21:40 Download gff for BO07271.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3353026..3353180 763..917 100 <- Minus
arm_2R 3353284..3353712 334..762 100 <- Minus
arm_2R 3353768..3353982 119..333 100 <- Minus
arm_2R 3354074..3354180 11..118 97   Minus

BO07271.complete Sequence

1255 bp (1255 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630728

> BO07271.complete
GAAGTTATCAGTCGACATGGCCGCGCGCGGCGATTTGATTGCACAGTTCA
TTGAGATCACCGGAACCGACGAGAACGTGGCCAGGTTCTACCTGTCCAGC
TGCGACTGGGACATCGAGCACGCGCTGGGCAACTACTGGAGCACCCAGGC
GGACCTGCCGGTTCCGGTGCCGACGGTGGGCCACGCGGACAACCCCAAAC
CAAAGCCGACATCGAGCAGCGGAGCAAGTGCATCGGCATCCGCTGCTGGG
GCCACCAAGAGTGCGGACTCAGCCGTCGCTACCTCGTCAGCTTCGGTGGA
CATCGCCCCGGCAGCGACCAAGGCCAAGCCAAAATTCGCAACGCTTAGCG
ACATGTCGAAGGAGTCGTCTAGTGACGATGACCAGCAGGCCTTCTATGCC
GGCGGCTCAGATCGCTCCGGTCAGCAAGTGCTGGGCCCGCCCAAGCGCAA
GAACTTCCGGGAGCAGCTCACCGACATGATGCGTTCTGCGCAGGAGCAAA
ACATCGCAGAGGTGGGGCCATCAACCAGCAGCGGCAGTGCCAGCGGAGGA
TCTGGCGGTGCCGTCTGGGGCCAAGGCATGCGGCTGGGCATGACCGATAA
TGACCACACGGCTGTGGGCACCAAAAAACCGGCTGCGACCATCGAAAACA
AGCCGGTGGTGGTGCTAAAGCTCTGGAGCCAGGGCTTCTCCATCGATGGC
GGTGAGCTTCGTCACTATGACGATCCGCAGAATAAGGAATTCCTAGAGAC
TGTCATGCGCGGGGAAATTCCGCAAGAGCTGCTGGAAATGGGGCGCATGG
TCAATGTGGATGTGGAGGACCACCGCCACGAGGACTTCAAACGTCAGCCA
GTTCCGCAGACTTTTAAGGGATCGGGCCAGAAGCTGGGCAGTCCCGTGGC
CAATTTGGTCACGGAAGCGCCAACAGTTCCAGTGGCATTGTCGCCCGGTG
AGGCTGCAAACCAGGAGGCTAGTGCCCGTGATGCCATTAACTTAAATTCC
GAAGCACCGTCCACTACGCTGCAGATTCGCCTAGCGGACGGTTCGCGTCT
AGCTGCGCAGTTTAATCTTTCGCACACCGTCTCCGACATTCGTCGTTTCA
TACAAACTGCACGCCCTCAGTACTCAACTAGTAATTTCATCCTGGTGTCC
TCGTTCCCCACTCGCGAGCTGAGCGACGACAATTCCACCATCGAGAAGGC
TGGCCTCAAGAACGCGGCACTCATGCAGCGCCTCAAGGCAAGCTTTCTAG
ACCAT

BO07271.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:31:36
Subject Length Description Subject Range Query Range Score Percent Strand
p47-RA 1224 CG11139-PA 1..1221 17..1237 6105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:38
Subject Length Description Subject Range Query Range Score Percent Strand
p47-RA 1432 CG11139-RA 90..1310 17..1237 6105 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7465778..7466207 763..334 2150 100 Minus
2R 25286936 2R 7465331..7465676 1107..762 1730 100 Minus
2R 25286936 2R 7466263..7466479 333..117 1085 100 Minus
2R 25286936 2R 7465140..7465269 1237..1108 650 100 Minus
2R 25286936 2R 7466569..7466670 118..17 510 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:31:35 has no hits.

BO07271.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:25 Download gff for BO07271.complete
Subject Subject Range Query Range Percent Splice Strand
p47-RA 1..1224 17..1241 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:36 Download gff for BO07271.complete
Subject Subject Range Query Range Percent Splice Strand
p47-RA 57..1292 11..1249 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:29:28 Download gff for BO07271.complete
Subject Subject Range Query Range Percent Splice Strand
p47-RA 90..1310 17..1239 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:25 Download gff for BO07271.complete
Subject Subject Range Query Range Percent Splice Strand
p47-RA 57..1292 11..1249 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:20 Download gff for BO07271.complete
Subject Subject Range Query Range Percent Splice Strand
p47-RA 90..1310 17..1239 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:20 Download gff for BO07271.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7466569..7466670 17..118 100   Minus
2R 7465138..7465269 1108..1239 98 <- Minus
2R 7465331..7465675 763..1107 100 <- Minus
2R 7465779..7466207 334..762 100 <- Minus
2R 7466263..7466477 119..333 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:29:28 Download gff for BO07271.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3354074..3354175 17..118 100   Minus
arm_2R 3352643..3352774 1108..1239 98 <- Minus
arm_2R 3352836..3353180 763..1107 100 <- Minus
arm_2R 3353284..3353712 334..762 100 <- Minus
arm_2R 3353768..3353982 119..333 100 <- Minus

BO07271.pep Sequence

Translation from 16 to 1255

> BO07271.pep
MAARGDLIAQFIEITGTDENVARFYLSSCDWDIEHALGNYWSTQADLPVP
VPTVGHADNPKPKPTSSSGASASASAAGATKSADSAVATSSASVDIAPAA
TKAKPKFATLSDMSKESSSDDDQQAFYAGGSDRSGQQVLGPPKRKNFREQ
LTDMMRSAQEQNIAEVGPSTSSGSASGGSGGAVWGQGMRLGMTDNDHTAV
GTKKPAATIENKPVVVLKLWSQGFSIDGGELRHYDDPQNKEFLETVMRGE
IPQELLEMGRMVNVDVEDHRHEDFKRQPVPQTFKGSGQKLGSPVANLVTE
APTVPVALSPGEAANQEASARDAINLNSEAPSTTLQIRLADGSRLAAQFN
LSHTVSDIRRFIQTARPQYSTSNFILVSSFPTRELSDDNSTIEKAGLKNA
ALMQRLKASFLDH

BO07271.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:21
Subject Length Description Subject Range Query Range Score Percent Strand
p47-PA 407 CG11139-PA 1..407 1..407 2072 100 Plus
CG42383-PA 353 CG4556-PA 7..335 8..406 396 29.2 Plus