Clone Sequence Records
BO07280.3prime Sequence
948 bp (894 high quality bases) assembled on 2005-12-04
> BO07280.3prime
ATGGTCTAGAAAGCTTGCCTTCCGTTTTCTGCACTTGTTGCGTCCCTTTC
GCCTCCTGCCTGGCGTTTTGCTTGGCGACTTGCCATTCTTAGCGGCCGCA
GCCTGCTGTTGCTGAGTCTTGGGCGTGGATGCAGTGCCTGCTGCGGTGCT
TCCGCCTGCACTGGCGGTGGTGCTCTGCTTGCTGATCCGATTGGCAGCAC
CCTGGCCACTGACCTTCTTCGACGGAAGCAAATGCTGGCTAACCAGCTCG
CCCAGGACGCCCTGGTGGGCCAGCATAGAGAGGAAAGTGCAAATGAACTT
ATCGTAGTTGTGGGTACGTCGACTGGCGTCCACCTTAAACATGTGCCTCC
GATCGTTTTCGTCAGCCAGATGCTGCTCATTGATGGCTATTTCTGTGTCC
AGGTTCTTGAGAAGCGATTGCAGGTCACGTGCGGTGAAAGCGCTCGGCTC
CAATAATGTGGTGGGTGTATCCGGACGTTGTGAGTCTCCGTTCCCCGATT
CGCCCTGCTCGTCGGCCTTTAGAAGTTTCTGCAGTGTTCCGGACACGATT
GCCTGGTTTGTGCGCAGCATCTTAAGTTTATGTGTTATGGCAATCCGCCT
GTCTGGCACTACGGCCATGAGATTGAAACGTATGTCCTGTTCGCCGGTCG
CTATTCCCAGTCGCTCAGCCATCACACGTCGGAACTTATCTGTCCAATCC
TCGCTATCCTCCCAACCGCCGTGATTCATGGGATACGGTTTCAAGCCATC
CAGCTCAAACAGTTGTCCATTGATAGGCACAAAGCTAACGAAGTGAAACG
CCTCACCCGTGAAGCGGCAACTTGAGACGCCCGCTCCCGTCCTTTCTAGA
CGGCGCCGAGCCTGCGGCATTGCGTGTGAGTTATGGGCACAGGCCAGCTC
CCGGAGTGTGCCNATAGCCAGCCCCTTGTTCTCCGGACTCATGCCTTT
BO07280.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8445-PA | 1416 | CG8445-RA | 531..1413 | 901..19 | 4415 | 100 | Minus |
CG8445-PB | 1416 | CG8445-RB | 531..1413 | 901..19 | 4415 | 100 | Minus |
CG8445-PA | 1416 | CG8445-RA | 484..523 | 948..909 | 181 | 97.5 | Minus |
CG8445-PB | 1416 | CG8445-RB | 484..523 | 948..909 | 181 | 97.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:21:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
calypso-RA | 2147 | CG8445-RA | 842..1771 | 948..19 | 4594 | 99.7 | Minus |
calypso-RB | 2117 | CG8445-RB | 812..1741 | 948..19 | 4594 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:21:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16194438..16195367 | 19..948 | 4549 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:21:13 has no hits.
BO07280.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:14:18 Download gff for
BO07280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8445-PB | 484..1416 | 18..948 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:55:01 Download gff for
BO07280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8445-PB | 484..1416 | 18..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:11:05 Download gff for
BO07280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
calypso-RB | 812..1746 | 13..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:41:47 Download gff for
BO07280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
calypso-RB | 812..1746 | 13..948 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:41:47 Download gff for
BO07280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16194433..16195367 | 13..948 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:11:05 Download gff for
BO07280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12081938..12082872 | 13..948 | 99 | | Plus |
BO07280.5prime Sequence
924 bp (853 high quality bases) assembled on 2005-12-04
> BO07280.5prime
GAAGTTATCAGTCGACATGAACGCTGCTGGAGGAGGTAGTGGTGCCCAGG
CGGCCGCAGTGGCGGCAGGCAACAACAGTCTCAGCCACAATGCGCTACTT
TCCACGGCCTCAGGAGCCACCACCATGCCTATGGCCCAACTGGCAGACGG
TTGGTTGGAGCTGGAGTCCGACCCAGGTCTCTTCACACTGCTTCTCAAGG
ATTTTGGATGTCACGATGTACAGGTGGAGGAGGTGTACGACCTACAGAAA
CCCATCGAGAGTCCATATGGCTTCATATTTCTCTTCCGCTGGATCGAAGA
GCGACGCGCCAGACGCAAAATTGTGGAGACAACTGCTGAGATATTCGTCA
AGGATGAGGAGGCCATTTCCAGCATTTTCTTCGCCCAGCAGGTAGTCCCC
AATAGCTGTGCCACACACGCGTTGCTTTCGGTGCTCCTGAACTGCAACGA
GAACAATCTTCAGCTGGGCGACACCCTGAGTCGACTAAAAACCCACACCA
AAGGCATGAGTCCGGAGAACAAGGGGCTGGCTATTGGCAACACTCCGGAG
CTGGCCTGTGCCCATAACTCACACGCAATGCCGCAGGCTCGGCGCCGTCT
AGAAAGGACGGGAGCGGGCGTCTCAAGTTGCCGCTTCACGGGTGAGGCGT
TTCACTTCGTTAGCTTTGTGCCTATCAATGGACAACTGTTTGAGCTGGAT
GGCTTGAAACCGTATCCCATGAATCACGGCGGTTGGGAGGATAGCGAGGA
TTGGACAGATAAGTTCCGACGTGTGATGGCTGAGCGACTGGGAATAGCGA
CCGGCGAACAGGACATACGTTTCAATCTCATGGCCGTAGTGCCAGACAGG
CGGATTGGCATAACACATAAACTTAAGATGCTGCGCACAAACCAGGCAAT
CGTGTCCGGAACACTGCAGAAACT
BO07280.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8445-PA | 1416 | CG8445-RA | 1..908 | 17..924 | 4515 | 99.8 | Plus |
CG8445-PB | 1416 | CG8445-RB | 1..908 | 17..924 | 4515 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:07:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
calypso-RA | 2147 | CG8445-RA | 359..1266 | 17..924 | 4525 | 99.9 | Plus |
calypso-RB | 2117 | CG8445-RB | 329..1236 | 17..924 | 4525 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:07:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16194943..16195657 | 924..210 | 3560 | 99.9 | Minus |
2R | 25286936 | 2R | 16195715..16195909 | 211..17 | 975 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:07:19 has no hits.
BO07280.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:14:19 Download gff for
BO07280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8445-PB | 1..908 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:55:02 Download gff for
BO07280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8445-PB | 1..908 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:45:01 Download gff for
BO07280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
calypso-RB | 329..1236 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:13 Download gff for
BO07280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
calypso-RB | 329..1236 | 17..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:13 Download gff for
BO07280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16194943..16195657 | 210..924 | 99 | <- | Minus |
2R | 16195717..16195909 | 17..209 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:45:01 Download gff for
BO07280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12082448..12083162 | 210..924 | 99 | <- | Minus |
arm_2R | 12083222..12083414 | 17..209 | 100 | | Minus |
BO07280.complete Sequence
1447 bp (1447 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630732
> BO07280.complete
GAAGTTATCAGTCGACATGAACGCTGCTGGAGGAGGTAGTGGTGCCCAGG
CGGCCGCAGTGGCGGCAGGCAACAACAGTCTCAGCCACAATGCGCTACTT
TCCACGGCCTCAGGAGCCACCACCATGCCTATGGCCCAACTGGCAGACGG
TTGGTTGGAGCTGGAGTCCGACCCAGGTCTCTTCACACTGCTTCTCAAGG
ATTTTGGATGTCACGATGTACAGGTGGAGGAGGTGTACGACCTACAGAAA
CCCATCGAGAGTCCATATGGCTTCATATTTCTCTTCCGCTGGATCGAAGA
GCGACGCGCCAGACGCAAAATTGTGGAGACAACTGCTGAGATATTCGTCA
AGGATGAGGAGGCCATTTCCAGCATTTTCTTCGCCCAGCAGGTAGTCCCC
AATAGCTGTGCCACACACGCGTTGCTTTCGGTGCTCCTGAACTGCAACGA
GAACAATCTTCAGCTGGGCGACACCCTGAGTCGACTAAAAACCCACACCA
AAGGCATGAGTCCGGAGAACAAGGGGCTGGCTATTGGCAACACTCCGGAG
CTGGCCTGTGCCCATAACTCACACGCAATGCCGCAGGCTCGGCGCCGTCT
AGAAAGGACGGGAGCGGGCGTCTCAAGTTGCCGCTTCACGGGTGAGGCGT
TTCACTTCGTTAGCTTTGTGCCTATCAATGGACAACTGTTTGAGCTGGAT
GGCTTGAAACCGTATCCCATGAATCACGGCGGTTGGGAGGATAGCGAGGA
TTGGACAGATAAGTTCCGACGTGTGATGGCTGAGCGACTGGGAATAGCGA
CCGGCGAACAGGACATACGTTTCAATCTCATGGCCGTAGTGCCAGACAGG
CGGATTGCCATAACACATAAACTTAAGATGCTGCGCACAAACCAGGCAAT
CGTGTCCGGAACACTGCAGAAACTTCTAAAGGCCGACGAGCAGGGCGAAT
CGGGGAACGGAGACTCACAACGTCCGGATACACCCACCACATTATTGGAG
CCGAGCGCTTTCACCGCACGTGACCTGCAATCGCTTCTCAAGAACCTGGA
CACAGAAATAGCCATCAATGAGCAGCATCTGGCTGACGAAAACGATCGGA
GGCACATGTTTAAGGTGGACGCCAGTCGACGTACCCACAACTACGATAAG
TTCATTTGCACTTTCCTCTCTATGCTGGCCCACCAGGGCGTCCTGGGCGA
GCTGGTTAGCCAGCATTTGCTTCCGTCGAAGAAGGTCAGTGGCCAGGGTG
CTGCCAATCGGATCAGCAAGCAGAGCACCACCGCCAGTGCAGGCGGAAGC
ACCGCAGCAGGCACTGCATCCACGCCCAAGACTCAGCAACAGCAGGCTGC
GGCCGCTAAGAATGGCAAGTCGCCAAGCAAAACGCCAGGCAGGAGGCGAA
AGGGACGCAACAAGTGCAGAAAACGGAAGGCAAGCTTTCTAGACCAT
BO07280.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:44:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
calypso-RA | 1416 | CG8445-PA | 1..1413 | 17..1429 | 7065 | 100 | Plus |
calypso-RB | 1416 | CG8445-PB | 1..1413 | 17..1429 | 7065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:44:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
calypso-RA | 2147 | CG8445-RA | 359..1771 | 17..1429 | 7065 | 100 | Plus |
calypso-RB | 2117 | CG8445-RB | 329..1741 | 17..1429 | 7065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:44:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16194438..16195657 | 1429..210 | 6100 | 100 | Minus |
2R | 25286936 | 2R | 16195715..16195909 | 211..17 | 975 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:44:07 has no hits.
BO07280.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:15 Download gff for
BO07280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8445-RB | 1..1416 | 17..1430 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:24 Download gff for
BO07280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8445-RB | 298..1715 | 17..1435 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:36:39 Download gff for
BO07280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
calypso-RB | 329..1741 | 17..1431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:15 Download gff for
BO07280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8445-RB | 298..1715 | 17..1435 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:08 Download gff for
BO07280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
calypso-RB | 329..1741 | 17..1431 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:08 Download gff for
BO07280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16194436..16195657 | 210..1431 | 99 | <- | Minus |
2R | 16195717..16195909 | 17..209 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:36:39 Download gff for
BO07280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12081941..12083162 | 210..1431 | 99 | <- | Minus |
arm_2R | 12083222..12083414 | 17..209 | 100 | | Minus |
BO07280.pep Sequence
Translation from 16 to 1447
> BO07280.pep
MNAAGGGSGAQAAAVAAGNNSLSHNALLSTASGATTMPMAQLADGWLELE
SDPGLFTLLLKDFGCHDVQVEEVYDLQKPIESPYGFIFLFRWIEERRARR
KIVETTAEIFVKDEEAISSIFFAQQVVPNSCATHALLSVLLNCNENNLQL
GDTLSRLKTHTKGMSPENKGLAIGNTPELACAHNSHAMPQARRRLERTGA
GVSSCRFTGEAFHFVSFVPINGQLFELDGLKPYPMNHGGWEDSEDWTDKF
RRVMAERLGIATGEQDIRFNLMAVVPDRRIAITHKLKMLRTNQAIVSGTL
QKLLKADEQGESGNGDSQRPDTPTTLLEPSAFTARDLQSLLKNLDTEIAI
NEQHLADENDRRHMFKVDASRRTHNYDKFICTFLSMLAHQGVLGELVSQH
LLPSKKVSGQGAANRISKQSTTASAGGSTAAGTASTPKTQQQQAAAAKNG
KSPSKTPGRRRKGRNKCRKRKASFLDH
BO07280.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
calypso-PA | 471 | CG8445-PA | 1..471 | 1..471 | 2429 | 100 | Plus |
calypso-PB | 471 | CG8445-PB | 1..471 | 1..471 | 2429 | 100 | Plus |
Uch-L5-PB | 324 | CG3431-PB | 1..300 | 39..393 | 444 | 31.9 | Plus |
Uch-L5-PA | 324 | CG3431-PA | 1..300 | 39..393 | 444 | 31.9 | Plus |
Uch-L5R-PA | 340 | CG1950-PA | 15..314 | 36..393 | 433 | 30.9 | Plus |