Clone Sequence Records
BO07281.3prime Sequence
593 bp (592 high quality bases) assembled on 2005-12-04
> BO07281.3prime
ATGGTCTAGAAAGCTTGCGGCGGTGGAGGTCTCCACCTTCTTGGCGTTGT
CCTCCTTGGAGGAGGGACCAGTCTGTGTGATCTGCACAAGGCGTTCAGTC
TGCGGAGGAGGCAGCGCCTTCATTGGCGCCTTGATGGTCAGCAGGCCATC
GGAGGAGAGGGACGATGTGACCGTGTCGGGGTTGACATCACTTGGCAGCT
GGTAGCGTCTGGAGAACTGGCGGGAGACATATCCGTGCTCGTCCTGCTTC
TCCTCATGCTTTCCCTCCACGATGACGAACTTGTCGGCCACCTTGACGGT
GATCTCGGATGGCGAGAACTGCTGCACATCCAGAATGACCTCGAACTTCT
CGCTGTCGATGTTGAGGGTGGAACCGGACTCCTGCTTCTGCAGGCTGTTC
GTGTGCCAGGGGCGCAGGTATCCCGATCGCAGCACTGTGGGGCGGGAGTT
CCACACGGAGGACATGAGGTCATCCCTCTTCAGTCCCTGACCGAAGTGCT
GGTCCAAGAGGCGCGAGGTGCGCATTGGAAAGTCGAGCTCATCCCACCAG
TCACGGAACATCAGTGGCACTACGGACATGTCGACTGATAACT
BO07281.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4533-PA | 564 | l(2)efl-RA | 1..561 | 579..19 | 2805 | 100 | Minus |
CG4533-PB | 438 | l(2)efl-RB | 1..392 | 579..188 | 1960 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 22:36:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)efl-RC | 741 | CG4533-RC | 72..632 | 579..19 | 2805 | 100 | Minus |
l(2)efl-RA | 738 | CG4533-RA | 69..629 | 579..19 | 2805 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 22:36:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23684991..23685382 | 188..579 | 1960 | 100 | Plus |
2R | 25286936 | 2R | 23684760..23684932 | 19..191 | 865 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 22:36:18 has no hits.
BO07281.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:14:20 Download gff for
BO07281.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4533-PA | 1..564 | 18..579 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:55:03 Download gff for
BO07281.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4533-PA | 1..564 | 18..579 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:50:59 Download gff for
BO07281.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)efl-RA | 69..629 | 19..579 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 01:01:06 Download gff for
BO07281.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)efl-RA | 69..629 | 19..579 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 01:01:06 Download gff for
BO07281.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23684760..23684932 | 19..191 | 100 | <- | Plus |
2R | 23684995..23685387 | 192..586 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:50:59 Download gff for
BO07281.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19572283..19572455 | 19..191 | 100 | <- | Plus |
arm_2R | 19572518..19572910 | 192..586 | 99 | | Plus |
BO07281.5prime Sequence
593 bp (592 high quality bases) assembled on 2005-12-04
> BO07281.5prime
GAAGTTATCAGTCGACATGTCCGTAGTGCCACTGATGTTCCGTGACTGGT
GGGATGAGCTCGACTTTCCAATGCGCACCTCGCGCCTCTTGGACCAGCAC
TTCGGTCAGGGACTGAAGAGGGATGACCTCATGTCCTCCGTGTGGAACTC
CCGCCCCACAGTGCTGCGATCGGGATACCTGCGCCCCTGGCACACGAACA
GCCTGCAGAAGCAGGAGTCCGGTTCCACCCTCAACATCGACAGCGAGAAG
TTCGAGGTCATTCTGGATGTGCAGCAGTTCTCGCCATCCGAGATCACCGT
CAAGGTGGCCGACAAGTTCGTCATCGTGGAGGGAAAGCATGAGGAGAAGC
AGGACGAGCACGGATATGTCTCCCGCCAGTTCTCCAGACGCTACCAGCTG
CCAAGTGATGTCAACCCCGACACGGTCACATCGTCCCTCTCCTCCGATGG
CCTGCTGACCATCAAGGCGCCAATGAAGGCGCTGCCTCCTCCGCAGACTG
AACGCCTTGTGCAGATCACACAGACTGGTCCCTCCTCCAAGGAGGACAAC
GCCAAGAAGGTGGAGACCTCCACCGCCGCAAGCTTTCTAGACC
BO07281.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4533-PA | 564 | l(2)efl-RA | 1..561 | 17..577 | 2805 | 100 | Plus |
CG4533-PB | 438 | l(2)efl-RB | 1..392 | 17..408 | 1960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:28:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)efl-RC | 741 | CG4533-RC | 72..632 | 17..577 | 2805 | 100 | Plus |
l(2)efl-RA | 738 | CG4533-RA | 69..629 | 17..577 | 2805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:28:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23684991..23685382 | 408..17 | 1960 | 100 | Minus |
2R | 25286936 | 2R | 23684760..23684932 | 577..405 | 865 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:28:22 has no hits.
BO07281.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:14:21 Download gff for
BO07281.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4533-PA | 1..564 | 17..578 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:55:05 Download gff for
BO07281.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4533-PA | 1..564 | 17..578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:02:56 Download gff for
BO07281.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)efl-RA | 69..629 | 17..577 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:00:39 Download gff for
BO07281.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)efl-RA | 69..629 | 17..577 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:00:39 Download gff for
BO07281.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23684760..23684932 | 405..577 | 100 | <- | Minus |
2R | 23684995..23685387 | 10..404 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:02:56 Download gff for
BO07281.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19572283..19572455 | 405..577 | 100 | <- | Minus |
arm_2R | 19572518..19572910 | 10..404 | 99 | | Minus |
BO07281.complete Sequence
595 bp (595 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630733
> BO07281.complete
GAAGTTATCAGTCGACATGTCCGTAGTGCCACTGATGTTCCGTGACTGGT
GGGATGAGCTCGACTTTCCAATGCGCACCTCGCGCCTCTTGGACCAGCAC
TTCGGTCAGGGACTGAAGAGGGATGACCTCATGTCCTCCGTGTGGAACTC
CCGCCCCACAGTGCTGCGATCGGGATACCTGCGCCCCTGGCACACGAACA
GCCTGCAGAAGCAGGAGTCCGGTTCCACCCTCAACATCGACAGCGAGAAG
TTCGAGGTCATTCTGGATGTGCAGCAGTTCTCGCCATCCGAGATCACCGT
CAAGGTGGCCGACAAGTTCGTCATCGTGGAGGGAAAGCATGAGGAGAAGC
AGGACGAGCACGGATATGTCTCCCGCCAGTTCTCCAGACGCTACCAGCTG
CCAAGTGATGTCAACCCCGACACGGTCACATCGTCCCTCTCCTCCGATGG
CCTGCTGACCATCAAGGCGCCAATGAAGGCGCTGCCTCCTCCGCAGACTG
AACGCCTTGTGCAGATCACACAGACTGGTCCCTCCTCCAAGGAGGACAAC
GCCAAGAAGGTGGAGACCTCCACCGCCGCAAGCTTTCTAGACCAT
BO07281.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:20:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)efl-RC | 564 | CG4533-PC | 1..561 | 17..577 | 2805 | 100 | Plus |
l(2)efl-RA | 564 | CG4533-PA | 1..561 | 17..577 | 2805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:20:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)efl-RC | 741 | CG4533-RC | 72..632 | 17..577 | 2805 | 100 | Plus |
l(2)efl-RA | 738 | CG4533-RA | 69..629 | 17..577 | 2805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:20:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23684991..23685382 | 408..17 | 1960 | 100 | Minus |
2R | 25286936 | 2R | 23684760..23684932 | 577..405 | 865 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:20:01 has no hits.
BO07281.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:14 Download gff for
BO07281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)efl-RA | 1..564 | 17..578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:15 Download gff for
BO07281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)efl-RA | 66..626 | 17..577 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:00 Download gff for
BO07281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)efl-RA | 69..629 | 17..579 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:14 Download gff for
BO07281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)efl-RA | 66..626 | 17..577 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:07 Download gff for
BO07281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)efl-RA | 69..629 | 17..579 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:07 Download gff for
BO07281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23684758..23684932 | 405..579 | 98 | <- | Minus |
2R | 23684995..23685382 | 17..404 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:00 Download gff for
BO07281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19572281..19572455 | 405..579 | 98 | <- | Minus |
arm_2R | 19572518..19572905 | 17..404 | 100 | | Minus |
BO07281.pep Sequence
Translation from 16 to 595
> BO07281.pep
MSVVPLMFRDWWDELDFPMRTSRLLDQHFGQGLKRDDLMSSVWNSRPTVL
RSGYLRPWHTNSLQKQESGSTLNIDSEKFEVILDVQQFSPSEITVKVADK
FVIVEGKHEEKQDEHGYVSRQFSRRYQLPSDVNPDTVTSSLSSDGLLTIK
APMKALPPPQTERLVQITQTGPSSKEDNAKKVETSTAASFLDH
BO07281.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:45:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)efl-PC | 187 | CG4533-PC | 1..187 | 1..187 | 970 | 100 | Plus |
l(2)efl-PA | 187 | CG4533-PA | 1..187 | 1..187 | 970 | 100 | Plus |
Hsp27-PB | 213 | CG4466-PB | 1..185 | 1..173 | 312 | 41.4 | Plus |
Hsp27-PA | 213 | CG4466-PA | 1..185 | 1..173 | 312 | 41.4 | Plus |
Hsp23-PB | 186 | CG4463-PB | 60..179 | 68..183 | 275 | 48.3 | Plus |