Clone BO07275 Report

Search the DGRC for BO07275

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:72
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptRcd5-RA
Protein status:BO07275.pep: Imported from assembly
Sequenced Size:1768

Clone Sequence Records

BO07275.3prime Sequence

915 bp (830 high quality bases) assembled on 2005-12-04

> BO07275.3prime
ATGGTCTAGAAAGCTTGCGTTGAGGGGATTCGATGTCTTGGCGCTCTCCT
GGCGGATGGCGTTGATCAGCTCGTAGTTGACCAGGAAGGTGAAGCGCAGA
CCGGATATTTCCACTGTGCAGTTGTGACCGAGTCGAGCTTTGTTGGCGGA
TAGCAAAGGAGTGCCGTCGATAAAGATGGCCCTCTTTCCCTCGTTAGCGA
TGAAGAAATCCCCATTGCTGCGCAGCTTAATGGTTCCTTGGCGGCGAGAG
ATCTTCGCAGCCGGTCCCTCGAGCCCCAGATCCACGTCCACCACACAGTC
CTTGGCATCGCGACCAAATGTTATTTCCTTGGAACGCATTAGGTACCGCA
CATGGCGGCCACACAAGCAGGCCAGTGTCTGGTTGTCGAACTCGGAGGCA
GCGGTCGGACTAAGCACGGAATCCACCAGGACGGCCCAGCGCGAGAGCTC
GTTCTCCAGCAGGCGAATATTACGTTTGTTGCGACGATCTGCCAGAGCTC
GCTCCATCTCGAGAGCTTCGTCACGTGGCTCGTTCAGGTCGTGCTCGAAG
ATTTGATCTTCTGCATCCGAGAAGCTGAGTGGCTGCTGATCCGTGCCATA
TATAGGCTTCACTGACTGATCCGGCAACAGGGTGTACTGCTTGAGAAGAA
GCCAATGGTTTTGCAAGGATTTGGCAGTGCGGGCGCAGTAGAAAACGGAG
GCATTCTTATCCAGTAGCTCCTGGAACTGCTCAAGTTTTGGTTGTTCCGA
GCTCTTAATGGTGCCAAGCAGATCCTCCTCCTGCACGCTGTACAAAGCTT
TGCGCTGAACGGACTCCACGAGTTCGGGGTGCAGGTTCCTTATGGCGGAC
ACTGCAATCCTGGACACCGCAGGCTCATACAGCAGAGCATACCAGCGCTG
CTGTAGTTCCTGCAG

BO07275.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG1135-PA 1737 CG1135-RA 838..1734 915..19 4485 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd5-RA 1947 CG1135-RA 938..1834 915..19 4485 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:20:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4041753..4042484 750..19 3660 100 Minus
3L 28110227 3L 4041529..4041693 915..751 825 100 Minus
Blast to na_te.dros performed on 2015-02-04 20:20:53 has no hits.

BO07275.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:14:09 Download gff for BO07275.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1135-PA 838..1737 18..915 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:54:49 Download gff for BO07275.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1135-PA 838..1737 18..915 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:24:43 Download gff for BO07275.3prime
Subject Subject Range Query Range Percent Splice Strand
Rcd5-RA 938..1839 11..915 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:48:41 Download gff for BO07275.3prime
Subject Subject Range Query Range Percent Splice Strand
Rcd5-RA 938..1839 11..915 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:48:41 Download gff for BO07275.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4041529..4041693 751..915 100 -> Minus
3L 4041753..4042489 11..750 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:24:43 Download gff for BO07275.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4041529..4041693 751..915 100 -> Minus
arm_3L 4041753..4042489 11..750 99   Minus

BO07275.5prime Sequence

943 bp (829 high quality bases) assembled on 2005-12-04

> BO07275.5prime
GAAGTTATCAGTCGACATGGAGGCATCAAGAATAACCGCGATCGCCAGCA
GTGCAGTGTCCGTTACCGCTCCCAATCCCCCCACAGTGTCCACCATTCCC
ACAGCAGCTGCGAGCACACTAATCCAGGTAGGCGTGTCGCCAGCAACAAC
AACCATGCCAACACCAGCAGCCACAACAACAACAACCACAATAGGAAGTA
CAGCTAGCAGTGCCGTTGGAATTTCAACGCCGATACGAAATCCCATTTCA
AATCTGCAGATAGAACAGCAAAACGATCAAAAGCGAAGAAGTTCATCGCG
GACGATTAAAAGGAAGCGTTTTGATGACGAAATAGTTGAGTACAACATTG
CGGTGCCCACAAATCGCAGCGGAACAGACGCCAATCGCAGCAGCAGGCCT
CGCACCACCTCCCAGAATTATCCAGCTTTGGTGGGCGTGCCGCACACCAC
GTTAGCGCCTCTTAACATACCCACTTCCACGCCACAGACGCCGCTTTCAG
TTGATTCCCTGCTGCCGGGGACACCTAGCACTGTTGCATCGCTGTCACTG
GCCACGCCCACAACGCCAGCTCCCTTGGCCACTCCCCTTCCAGTTGCCCC
AATTGTGACTGCCGTCGCGCATCCCAAACCACCGGCCATGGAGCGCTCCA
CGACCAGCGAGCGCCGTTCGCGCCCAGTGCGTCCTGCCAGCAAAAAGGCG
CAGCGTAGAAATGGTCGTCCCATGGGTCAGATGGCCACCAAGGATTTGGG
CCGCTGGAAGCCCATTGACGACTTGGCCCTCATAATTGGCATCCAGCAGA
CCAACGATCTGCGGATAATCCATCGCGGCGTTAAGTTTTCCCTGCAGTTT
ACTCTGCAGGAACTACAGCAGCGCTGGTATGCTCTGCTGTATGAGCCTGC
GGTGTCCAGGATTGCAGTGTCCGCCATAAGGAACCTGCACCCC

BO07275.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG1135-PA 1737 CG1135-RA 1..825 17..841 4125 100 Plus
CG1135-PA 1737 CG1135-RA 830..927 846..943 490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd5-RA 1947 CG1135-RA 101..1027 17..943 4590 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:57:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4040965..4041618 290..943 3210 99.4 Plus
3L 28110227 3L 4040629..4040903 17..291 1375 100 Plus
Blast to na_te.dros performed on 2015-02-12 09:57:35 has no hits.

BO07275.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:14:10 Download gff for BO07275.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1135-PA 1..927 17..943 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:54:51 Download gff for BO07275.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1135-PA 1..927 17..943 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:44:19 Download gff for BO07275.5prime
Subject Subject Range Query Range Percent Splice Strand
Rcd5-RA 94..1027 6..943 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:56:33 Download gff for BO07275.5prime
Subject Subject Range Query Range Percent Splice Strand
Rcd5-RA 94..1027 6..943 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:56:33 Download gff for BO07275.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4040627..4040903 16..291 99 -> Plus
3L 4040967..4041618 292..943 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:44:19 Download gff for BO07275.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4040627..4040903 16..291 99 -> Plus
arm_3L 4040967..4041618 292..943 99   Plus

BO07275.complete Sequence

1768 bp assembled on 2008-08-14

GenBank Submission: FJ630730

> BO07275.complete
GAAGTTATCAGTCGACATGGAGGCATCAAGAATAACCGCGATCGCCAGCA
GTGCAGTGTCCGTTACCGCTCCCAATCCCCCCACAGTGTCCACCATTCCC
ACAGCAGCTGCGAGCACACTAATCCAGGTAGGCGTGTCGCCAGCAACAAC
AACCATGCCAACACCAGCAGCCACAACAACAACAACCACAATAGGAAGTA
CAGCTAGCAGTGCCGTTGGAATTTCAACGCCGATACGAAATCCCATTTCA
AATCTGCAGATAGAACAGCAAAACGATCAAAAGCGAAGAAGTTCATCGCG
GACGATTAAAAGGAAGCGTTTTGATGACGAAATAGTTGAGTACAACATTG
CGGTGCCCACAAATCGCAGCGGAACAGACGCCAATCGCAGCAGCAGGCCT
CGCACCACCTCCCAGAATTATCCAGCTTTGGTGGGCGTGCCGCACACCAC
GTTAGCGCCTCTTAACATACCCACTTCCACGCCACAGACGCCGCTTTCAG
TTGATTCCCTGCTGCCGGGGACACCTAGCACTGTTGCATCGCTGTCACTG
GCCACGCCCACAACGCCAGCTCCCTTGGCCACTCCCCTTCCAGTTGCCCC
AATTGTGACTGCCGTCGCGCATCCCAAACCACCGGCCATGGAGCGCTCCA
CGACCAGCGAGCGCCGTTCGCGCCCAGTGCGTCCTGCCAGCAAAAAGGCG
CAGCGTAGAAATGGTCGTCCCATGGGTCAGATGGCCACCAAGGATTTGGG
CCGCTGGAAGCCCATTGACGACTTGGCCCTCATAATTGGCATCCAGCAGA
CCAACGATCTGCGGATAATCCATCGCGGCGTTAAGTTTTCCTGCAAGTTT
ACTCTGCAGGAACTACAGCAGCGCTGGTATGCTCTGCTGTATGAGCCTGC
GGTGTCCAGGATTGCAGTGTCCGCCATAAGGAACCTGCACCCCGAACTCG
TGGAGTCCGTTCAGCGCAAAGCTTTGTACAGCGTGCAGGAGGAGGATCTG
CTTGGCACCATTAAGAGCTCGGAACAACCAAAACTTGAGCAGTTCCAGGA
GCTACTGGATAAGAATGCCTCCGTTTTCTACTGCGCCCGCACTGCCAAAT
CCTTGCAAAACCATTGGCTTCTTCTCAAGCAGTACACCCTGTTGCCGGAT
CAGTCAGTGAAGCCTATATATGGCACGGATCAGCAGCCACTCAGCTTCTC
GGATGCAGAAGATCAAATCTTCGAGCACGACCTGAACGAGCCACGTGACG
AAGCTCTCGAGATGGAGCGAGCTCTGGCAGATCGTCGCAACAAACGTAAT
ATTCGCCTGCTGGAGAACGAGCTCTCGCGCTGGGCCGTCCTGGTGGATTC
CGTGCTTAGTCCGACCGCTGCCTCCGAGTTCGACAACCAGACACTGGCCT
GCTTGTGTGGCCGCCATGTGCGGTACCTAATGCGTTCCAAGGAAATAACA
TTTGGTCGCGATGCCAAGGACTGTGTGGTGGACGTGGATCTGGGGCTCGA
GGGACCGGCTGCGAAGATCTCTCGCCGCCAAGGAACCATTAAGCTGCGCA
GCAATGGGGATTTCTTCATCGCTAACGAGGGAAAGAGGGCCATCTTTATC
GACGGCACTCCTTTGCTATCCGCCAACAAAGCTCGACTCGGTCACAACTG
CACAGTGGAAATATCCGGTCTGCGCTTCACCTTCCTGGTCAACTACGAGC
TGATCAACGCCATCCGCCAGGAGAGCGCCAAGACATCGAATCCCCTCAAC
GCAAGCTTTCTAGACCAT

BO07275.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:14:08
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd5-RA 1737 CG1135-PA 1..1734 17..1750 8670 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:09
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd5-RA 1947 CG1135-RA 101..1834 17..1750 8670 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4041753..4042484 1019..1750 3660 100 Plus
3L 28110227 3L 4040965..4041693 290..1018 3645 100 Plus
3L 28110227 3L 4040629..4040903 17..291 1375 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:14:07 has no hits.

BO07275.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:23 Download gff for BO07275.complete
Subject Subject Range Query Range Percent Splice Strand
CG1135-RA 89..1834 6..1758 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:43:17 Download gff for BO07275.complete
Subject Subject Range Query Range Percent Splice Strand
Rcd5-RA 101..1834 17..1752 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:00:09 Download gff for BO07275.complete
Subject Subject Range Query Range Percent Splice Strand
CG1135-RA 96..1829 17..1752 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:20 Download gff for BO07275.complete
Subject Subject Range Query Range Percent Splice Strand
Rcd5-RA 101..1834 17..1752 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:20 Download gff for BO07275.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4040629..4040903 17..291 100 -> Plus
3L 4040967..4041693 292..1018 100 -> Plus
3L 4041753..4042484 1019..1752 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:43:17 Download gff for BO07275.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4040629..4040903 17..291 100 -> Plus
arm_3L 4040967..4041693 292..1018 100 -> Plus
arm_3L 4041753..4042484 1019..1752 99   Plus

BO07275.pep Sequence

Translation from 16 to 1768

> BO07275.pep
MEASRITAIASSAVSVTAPNPPTVSTIPTAAASTLIQVGVSPATTTMPTP
AATTTTTTIGSTASSAVGISTPIRNPISNLQIEQQNDQKRRSSSRTIKRK
RFDDEIVEYNIAVPTNRSGTDANRSSRPRTTSQNYPALVGVPHTTLAPLN
IPTSTPQTPLSVDSLLPGTPSTVASLSLATPTTPAPLATPLPVAPIVTAV
AHPKPPAMERSTTSERRSRPVRPASKKAQRRNGRPMGQMATKDLGRWKPI
DDLALIIGIQQTNDLRIIHRGVKFSCKFTLQELQQRWYALLYEPAVSRIA
VSAIRNLHPELVESVQRKALYSVQEEDLLGTIKSSEQPKLEQFQELLDKN
ASVFYCARTAKSLQNHWLLLKQYTLLPDQSVKPIYGTDQQPLSFSDAEDQ
IFEHDLNEPRDEALEMERALADRRNKRNIRLLENELSRWAVLVDSVLSPT
AASEFDNQTLACLCGRHVRYLMRSKEITFGRDAKDCVVDVDLGLEGPAAK
ISRRQGTIKLRSNGDFFIANEGKRAIFIDGTPLLSANKARLGHNCTVEIS
GLRFTFLVNYELINAIRQESAKTSNPLNASFLDH

BO07275.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:44:42
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd5-PA 578 CG1135-PA 1..578 1..578 2928 100 Plus