Clone Sequence Records
BO07283.3prime Sequence
859 bp (812 high quality bases) assembled on 2005-12-04
> BO07283.3prime
ATGGTCTAGAAAGCTTGCCATGGACAGAATGGTTTTCCTGATTATGTCGA
TGCTCTCGCGCATTTGGGTCTCATTGATGACCAGTGGAGGAGCGAAGCGA
ATAATGTCGCCATGGGTGGGCTTGGCCAGGAGTCCGTTCTCCTTTAGCCT
GAGGCACACCTCCCAGGCATCGAACTTCTGGTTAATAACGATGGCGTTGA
GCAGACCCTTTCCGCGCACCACCGACACCACATCCTTGGGCAGCGTGGAC
AGCTCGTTGCGCAGCAGGTCACCCATTTTGAAGGCGTTCTCCGCCAGCTT
CTCCTCCTGCAGAACCTCCAAGGCGGCCATGGCCACTCGGCAGCCCAGGG
GGTTGCCTCCGTAGGTGGATCCGTGCTCGCCCGGCTTGATGCACAGCATC
ACCTGGTCGTTGCAGAGAACCGCCGACACGGGATACATTCCTCCGGACAG
TGCTTTTCCCAGGATCAGAATGTCTGGCTGCACCTGCTCGTAGTCCACGG
CCAGCAGCTTTCCAGTTCTGGCCAATCCTGTCTGCACCTCGTCGGCAATC
CAGAGCACATTGTACTTGGTGCAGAGCTCTCGCACCTTCTTCAGATAGCC
ATCACTGGGCACCACCACGCCAGCCTCTCCCTGAATGGGCTCCACCATGA
AGGCGCACACATTCGGATCCTTGAGGGACTCCTCCAGCGCTGACACATTG
TCGTACTCGATCAGCTCGAATCCGGGCATGAAGGGTCCGAATCCCTCGTA
GCTACTGGGATCATTGGAGGCGGACACCGCCGACAGGGTGCGTCCCCAGA
AGTTGTTGCGCGCGAAGATGATCTTTGCCTGGTTGGCAGGTATCTTCTTC
TCCAGGTAG
BO07283.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8782-PA | 1296 | Oat-RA | 453..1293 | 859..19 | 4205 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:57:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oat-RA | 1501 | CG8782-RA | 544..1384 | 859..19 | 4205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:57:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19647611..19648293 | 177..859 | 3415 | 100 | Plus |
| 3L | 28110227 | 3L | 19647397..19647554 | 19..176 | 790 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 09:57:47 has no hits.
BO07283.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:14:22 Download gff for
BO07283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oat-PA | 453..1296 | 18..859 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:55:06 Download gff for
BO07283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8782-PA | 453..1296 | 18..859 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:44:21 Download gff for
BO07283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oat-RA | 544..1391 | 10..859 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:56:44 Download gff for
BO07283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oat-RA | 544..1391 | 10..859 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:56:44 Download gff for
BO07283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19647390..19647554 | 10..176 | 97 | <- | Plus |
| 3L | 19647611..19648293 | 177..859 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:44:21 Download gff for
BO07283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19640490..19640654 | 10..176 | 97 | <- | Plus |
| arm_3L | 19640711..19641393 | 177..859 | 100 | | Plus |
BO07283.5prime Sequence
938 bp (823 high quality bases) assembled on 2005-12-04
> BO07283.5prime
GAAGTTATCAGTCGACATGTTCGCCAAGCTATCAGCCCGCGGGATCGCCA
CCCGCATGAGCTTCTTGGCACAGAAGACAGCTTCCCAGGAGACGACGGCC
GCCGCCGGATCCCGTTCCGAACTCGTCTATGCCAGGGAGAACAAGTACGG
CGCCCACAACTACCACCCACTGCCCGTGGCCCTGACCAAGGGCGAGGGCG
TGTTTGTCTGGGATGTGGAGGGCAAGCGCTACTTCGACTATCTGAGCGCC
TACTCGGCGGTCAACCAGGGTCACTGCCATCCCAAGATCGTAGCGGCACT
CACAGCACAGGCCTCCAAGTTGGCCTTGACATCGCGTGCCTTCTATTCGG
ATGTCCTTGGAGAGTACGAGGAGTACGTGACCAAGCTCTTTGGCTTCGAC
AAGGTGCTGCCCATGAACACGGGCGTTGAGGGCGGAGAAACCGCCTGCAA
GTTGGCCCGCAAGTGGGGCTACCTGGAGAAGAAGATACCTGCCAACCAGG
CAAAGATCATCTTCGCGCGCAACAACTTCTGGGGACGCACCCTGTCGGCG
GTGTCCGCCTCCAATGATCCCAGTAGCTACGAGGGATTCGGACCCTTCAT
GCCCGGATTCGAGCTGATCGAGTACGACAATGTGTCAGCGCTGGAGGAGT
CCCTCAAGGATCCGAATGTGTGCGCCTTCATGGTGGAGCCCATTCAGGGA
GAGGCTGGCGTGGTGGTGCCCAGTGATGGCTATCTGAAGAAGGTGCGAGA
GCTCTGCACCAAGTACAATGTGCTCTGGATTGCCGACGAGGTGCAGACAG
GATTGGCCAGAACTGGAAAGCTGCTGGCCGTGGACTACGAGCAGGTGCAG
CCAGACATTCTGATCCTGGGAAAGCACTGTCGGGAGGAATGTATCCCGTG
TCGGCGGGTCTCTGCAACGACCAGGTGATGCTGTGCAT
BO07283.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8782-PA | 1296 | Oat-RA | 1..857 | 17..873 | 4285 | 100 | Plus |
| CG8782-PA | 1296 | Oat-RA | 856..923 | 871..938 | 290 | 97 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:11:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oat-RA | 1501 | CG8782-RA | 90..1014 | 15..938 | 4570 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:11:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19647823..19648426 | 938..336 | 2940 | 99.5 | Minus |
| 3L | 28110227 | 3L | 19649441..19649762 | 336..15 | 1610 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 05:11:01 has no hits.
BO07283.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:14:23 Download gff for
BO07283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oat-PA | 1..923 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:55:07 Download gff for
BO07283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8782-PA | 1..923 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:21:42 Download gff for
BO07283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oat-RA | 82..1014 | 6..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:37:59 Download gff for
BO07283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oat-RA | 82..1014 | 6..938 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:37:59 Download gff for
BO07283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19649441..19649770 | 6..336 | 99 | | Minus |
| 3L | 19647823..19648425 | 337..938 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:21:42 Download gff for
BO07283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19640923..19641525 | 337..938 | 99 | <- | Minus |
| arm_3L | 19642541..19642870 | 6..336 | 99 | | Minus |
BO07283.complete Sequence
1327 bp (1327 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630734
> BO07283.complete
GAAGTTATCAGTCGACATGTTCGCCAAGCTATCAGCCCGCGGGATCGCCA
CCCGCATGAGCTTCTTGGCACAGAAGACAGCTTCCCAGGAGACGACGGCC
GCCGCCGGATCCCGTTCCGAACTCGTCTATGCCAGGGAGAACAAGTACGG
CGCCCACAACTACCACCCACTGCCCGTGGCCCTGACCAAGGGCGAGGGCG
TGTTTGTCTGGGATGTGGAGGGCAAGCGCTACTTCGACTATCTGAGCGCC
TACTCGGCGGTCAACCAGGGTCACTGCCATCCCAAGATCGTAGCGGCACT
CACAGCACAGGCCTCCAAGTTGGCCTTGACATCGCGTGCCTTCTATTCGG
ATGTCCTTGGAGAGTACGAGGAGTACGTGACCAAGCTCTTTGGCTTCGAC
AAGGTGCTGCCCATGAACACGGGCGTTGAGGGCGGAGAAACCGCCTGCAA
GTTGGCCCGCAAGTGGGGCTACCTGGAGAAGAAGATACCTGCCAACCAGG
CAAAGATCATCTTCGCGCGCAACAACTTCTGGGGACGCACCCTGTCGGCG
GTGTCCGCCTCCAATGATCCCAGTAGCTACGAGGGATTCGGACCCTTCAT
GCCCGGATTCGAGCTGATCGAGTACGACAATGTGTCAGCGCTGGAGGAGT
CCCTCAAGGATCCGAATGTGTGCGCCTTCATGGTGGAGCCCATTCAGGGA
GAGGCTGGCGTGGTGGTGCCCAGTGATGGCTATCTGAAGAAGGTGCGAGA
GCTCTGCACCAAGTACAATGTGCTCTGGATTGCCGACGAGGTGCAGACAG
GATTGGCCAGAACTGGAAAGCTGCTGGCCGTGGACTACGAGCAGGTGCAG
CCAGACATTCTGATCCTGGGAAAAGCACTGTCCGGAGGAATGTATCCCGT
GTCGGCGGTTCTCTGCAACGACCAGGTGATGCTGTGCATCAAGCCGGGCG
AGCACGGATCCACCTACGGAGGCAACCCCCTGGGCTGCCGAGTGGCCATG
GCCGCCTTGGAGGTTCTGCAGGAGGAGAAGCTGGCGGAGAACGCCTTCAA
AATGGGTGACCTGCTGCGCAACGAGCTGTCCACGCTGCCCAAGGATGTGG
TGTCGGTGGTGCGCGGAAAGGGTCTGCTCAACGCCATCGTTATTAACCAG
AAGTTCGATGCCTGGGAGGTGTGCCTCAGGCTAAAGGAGAACGGACTCCT
GGCCAAGCCCACCCATGGCGACATTATTCGCTTCGCTCCTCCACTGGTCA
TCAATGAGACCCAAATGCGCGAGAGCATCGACATAATCAGGAAAACCATT
CTGTCCATGGCAAGCTTTCTAGACCAT
BO07283.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:52:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oat-RA | 1296 | CG8782-PA | 1..1293 | 17..1309 | 6465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:52:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oat-RA | 1501 | CG8782-RA | 90..1384 | 15..1309 | 6475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:52:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19647611..19648426 | 1151..336 | 4080 | 100 | Minus |
| 3L | 28110227 | 3L | 19649441..19649762 | 336..15 | 1610 | 100 | Minus |
| 3L | 28110227 | 3L | 19647397..19647554 | 1309..1152 | 790 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:52:46 has no hits.
BO07283.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:16 Download gff for
BO07283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oat-RA | 1..1296 | 17..1310 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:25 Download gff for
BO07283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oat-RA | 80..1389 | 6..1318 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:39:39 Download gff for
BO07283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oat-RA | 97..1384 | 22..1311 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:16 Download gff for
BO07283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oat-RA | 80..1389 | 6..1318 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:44:53 Download gff for
BO07283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oat-RA | 97..1384 | 22..1311 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:44:53 Download gff for
BO07283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19647395..19647554 | 1152..1311 | 98 | <- | Minus |
| 3L | 19647611..19648425 | 337..1151 | 100 | <- | Minus |
| 3L | 19649441..19649755 | 22..336 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:39:39 Download gff for
BO07283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19640495..19640654 | 1152..1311 | 98 | <- | Minus |
| arm_3L | 19640711..19641525 | 337..1151 | 100 | <- | Minus |
| arm_3L | 19642541..19642855 | 22..336 | 100 | | Minus |
BO07283.pep Sequence
Translation from 16 to 1327
> BO07283.pep
MFAKLSARGIATRMSFLAQKTASQETTAAAGSRSELVYARENKYGAHNYH
PLPVALTKGEGVFVWDVEGKRYFDYLSAYSAVNQGHCHPKIVAALTAQAS
KLALTSRAFYSDVLGEYEEYVTKLFGFDKVLPMNTGVEGGETACKLARKW
GYLEKKIPANQAKIIFARNNFWGRTLSAVSASNDPSSYEGFGPFMPGFEL
IEYDNVSALEESLKDPNVCAFMVEPIQGEAGVVVPSDGYLKKVRELCTKY
NVLWIADEVQTGLARTGKLLAVDYEQVQPDILILGKALSGGMYPVSAVLC
NDQVMLCIKPGEHGSTYGGNPLGCRVAMAALEVLQEEKLAENAFKMGDLL
RNELSTLPKDVVSVVRGKGLLNAIVINQKFDAWEVCLRLKENGLLAKPTH
GDIIRFAPPLVINETQMRESIDIIRKTILSMASFLDH
BO07283.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oat-PA | 431 | CG8782-PA | 1..431 | 1..431 | 2226 | 100 | Plus |
| CG11241-PA | 508 | CG11241-PA | 80..500 | 53..428 | 372 | 28 | Plus |
| CG11241-PC | 518 | CG11241-PC | 80..484 | 53..412 | 355 | 28.4 | Plus |
| CG11241-PB | 518 | CG11241-PB | 80..484 | 53..412 | 355 | 28.4 | Plus |
| CG8745-PA | 494 | CG8745-PA | 37..438 | 49..419 | 297 | 25.6 | Plus |
