Clone Sequence Records
BO07279.3prime Sequence
806 bp (747 high quality bases) assembled on 2005-12-04
> BO07279.3prime
ATGGTCTAGAAAGCTTGCGACTGATGTAACTGAAAACAATAGGAAGTTAA
TTGAGTTTCTTAAGGGAGAACTAACCAACCCGCTGTAGAAATGCTGCAGG
GCCTTGCAGGTGTCCAAACAGGTGTCTGTATCTCCACTGCCTAGCGAATT
TATGCAGCGGCGCATCAGTTCACCAGTAAGATCCGAAAGTCCAAGTATAT
ATTCCGTGGGGTCTACGAAAAACTGGAACTTCTTTGGGCTCTCAACCTGA
GCTATAGCCTGAACATCTTCGCCTTCAGTTGGTTCTTCCTTTGGCTGGCT
GCTCTCCTCGACGTACTGCATCACCGCCTGAATGGCCTGCCAATCTGAAA
CGCTCTTGGTTTCGTTCTCGCCCTCAGCATCCTCGTGGCACAGGTACTCC
ATGTAGGTGTAGGCCTCGATAAACTCCTGCAATCCTGGAGAGTAGGAGCT
GCGGAACTGGTAGACATCCTGGTCGCGCAGTTCCAGGGCCACAGCCCTAA
AGTTAACCGCGATCAGCTTGTTCAGTCGCTGACGTGCCTCCTCCAGGACC
TTCTCCTTATTCTGCTTACGCGAGTCAATGGAGTGCAGCAGGAAGATGAT
ACGCTTGGACTCGATGGTAATGTCACGGCTCAGCTTGACAATTCGCTCGT
GGCGATCGTGTTTCATGATCAATTCATTAGAATAAATTCGAAATTGTTGG
ACAATGGGACTGTCTTCATCCAGCTGGGCAGCCGGTATTTGGCGCTTCCT
GGGAGCAGTGTTCCTGTGACCAGCACCTCCGTTTTTCGGCATGTCGACTG
ATAACT
BO07279.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5063-PA | 777 | Trax-RA | 1..774 | 792..19 | 3870 | 100 | Minus |
| CG5063-PB | 879 | Trax-RB | 1..717 | 792..76 | 3585 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:21:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trax-RA | 1127 | CG5063-RA | 134..907 | 792..19 | 3870 | 100 | Minus |
| Trax-RB | 1077 | CG5063-RB | 134..846 | 792..80 | 3565 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:21:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15361825..15362598 | 792..19 | 3870 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:21:04 has no hits.
BO07279.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:14:16 Download gff for
BO07279.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trax-PA | 1..777 | 15..792 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:54:58 Download gff for
BO07279.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5063-PA | 1..777 | 15..792 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:11:02 Download gff for
BO07279.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trax-RA | 126..919 | 5..803 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:41:23 Download gff for
BO07279.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trax-RA | 126..919 | 5..803 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:41:23 Download gff for
BO07279.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15361817..15362610 | 5..803 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:11:02 Download gff for
BO07279.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11187539..11188332 | 5..803 | 98 | | Minus |
BO07279.5prime Sequence
806 bp (747 high quality bases) assembled on 2005-12-04
> BO07279.5prime
GAAGTTATCAGTCGACATGCCGAAAAACGGAGGTGCTGGTCACAGGAACA
CTGCTCCCAGGAAGCGCCAAATACCGGCTGCCCAGCTGGATGAAGACAGT
CCCATTGTCCAACAATTTCGAATTTATTCTAATGAATTGATCATGAAACA
CGATCGCCACGAGCGAATTGTCAAGCTGAGCCGTGACATTACCATCGAGT
CCAAGCGTATCATCTTCCTGCTGCACTCCATTGACTCGCGTAAGCAGAAT
AAGGAGAAGGTCCTGGAGGAGGCACGTCAGCGACTGAACAAGCTGATCGC
GGTTAACTTTAGGGCTGTGGCCCTGGAACTGCGCGACCAGGATGTCTACC
AGTTCCGCAGCTCCTACTCTCCAGGATTGCAGGAGTTTATCGAGGCCTAC
ACCTACATGGAGTACCTGTGCCACGAGGATGCTGAGGGCGAGAACGAAAC
CAAGAGCGTTTCAGATTGGCAGGCCATTCAGGCGGTGATGCAGTACGTCG
AGGAGAGCAGCCAGCCAAAGGAAGAACCAACTGAAGGCGAAGATGTTCAG
GCTATAGCTCAGGTTGAGAGCCCAAAGAAGTTCCAGTTTTTCGTAGACCC
CACGGAATATATACTTGGACTTTCGGATCTTACTGGTGAACTGATGCGCC
GCTGCATAAATTCGCTAGGCAGTGGAGATACAGACACCTGTTTGGACACC
TGCAAGGCCCTGCAGCATTTCTACAGCGGGTTGGTTAGTTCTCCCTTAAG
AAACTCAATTAACTTCCTATTGTTTTCAGTTACATCAGTCGCAAGCTTTC
TAGACC
BO07279.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5063-PA | 777 | Trax-RA | 1..774 | 17..790 | 3870 | 100 | Plus |
| CG5063-PB | 879 | Trax-RB | 1..717 | 17..733 | 3585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:31:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trax-RA | 1127 | CG5063-RA | 134..907 | 17..790 | 3870 | 100 | Plus |
| Trax-RB | 1077 | CG5063-RB | 134..846 | 17..729 | 3565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:31:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15361825..15362598 | 17..790 | 3870 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 19:31:36 has no hits.
BO07279.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:14:17 Download gff for
BO07279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trax-PA | 1..777 | 17..794 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:55:00 Download gff for
BO07279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5063-PA | 1..777 | 17..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:08:39 Download gff for
BO07279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trax-RA | 126..919 | 6..804 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:19:56 Download gff for
BO07279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trax-RA | 126..919 | 6..804 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:19:56 Download gff for
BO07279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15361817..15362610 | 6..804 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:08:39 Download gff for
BO07279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11187539..11188332 | 6..804 | 98 | | Plus |
BO07279.complete Sequence
808 bp (808 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630731
> BO07279.complete
GAAGTTATCAGTCGACATGCCGAAAAACGGAGGTGCTGGTCACAGGAACA
CTGCTCCCAGGAAGCGCCAAATACCGGCTGCCCAGCTGGATGAAGACAGT
CCCATTGTCCAACAATTTCGAATTTATTCTAATGAATTGATCATGAAACA
CGATCGCCACGAGCGAATTGTCAAGCTGAGCCGTGACATTACCATCGAGT
CCAAGCGTATCATCTTCCTGCTGCACTCCATTGACTCGCGTAAGCAGAAT
AAGGAGAAGGTCCTGGAGGAGGCACGTCAGCGACTGAACAAGCTGATCGC
GGTTAACTTTAGGGCTGTGGCCCTGGAACTGCGCGACCAGGATGTCTACC
AGTTCCGCAGCTCCTACTCTCCAGGATTGCAGGAGTTTATCGAGGCCTAC
ACCTACATGGAGTACCTGTGCCACGAGGATGCTGAGGGCGAGAACGAAAC
CAAGAGCGTTTCAGATTGGCAGGCCATTCAGGCGGTGATGCAGTACGTCG
AGGAGAGCAGCCAGCCAAAGGAAGAACCAACTGAAGGCGAAGATGTTCAG
GCTATAGCTCAGGTTGAGAGCCCAAAGAAGTTCCAGTTTTTCGTAGACCC
CACGGAATATATACTTGGACTTTCGGATCTTACTGGTGAACTGATGCGCC
GCTGCATAAATTCGCTAGGCAGTGGAGATACAGACACCTGTTTGGACACC
TGCAAGGCCCTGCAGCATTTCTACAGCGGGTTGGTTAGTTCTCCCTTAAG
AAACTCAATTAACTTCCTATTGTTTTCAGTTACATCAGTCGCAAGCTTTC
TAGACCAT
BO07279.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:36:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trax-RA | 777 | CG5063-PA | 1..774 | 17..790 | 3870 | 100 | Plus |
| Trax-RB | 897 | CG5063-PB | 1..713 | 17..729 | 3565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:36:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trax-RA | 1127 | CG5063-RA | 134..907 | 17..790 | 3870 | 100 | Plus |
| Trax-RB | 1077 | CG5063-RB | 134..846 | 17..729 | 3565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:36:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15361825..15362598 | 17..790 | 3870 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:36:27 has no hits.
BO07279.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:13 Download gff for
BO07279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trax-RA | 1..777 | 17..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:22 Download gff for
BO07279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trax-RA | 94..887 | 6..804 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:00 Download gff for
BO07279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trax-RA | 134..907 | 17..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:13 Download gff for
BO07279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trax-RA | 94..887 | 6..804 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:01 Download gff for
BO07279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trax-RA | 134..907 | 17..792 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:01 Download gff for
BO07279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15361825..15362598 | 17..792 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:00 Download gff for
BO07279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11187547..11188320 | 17..792 | 99 | | Plus |
BO07279.pep Sequence
Translation from 16 to 808
> BO07279.pep
MPKNGGAGHRNTAPRKRQIPAAQLDEDSPIVQQFRIYSNELIMKHDRHER
IVKLSRDITIESKRIIFLLHSIDSRKQNKEKVLEEARQRLNKLIAVNFRA
VALELRDQDVYQFRSSYSPGLQEFIEAYTYMEYLCHEDAEGENETKSVSD
WQAIQAVMQYVEESSQPKEEPTEGEDVQAIAQVESPKKFQFFVDPTEYIL
GLSDLTGELMRRCINSLGSGDTDTCLDTCKALQHFYSGLVSSPLRNSINF
LLFSVTSVASFLDH
BO07279.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trax-PA | 258 | CG5063-PA | 1..258 | 1..258 | 1322 | 100 | Plus |
| Trax-PB | 298 | CG5063-PB | 1..241 | 1..241 | 1235 | 99.2 | Plus |
