Clone Sequence Records
BO07275.3prime Sequence
915 bp (830 high quality bases) assembled on 2005-12-04
> BO07275.3prime
ATGGTCTAGAAAGCTTGCGTTGAGGGGATTCGATGTCTTGGCGCTCTCCT
GGCGGATGGCGTTGATCAGCTCGTAGTTGACCAGGAAGGTGAAGCGCAGA
CCGGATATTTCCACTGTGCAGTTGTGACCGAGTCGAGCTTTGTTGGCGGA
TAGCAAAGGAGTGCCGTCGATAAAGATGGCCCTCTTTCCCTCGTTAGCGA
TGAAGAAATCCCCATTGCTGCGCAGCTTAATGGTTCCTTGGCGGCGAGAG
ATCTTCGCAGCCGGTCCCTCGAGCCCCAGATCCACGTCCACCACACAGTC
CTTGGCATCGCGACCAAATGTTATTTCCTTGGAACGCATTAGGTACCGCA
CATGGCGGCCACACAAGCAGGCCAGTGTCTGGTTGTCGAACTCGGAGGCA
GCGGTCGGACTAAGCACGGAATCCACCAGGACGGCCCAGCGCGAGAGCTC
GTTCTCCAGCAGGCGAATATTACGTTTGTTGCGACGATCTGCCAGAGCTC
GCTCCATCTCGAGAGCTTCGTCACGTGGCTCGTTCAGGTCGTGCTCGAAG
ATTTGATCTTCTGCATCCGAGAAGCTGAGTGGCTGCTGATCCGTGCCATA
TATAGGCTTCACTGACTGATCCGGCAACAGGGTGTACTGCTTGAGAAGAA
GCCAATGGTTTTGCAAGGATTTGGCAGTGCGGGCGCAGTAGAAAACGGAG
GCATTCTTATCCAGTAGCTCCTGGAACTGCTCAAGTTTTGGTTGTTCCGA
GCTCTTAATGGTGCCAAGCAGATCCTCCTCCTGCACGCTGTACAAAGCTT
TGCGCTGAACGGACTCCACGAGTTCGGGGTGCAGGTTCCTTATGGCGGAC
ACTGCAATCCTGGACACCGCAGGCTCATACAGCAGAGCATACCAGCGCTG
CTGTAGTTCCTGCAG
BO07275.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1135-PA | 1737 | CG1135-RA | 838..1734 | 915..19 | 4485 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:20:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcd5-RA | 1947 | CG1135-RA | 938..1834 | 915..19 | 4485 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:20:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4041753..4042484 | 750..19 | 3660 | 100 | Minus |
3L | 28110227 | 3L | 4041529..4041693 | 915..751 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 20:20:53 has no hits.
BO07275.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:14:09 Download gff for
BO07275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1135-PA | 838..1737 | 18..915 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:54:49 Download gff for
BO07275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1135-PA | 838..1737 | 18..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:24:43 Download gff for
BO07275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rcd5-RA | 938..1839 | 11..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:48:41 Download gff for
BO07275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rcd5-RA | 938..1839 | 11..915 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:48:41 Download gff for
BO07275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4041529..4041693 | 751..915 | 100 | -> | Minus |
3L | 4041753..4042489 | 11..750 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:24:43 Download gff for
BO07275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4041529..4041693 | 751..915 | 100 | -> | Minus |
arm_3L | 4041753..4042489 | 11..750 | 99 | | Minus |
BO07275.5prime Sequence
943 bp (829 high quality bases) assembled on 2005-12-04
> BO07275.5prime
GAAGTTATCAGTCGACATGGAGGCATCAAGAATAACCGCGATCGCCAGCA
GTGCAGTGTCCGTTACCGCTCCCAATCCCCCCACAGTGTCCACCATTCCC
ACAGCAGCTGCGAGCACACTAATCCAGGTAGGCGTGTCGCCAGCAACAAC
AACCATGCCAACACCAGCAGCCACAACAACAACAACCACAATAGGAAGTA
CAGCTAGCAGTGCCGTTGGAATTTCAACGCCGATACGAAATCCCATTTCA
AATCTGCAGATAGAACAGCAAAACGATCAAAAGCGAAGAAGTTCATCGCG
GACGATTAAAAGGAAGCGTTTTGATGACGAAATAGTTGAGTACAACATTG
CGGTGCCCACAAATCGCAGCGGAACAGACGCCAATCGCAGCAGCAGGCCT
CGCACCACCTCCCAGAATTATCCAGCTTTGGTGGGCGTGCCGCACACCAC
GTTAGCGCCTCTTAACATACCCACTTCCACGCCACAGACGCCGCTTTCAG
TTGATTCCCTGCTGCCGGGGACACCTAGCACTGTTGCATCGCTGTCACTG
GCCACGCCCACAACGCCAGCTCCCTTGGCCACTCCCCTTCCAGTTGCCCC
AATTGTGACTGCCGTCGCGCATCCCAAACCACCGGCCATGGAGCGCTCCA
CGACCAGCGAGCGCCGTTCGCGCCCAGTGCGTCCTGCCAGCAAAAAGGCG
CAGCGTAGAAATGGTCGTCCCATGGGTCAGATGGCCACCAAGGATTTGGG
CCGCTGGAAGCCCATTGACGACTTGGCCCTCATAATTGGCATCCAGCAGA
CCAACGATCTGCGGATAATCCATCGCGGCGTTAAGTTTTCCCTGCAGTTT
ACTCTGCAGGAACTACAGCAGCGCTGGTATGCTCTGCTGTATGAGCCTGC
GGTGTCCAGGATTGCAGTGTCCGCCATAAGGAACCTGCACCCC
BO07275.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1135-PA | 1737 | CG1135-RA | 1..825 | 17..841 | 4125 | 100 | Plus |
CG1135-PA | 1737 | CG1135-RA | 830..927 | 846..943 | 490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:57:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcd5-RA | 1947 | CG1135-RA | 101..1027 | 17..943 | 4590 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:57:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4040965..4041618 | 290..943 | 3210 | 99.4 | Plus |
3L | 28110227 | 3L | 4040629..4040903 | 17..291 | 1375 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 09:57:35 has no hits.
BO07275.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:14:10 Download gff for
BO07275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1135-PA | 1..927 | 17..943 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:54:51 Download gff for
BO07275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1135-PA | 1..927 | 17..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:44:19 Download gff for
BO07275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rcd5-RA | 94..1027 | 6..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:56:33 Download gff for
BO07275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rcd5-RA | 94..1027 | 6..943 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:56:33 Download gff for
BO07275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4040627..4040903 | 16..291 | 99 | -> | Plus |
3L | 4040967..4041618 | 292..943 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:44:19 Download gff for
BO07275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4040627..4040903 | 16..291 | 99 | -> | Plus |
arm_3L | 4040967..4041618 | 292..943 | 99 | | Plus |
BO07275.complete Sequence
1768 bp assembled on 2008-08-14
GenBank Submission: FJ630730
> BO07275.complete
GAAGTTATCAGTCGACATGGAGGCATCAAGAATAACCGCGATCGCCAGCA
GTGCAGTGTCCGTTACCGCTCCCAATCCCCCCACAGTGTCCACCATTCCC
ACAGCAGCTGCGAGCACACTAATCCAGGTAGGCGTGTCGCCAGCAACAAC
AACCATGCCAACACCAGCAGCCACAACAACAACAACCACAATAGGAAGTA
CAGCTAGCAGTGCCGTTGGAATTTCAACGCCGATACGAAATCCCATTTCA
AATCTGCAGATAGAACAGCAAAACGATCAAAAGCGAAGAAGTTCATCGCG
GACGATTAAAAGGAAGCGTTTTGATGACGAAATAGTTGAGTACAACATTG
CGGTGCCCACAAATCGCAGCGGAACAGACGCCAATCGCAGCAGCAGGCCT
CGCACCACCTCCCAGAATTATCCAGCTTTGGTGGGCGTGCCGCACACCAC
GTTAGCGCCTCTTAACATACCCACTTCCACGCCACAGACGCCGCTTTCAG
TTGATTCCCTGCTGCCGGGGACACCTAGCACTGTTGCATCGCTGTCACTG
GCCACGCCCACAACGCCAGCTCCCTTGGCCACTCCCCTTCCAGTTGCCCC
AATTGTGACTGCCGTCGCGCATCCCAAACCACCGGCCATGGAGCGCTCCA
CGACCAGCGAGCGCCGTTCGCGCCCAGTGCGTCCTGCCAGCAAAAAGGCG
CAGCGTAGAAATGGTCGTCCCATGGGTCAGATGGCCACCAAGGATTTGGG
CCGCTGGAAGCCCATTGACGACTTGGCCCTCATAATTGGCATCCAGCAGA
CCAACGATCTGCGGATAATCCATCGCGGCGTTAAGTTTTCCTGCAAGTTT
ACTCTGCAGGAACTACAGCAGCGCTGGTATGCTCTGCTGTATGAGCCTGC
GGTGTCCAGGATTGCAGTGTCCGCCATAAGGAACCTGCACCCCGAACTCG
TGGAGTCCGTTCAGCGCAAAGCTTTGTACAGCGTGCAGGAGGAGGATCTG
CTTGGCACCATTAAGAGCTCGGAACAACCAAAACTTGAGCAGTTCCAGGA
GCTACTGGATAAGAATGCCTCCGTTTTCTACTGCGCCCGCACTGCCAAAT
CCTTGCAAAACCATTGGCTTCTTCTCAAGCAGTACACCCTGTTGCCGGAT
CAGTCAGTGAAGCCTATATATGGCACGGATCAGCAGCCACTCAGCTTCTC
GGATGCAGAAGATCAAATCTTCGAGCACGACCTGAACGAGCCACGTGACG
AAGCTCTCGAGATGGAGCGAGCTCTGGCAGATCGTCGCAACAAACGTAAT
ATTCGCCTGCTGGAGAACGAGCTCTCGCGCTGGGCCGTCCTGGTGGATTC
CGTGCTTAGTCCGACCGCTGCCTCCGAGTTCGACAACCAGACACTGGCCT
GCTTGTGTGGCCGCCATGTGCGGTACCTAATGCGTTCCAAGGAAATAACA
TTTGGTCGCGATGCCAAGGACTGTGTGGTGGACGTGGATCTGGGGCTCGA
GGGACCGGCTGCGAAGATCTCTCGCCGCCAAGGAACCATTAAGCTGCGCA
GCAATGGGGATTTCTTCATCGCTAACGAGGGAAAGAGGGCCATCTTTATC
GACGGCACTCCTTTGCTATCCGCCAACAAAGCTCGACTCGGTCACAACTG
CACAGTGGAAATATCCGGTCTGCGCTTCACCTTCCTGGTCAACTACGAGC
TGATCAACGCCATCCGCCAGGAGAGCGCCAAGACATCGAATCCCCTCAAC
GCAAGCTTTCTAGACCAT
BO07275.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:14:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcd5-RA | 1737 | CG1135-PA | 1..1734 | 17..1750 | 8670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcd5-RA | 1947 | CG1135-RA | 101..1834 | 17..1750 | 8670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4041753..4042484 | 1019..1750 | 3660 | 100 | Plus |
3L | 28110227 | 3L | 4040965..4041693 | 290..1018 | 3645 | 100 | Plus |
3L | 28110227 | 3L | 4040629..4040903 | 17..291 | 1375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:14:07 has no hits.
BO07275.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:23 Download gff for
BO07275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1135-RA | 89..1834 | 6..1758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:43:17 Download gff for
BO07275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rcd5-RA | 101..1834 | 17..1752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:00:09 Download gff for
BO07275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1135-RA | 96..1829 | 17..1752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:20 Download gff for
BO07275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rcd5-RA | 101..1834 | 17..1752 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:20 Download gff for
BO07275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4040629..4040903 | 17..291 | 100 | -> | Plus |
3L | 4040967..4041693 | 292..1018 | 100 | -> | Plus |
3L | 4041753..4042484 | 1019..1752 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:43:17 Download gff for
BO07275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4040629..4040903 | 17..291 | 100 | -> | Plus |
arm_3L | 4040967..4041693 | 292..1018 | 100 | -> | Plus |
arm_3L | 4041753..4042484 | 1019..1752 | 99 | | Plus |
BO07275.pep Sequence
Translation from 16 to 1768
> BO07275.pep
MEASRITAIASSAVSVTAPNPPTVSTIPTAAASTLIQVGVSPATTTMPTP
AATTTTTTIGSTASSAVGISTPIRNPISNLQIEQQNDQKRRSSSRTIKRK
RFDDEIVEYNIAVPTNRSGTDANRSSRPRTTSQNYPALVGVPHTTLAPLN
IPTSTPQTPLSVDSLLPGTPSTVASLSLATPTTPAPLATPLPVAPIVTAV
AHPKPPAMERSTTSERRSRPVRPASKKAQRRNGRPMGQMATKDLGRWKPI
DDLALIIGIQQTNDLRIIHRGVKFSCKFTLQELQQRWYALLYEPAVSRIA
VSAIRNLHPELVESVQRKALYSVQEEDLLGTIKSSEQPKLEQFQELLDKN
ASVFYCARTAKSLQNHWLLLKQYTLLPDQSVKPIYGTDQQPLSFSDAEDQ
IFEHDLNEPRDEALEMERALADRRNKRNIRLLENELSRWAVLVDSVLSPT
AASEFDNQTLACLCGRHVRYLMRSKEITFGRDAKDCVVDVDLGLEGPAAK
ISRRQGTIKLRSNGDFFIANEGKRAIFIDGTPLLSANKARLGHNCTVEIS
GLRFTFLVNYELINAIRQESAKTSNPLNASFLDH
BO07275.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:44:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcd5-PA | 578 | CG1135-PA | 1..578 | 1..578 | 2928 | 100 | Plus |