Clone Sequence Records
BO07284.3prime Sequence
923 bp (846 high quality bases) assembled on 2005-12-04
> BO07284.3prime
ATGGTCTAGAAAGCTTGCCAGTAACTTTCTGTAGCTTATCTTAAATTGTG
TGAACCCGTAATGACTCAACAGCTGCTCCAAAATGTATCCGTTGGTGGCG
AAGAATACGGCTCCTTGCAGTCCAATCCAGTAGAAGGTGTTCCATGTGTG
GAACTCCAGCAAATAGGCCGGCAGCAACCACAGCGCCTGGGCAAGCAGCC
AGAGGAACAGGAGACCGAAGCACCTTCTCCACGACAGCATCTTGAAGTTG
TTCAAACAGAGCGGCAGAATGGCCAAGTACCAAATGAAGTACTGAGAGGT
TACCACCGAGTTATAGGTGACGATGACAAAGGCCACGGCAAAGATGCAGA
ATGGCAGCGTCTGGCGGAACTGACCGAAGCTCAAGCTTAAGTAGAGGATG
AGCAGGAACTGCGGAGCCAGCACTAGAGTCTTCAGGATCGCAGAAGGTTC
CGCCACACTCGACGCACTGCCCAGGTACTGTAGAAGGAACTGCAGCGAGA
AGTTGTGTCGCGGGTCCTTGCGTACGAAGTGGTACAGGTACGCTTCATAT
ATATATTCCCAACCGTACATTGTGTAGAAGGTCCAAGTGAAGGCCACTAG
GCTGATCAATGTTCCACTTATCAGGCACAGTTGTTGCTTGTTGGGCCGCA
GGATTTGGCACAGGAAGTCGAGGGGAGTTTGTGTCAGCCGCGTTGATAGC
GATAAATAGTATGCCAAACTGAATAGCAACGGATACAGACGGAGGTGTAT
CACTAGACCGTGAGCCAAGCCCGCTCCGAATATAAGCCAGTAACTCCTGG
TGACATTGTGCTCAGATTTTAACAGCAGGTATATAGTTAGTATCACGAAG
AAGCTTGAGAAAGCATCGCCGCTTCCACGTGTGGATATTACAGCCGTCAG
CGGGGTGTATAACCAAAACAAGC
BO07284.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9865-PA | 1401 | CG9865-RA | 556..1398 | 861..19 | 4215 | 100 | Minus |
| CG9865-PB | 1401 | CG9865-RB | 556..1398 | 861..19 | 4215 | 100 | Minus |
| CG9865-PA | 1401 | CG9865-RA | 499..552 | 918..865 | 245 | 98.1 | Minus |
| CG9865-PB | 1401 | CG9865-RB | 499..552 | 918..865 | 245 | 98.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:12:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42381-RA | 2259 | CG42381-RA | 1304..2209 | 923..19 | 4445 | 99.6 | Minus |
| CG42380-RB | 2320 | CG42380-RB | 1365..2270 | 923..19 | 4445 | 99.6 | Minus |
| CG42380-RA | 2259 | CG42380-RA | 1304..2209 | 923..19 | 4445 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:12:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21667591..21668490 | 19..918 | 4440 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:12:32 has no hits.
BO07284.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:14:24 Download gff for
BO07284.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9865-PA | 493..1401 | 15..923 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:55:09 Download gff for
BO07284.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9865-PB | 493..1401 | 15..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:42:48 Download gff for
BO07284.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42380-RA | 1304..2212 | 15..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:06:47 Download gff for
BO07284.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42380-RA | 1304..2212 | 15..923 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:06:47 Download gff for
BO07284.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21667588..21668496 | 15..923 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:42:48 Download gff for
BO07284.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17555093..17556001 | 15..923 | 99 | | Plus |
BO07284.5prime Sequence
920 bp (870 high quality bases) assembled on 2005-12-04
> BO07284.5prime
GAAGTTATCAGTCGACATGACTCAAACAAAGGCTGCGACCACTGGATGGC
AGCGACTGGGTCGCCGCATCCTTTACACTAGCTTTCGGACCCATCTACTA
ATATCCGCCCTGCTGCGAATAGCTTTAATTTGCTACGGACAATTACACGA
CAGTCAGTCCGCCGTGCCCTACACCGATATAGACTACAAGGTGGTGACTG
ATGGAGCCCGTCAAGTTCTGGCTGGGGACACACCCTTCGCCAGGCATACT
TACCGATATAGCCCAATCATGGCATATCTGCAGACTTTTAACATCCTGCT
TCATCCGGCGTGGGGTAAACTACTGTATGCGACATTCGATCTTCTCATCG
CCACACTTATTTACCGTCTGGTGCACATGGAAATCAAGAGTCAGTACCAG
AAGACCGTACAACACCTGCTTAGCAAGTTCAACAGGCCACGGGACTCGGA
CCAATCGCTGGATGCCCTGGATGAGCGAAGTCATCCAGAGAACTTGGCCC
GCGCCTCTGCTTGCTTTTGGTTATACAACCCGCTGACGGCTGTAATATCC
ACACGTGGAAGCGGCGATTGCTTCTCAAGCTTCTTCGTGATACTAACTAT
ATACCTGCTGTTAAAATCTGAGCACAATGTCACCAGGAGTTACTGGCTTA
TATTCGGAGCGGGCTTGGCTCACGGTCTAGTGATACACCTCCGTCTGTAT
CCGTTGCTATTCAGTTTGGCATACTATTTATCGCTATCAACGCGGCTGAC
ACAAACTCCCCTCGACTTCCTGTGCCAAATCCTGCGGCCCAACAAGCAAC
AACTGTGCCTGATAAGTGGAACATTGATCAGCCTAGTGGCCTTCACTTGG
ACCTTCTACACAATGTACGGTTGGGAATATATATATGAAGCGTACCTGTA
CCACTTCGTACGCAGGGACC
BO07284.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9865-PA | 1401 | CG9865-RA | 1..904 | 17..920 | 4495 | 99.8 | Plus |
| CG9865-PB | 1401 | CG9865-RB | 1..904 | 17..920 | 4495 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:39:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42381-RA | 2259 | CG42381-RA | 812..1715 | 17..920 | 4505 | 99.9 | Plus |
| CG42380-RB | 2320 | CG42380-RB | 873..1776 | 17..920 | 4505 | 99.9 | Plus |
| CG42380-RA | 2259 | CG42380-RA | 812..1715 | 17..920 | 4505 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:39:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21668085..21668988 | 920..17 | 4505 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:39:42 has no hits.
BO07284.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:14:25 Download gff for
BO07284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9865-PA | 1..904 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:55:10 Download gff for
BO07284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9865-PB | 1..904 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:31:54 Download gff for
BO07284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42380-RA | 808..1715 | 9..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:20:46 Download gff for
BO07284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42380-RA | 808..1715 | 9..920 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:20:46 Download gff for
BO07284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21668085..21668992 | 9..920 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:31:54 Download gff for
BO07284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17555590..17556497 | 9..920 | 99 | | Minus |
BO07284.complete Sequence
1432 bp (1432 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630735
> BO07284.complete
GAAGTTATCAGTCGACATGACTCAAACAAAGGCTGCGACCACTGGATGGC
AGCGACTGGGTCGCCGCATCCTTTACACTAGCTTTCGGACCCATCTACTA
ATATCCGCCCTGCTGCGAATAGCTTTAATTTGCTACGGACAATTACACGA
CAGTCAGTCCGCCGTGCCCTACACCGATATAGACTACAAGGTGGTGACTG
ATGGAGCCCGTCAAGTTCTGGCTGGGGACACACCCTTCGCCAGGCATACT
TACCGATATAGCCCAATCATGGCATATCTGCAGACTTTTAACATCCTGCT
TCATCCGGCGTGGGGTAAACTACTGTATGCGACATTCGATCTTCTCATCG
CCACACTTATTTACCGTCTGGTGCACATGGAAATCAAGAGTCAGTACCAG
AAGACCGTACAACACCTGCTTAGCAAGTTCAACAGGCCACGGGACTCGGA
CCAATCGCTGGATGCCCTGGATGAGCGAAGTCATCCAGAGAACTTGGCCC
GCGCCTCTGCTTGCTTTTGGTTATACAACCCGCTGACGGCTGTAATATCC
ACACGTGGAAGCGGCGATTGCTTCTCAAGCTTCTTCGTGATACTAACTAT
ATACCTGCTGTTAAAATCTGAGCACAATGTCACCAGGAGTTACTGGCTTA
TATTCGGAGCGGGCTTGGCTCACGGTCTAGTGATACACCTCCGTCTGTAT
CCGTTGCTATTCAGTTTGGCATACTATTTATCGCTATCAACGCGGCTGAC
ACAAACTCCCCTCGACTTCCTGTGCCAAATCCTGCGGCCCAACAAGCAAC
AACTGTGCCTGATAAGTGGAACATTGATCAGCCTAGTGGCCTTCACTTGG
ACCTTCTACACAATGTACGGTTGGGAATATATATATGAAGCGTACCTGTA
CCACTTCGTACGCAAGGACCCGCGACACAACTTCTCGCTGCAGTTCCTTC
TACAGTACCTGGGCAGTGCGTCGAGTGTGGCGGAACCTTCTGCGATCCTG
AAGACTCTAGTGCTGGCTCCGCAGTTCCTGCTCATCCTCTACTTAAGCTT
GAGCTTCGGTCAGTTCCGCCAGACGCTGCCATTCTGCATCTTTGCCGTGG
CCTTTGTCATCGTCACCTATAACTCGGTGGTAACCTCTCAGTACTTCATT
TGGTACTTGGCCATTCTGCCGCTCTGTTTGAACAACTTCAAGATGCTGTC
GTGGAGAAGGTGCTTCGGTCTCCTGTTCCTCTGGCTGCTTGCCCAGGCGC
TGTGGTTGCTGCCGGCCTATTTGCTGGAGTTCCACACATGGAACACCTTC
TACTGGATTGGACTGCAAGGAGCCGTATTCTTCGCCACCAACGGATACAT
TTTGGAGCAGCTGTTGAGTCATTACGGGTTCACACAATTTAAGATAAGCT
ACAGAAAGTTACTGGCAAGCTTTCTAGACCAT
BO07284.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:56:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9865-RB | 1401 | CG9865-PB | 1..1398 | 17..1414 | 6990 | 100 | Plus |
| CG9865-RA | 1401 | CG9865-PA | 1..1398 | 17..1414 | 6990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:56:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42381-RA | 2259 | CG42381-RA | 812..2209 | 17..1414 | 6990 | 100 | Plus |
| CG42380-RB | 2320 | CG42380-RB | 873..2270 | 17..1414 | 6990 | 100 | Plus |
| CG42380-RA | 2259 | CG42380-RA | 812..2209 | 17..1414 | 6990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:56:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21667591..21668988 | 1414..17 | 6990 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:56:51 has no hits.
BO07284.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:17 Download gff for
BO07284.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9865-RB | 1..1401 | 17..1418 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:27 Download gff for
BO07284.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42379-RA | 947..2351 | 9..1418 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:01 Download gff for
BO07284.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42380-RA | 812..2209 | 17..1416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:17 Download gff for
BO07284.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9865-RB | 868..2272 | 9..1418 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:45 Download gff for
BO07284.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42380-RA | 812..2209 | 17..1416 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:45 Download gff for
BO07284.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21667589..21668988 | 17..1416 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:01 Download gff for
BO07284.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17555094..17556493 | 17..1416 | 99 | | Minus |
BO07284.pep Sequence
Translation from 16 to 1432
> BO07284.pep
MTQTKAATTGWQRLGRRILYTSFRTHLLISALLRIALICYGQLHDSQSAV
PYTDIDYKVVTDGARQVLAGDTPFARHTYRYSPIMAYLQTFNILLHPAWG
KLLYATFDLLIATLIYRLVHMEIKSQYQKTVQHLLSKFNRPRDSDQSLDA
LDERSHPENLARASACFWLYNPLTAVISTRGSGDCFSSFFVILTIYLLLK
SEHNVTRSYWLIFGAGLAHGLVIHLRLYPLLFSLAYYLSLSTRLTQTPLD
FLCQILRPNKQQLCLISGTLISLVAFTWTFYTMYGWEYIYEAYLYHFVRK
DPRHNFSLQFLLQYLGSASSVAEPSAILKTLVLAPQFLLILYLSLSFGQF
RQTLPFCIFAVAFVIVTYNSVVTSQYFIWYLAILPLCLNNFKMLSWRRCF
GLLFLWLLAQALWLLPAYLLEFHTWNTFYWIGLQGAVFFATNGYILEQLL
SHYGFTQFKISYRKLLASFLDH
BO07284.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9865-PB | 466 | CG9865-PB | 1..466 | 1..466 | 2452 | 100 | Plus |
| CG9865-PA | 466 | CG9865-PA | 1..466 | 1..466 | 2452 | 100 | Plus |
