Clone BO07281 Report

Search the DGRC for BO07281

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:72
Well:81
Vector:pDNR-Dual
Associated Gene/Transcriptl(2)efl-RA
Protein status:BO07281.pep: validated full length
Sequenced Size:595

Clone Sequence Records

BO07281.3prime Sequence

593 bp (592 high quality bases) assembled on 2005-12-04

> BO07281.3prime
ATGGTCTAGAAAGCTTGCGGCGGTGGAGGTCTCCACCTTCTTGGCGTTGT
CCTCCTTGGAGGAGGGACCAGTCTGTGTGATCTGCACAAGGCGTTCAGTC
TGCGGAGGAGGCAGCGCCTTCATTGGCGCCTTGATGGTCAGCAGGCCATC
GGAGGAGAGGGACGATGTGACCGTGTCGGGGTTGACATCACTTGGCAGCT
GGTAGCGTCTGGAGAACTGGCGGGAGACATATCCGTGCTCGTCCTGCTTC
TCCTCATGCTTTCCCTCCACGATGACGAACTTGTCGGCCACCTTGACGGT
GATCTCGGATGGCGAGAACTGCTGCACATCCAGAATGACCTCGAACTTCT
CGCTGTCGATGTTGAGGGTGGAACCGGACTCCTGCTTCTGCAGGCTGTTC
GTGTGCCAGGGGCGCAGGTATCCCGATCGCAGCACTGTGGGGCGGGAGTT
CCACACGGAGGACATGAGGTCATCCCTCTTCAGTCCCTGACCGAAGTGCT
GGTCCAAGAGGCGCGAGGTGCGCATTGGAAAGTCGAGCTCATCCCACCAG
TCACGGAACATCAGTGGCACTACGGACATGTCGACTGATAACT

BO07281.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG4533-PA 564 l(2)efl-RA 1..561 579..19 2805 100 Minus
CG4533-PB 438 l(2)efl-RB 1..392 579..188 1960 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 22:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)efl-RC 741 CG4533-RC 72..632 579..19 2805 100 Minus
l(2)efl-RA 738 CG4533-RA 69..629 579..19 2805 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 22:36:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23684991..23685382 188..579 1960 100 Plus
2R 25286936 2R 23684760..23684932 19..191 865 100 Plus
Blast to na_te.dros performed on 2015-02-04 22:36:18 has no hits.

BO07281.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:14:20 Download gff for BO07281.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4533-PA 1..564 18..579 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:55:03 Download gff for BO07281.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4533-PA 1..564 18..579 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:50:59 Download gff for BO07281.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)efl-RA 69..629 19..579 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 01:01:06 Download gff for BO07281.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)efl-RA 69..629 19..579 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 01:01:06 Download gff for BO07281.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23684760..23684932 19..191 100 <- Plus
2R 23684995..23685387 192..586 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:50:59 Download gff for BO07281.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19572283..19572455 19..191 100 <- Plus
arm_2R 19572518..19572910 192..586 99   Plus

BO07281.5prime Sequence

593 bp (592 high quality bases) assembled on 2005-12-04

> BO07281.5prime
GAAGTTATCAGTCGACATGTCCGTAGTGCCACTGATGTTCCGTGACTGGT
GGGATGAGCTCGACTTTCCAATGCGCACCTCGCGCCTCTTGGACCAGCAC
TTCGGTCAGGGACTGAAGAGGGATGACCTCATGTCCTCCGTGTGGAACTC
CCGCCCCACAGTGCTGCGATCGGGATACCTGCGCCCCTGGCACACGAACA
GCCTGCAGAAGCAGGAGTCCGGTTCCACCCTCAACATCGACAGCGAGAAG
TTCGAGGTCATTCTGGATGTGCAGCAGTTCTCGCCATCCGAGATCACCGT
CAAGGTGGCCGACAAGTTCGTCATCGTGGAGGGAAAGCATGAGGAGAAGC
AGGACGAGCACGGATATGTCTCCCGCCAGTTCTCCAGACGCTACCAGCTG
CCAAGTGATGTCAACCCCGACACGGTCACATCGTCCCTCTCCTCCGATGG
CCTGCTGACCATCAAGGCGCCAATGAAGGCGCTGCCTCCTCCGCAGACTG
AACGCCTTGTGCAGATCACACAGACTGGTCCCTCCTCCAAGGAGGACAAC
GCCAAGAAGGTGGAGACCTCCACCGCCGCAAGCTTTCTAGACC

BO07281.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG4533-PA 564 l(2)efl-RA 1..561 17..577 2805 100 Plus
CG4533-PB 438 l(2)efl-RB 1..392 17..408 1960 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:28:22
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)efl-RC 741 CG4533-RC 72..632 17..577 2805 100 Plus
l(2)efl-RA 738 CG4533-RA 69..629 17..577 2805 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:28:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23684991..23685382 408..17 1960 100 Minus
2R 25286936 2R 23684760..23684932 577..405 865 100 Minus
Blast to na_te.dros performed on 2015-02-13 05:28:22 has no hits.

BO07281.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:14:21 Download gff for BO07281.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4533-PA 1..564 17..578 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:55:05 Download gff for BO07281.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4533-PA 1..564 17..578 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:02:56 Download gff for BO07281.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)efl-RA 69..629 17..577 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:00:39 Download gff for BO07281.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)efl-RA 69..629 17..577 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:00:39 Download gff for BO07281.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23684760..23684932 405..577 100 <- Minus
2R 23684995..23685387 10..404 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:02:56 Download gff for BO07281.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19572283..19572455 405..577 100 <- Minus
arm_2R 19572518..19572910 10..404 99   Minus

BO07281.complete Sequence

595 bp (595 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630733

> BO07281.complete
GAAGTTATCAGTCGACATGTCCGTAGTGCCACTGATGTTCCGTGACTGGT
GGGATGAGCTCGACTTTCCAATGCGCACCTCGCGCCTCTTGGACCAGCAC
TTCGGTCAGGGACTGAAGAGGGATGACCTCATGTCCTCCGTGTGGAACTC
CCGCCCCACAGTGCTGCGATCGGGATACCTGCGCCCCTGGCACACGAACA
GCCTGCAGAAGCAGGAGTCCGGTTCCACCCTCAACATCGACAGCGAGAAG
TTCGAGGTCATTCTGGATGTGCAGCAGTTCTCGCCATCCGAGATCACCGT
CAAGGTGGCCGACAAGTTCGTCATCGTGGAGGGAAAGCATGAGGAGAAGC
AGGACGAGCACGGATATGTCTCCCGCCAGTTCTCCAGACGCTACCAGCTG
CCAAGTGATGTCAACCCCGACACGGTCACATCGTCCCTCTCCTCCGATGG
CCTGCTGACCATCAAGGCGCCAATGAAGGCGCTGCCTCCTCCGCAGACTG
AACGCCTTGTGCAGATCACACAGACTGGTCCCTCCTCCAAGGAGGACAAC
GCCAAGAAGGTGGAGACCTCCACCGCCGCAAGCTTTCTAGACCAT

BO07281.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:20:02
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)efl-RC 564 CG4533-PC 1..561 17..577 2805 100 Plus
l(2)efl-RA 564 CG4533-PA 1..561 17..577 2805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:20:03
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)efl-RC 741 CG4533-RC 72..632 17..577 2805 100 Plus
l(2)efl-RA 738 CG4533-RA 69..629 17..577 2805 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:20:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23684991..23685382 408..17 1960 100 Minus
2R 25286936 2R 23684760..23684932 577..405 865 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:20:01 has no hits.

BO07281.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:14 Download gff for BO07281.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)efl-RA 1..564 17..578 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:15 Download gff for BO07281.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)efl-RA 66..626 17..577 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:00 Download gff for BO07281.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)efl-RA 69..629 17..579 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:14 Download gff for BO07281.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)efl-RA 66..626 17..577 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:07 Download gff for BO07281.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)efl-RA 69..629 17..579 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:07 Download gff for BO07281.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23684758..23684932 405..579 98 <- Minus
2R 23684995..23685382 17..404 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:00 Download gff for BO07281.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19572281..19572455 405..579 98 <- Minus
arm_2R 19572518..19572905 17..404 100   Minus

BO07281.pep Sequence

Translation from 16 to 595

> BO07281.pep
MSVVPLMFRDWWDELDFPMRTSRLLDQHFGQGLKRDDLMSSVWNSRPTVL
RSGYLRPWHTNSLQKQESGSTLNIDSEKFEVILDVQQFSPSEITVKVADK
FVIVEGKHEEKQDEHGYVSRQFSRRYQLPSDVNPDTVTSSLSSDGLLTIK
APMKALPPPQTERLVQITQTGPSSKEDNAKKVETSTAASFLDH

BO07281.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)efl-PC 187 CG4533-PC 1..187 1..187 970 100 Plus
l(2)efl-PA 187 CG4533-PA 1..187 1..187 970 100 Plus
Hsp27-PB 213 CG4466-PB 1..185 1..173 312 41.4 Plus
Hsp27-PA 213 CG4466-PA 1..185 1..173 312 41.4 Plus
Hsp23-PB 186 CG4463-PB 60..179 68..183 275 48.3 Plus