Clone Sequence Records
BO07285.3prime Sequence
849 bp (848 high quality bases) assembled on 2005-12-04
> BO07285.3prime
ATGGTCTAGAAAGCTTGCGTCGATCTTCACAGCTCCGTAGATTCTTAGAA
TGAAAACGTAGGCGGCGAAGAAGCCAATCGAGCCAGTTAGCAGCCAAAAT
GTGAGCACCATAAGACCCGTATAGCCCAGGTAGAGCAGCGTCGGTATGAA
CTCTGTGATCTCCAGCTTTGTGAAAAAGTAGAAGATGCTATAAAAAAGTA
CATAAACAGCCGAGCCGCCAGACACAACAAAACTGCGCCACCACCAGCGG
TAGTCCTCACCGCAGAGCTGGAAATAAGTCATTACTATAGAGATCTGGGC
ACAGCTTACGACTAAGATGCAAAACACCAAGAATAGAAAGCCAAACAGGT
AGTAGAACTGATTCTGCCAGATGGCCGTGAACACAAAGAAGAGTTCAATG
AAGACGGCGCCAAAGGGCAAGATGCCCGCCATCAGAGTGCTTAAAACCGC
ATTCATGTACCAGTGCTGTGTGGGCACTTGTCGCGGAATCATATTGGTTC
GCACTGGATGCTGGTAGGGTTGCTTGCGGTATCCCAAATAAAAGCCCAGG
TAGACCAGGGGCACAGAGATGCCAAACCATAGCAGCAGCAGTGAGATCAT
GGTGGTAAAGGGAACGGCACCGCTAGACGACTTGTCCCAAATAAAAAAGT
TCAAGAAGAATCCAGTGCCAAAGACAATGCCTGGATACAGAGTAGCGGTG
AGAAAGGCGGCCCGCTTCCACTCGCGACCCTTCATTGTTTTGTAGAGACG
GGCAGCATAGTATCCTGCAATAGTGCCCATGAAAACGTACATAAAAATGC
CCGAGGTCATGAGCGCGCCACGCGACGATGGCGACAGCATGCCCAACAT
BO07285.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7364-PA | 1893 | CG7364-RA | 1060..1890 | 849..19 | 4155 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:11:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TM9SF4-RB | 2669 | CG7364-RB | 1414..2244 | 849..19 | 4155 | 100 | Minus |
| TM9SF4-RA | 2461 | CG7364-RA | 1206..2036 | 849..19 | 4155 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:11:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13772640..13772868 | 668..440 | 1145 | 100 | Minus |
| 2L | 23513712 | 2L | 13772931..13773117 | 441..255 | 935 | 100 | Minus |
| 2L | 23513712 | 2L | 13772390..13772571 | 849..668 | 910 | 100 | Minus |
| 2L | 23513712 | 2L | 13773182..13773324 | 257..115 | 715 | 100 | Minus |
| 2L | 23513712 | 2L | 13773382..13773480 | 117..19 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 05:11:09 has no hits.
BO07285.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:14:26 Download gff for
BO07285.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7364-PA | 1060..1893 | 15..849 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:55:11 Download gff for
BO07285.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7364-PA | 1060..1893 | 15..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:21:44 Download gff for
BO07285.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TM9SF4-RA | 1206..2042 | 12..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:38:09 Download gff for
BO07285.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TM9SF4-RA | 1206..2042 | 12..849 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:38:09 Download gff for
BO07285.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13772390..13772571 | 668..849 | 100 | -> | Minus |
| 2L | 13772641..13772868 | 440..667 | 100 | -> | Minus |
| 2L | 13772933..13773116 | 256..439 | 100 | -> | Minus |
| 2L | 13773184..13773322 | 117..255 | 100 | -> | Minus |
| 2L | 13773383..13773486 | 14..116 | 96 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:21:44 Download gff for
BO07285.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13772641..13772868 | 440..667 | 100 | -> | Minus |
| arm_2L | 13772390..13772571 | 668..849 | 100 | -> | Minus |
| arm_2L | 13772933..13773116 | 256..439 | 100 | -> | Minus |
| arm_2L | 13773184..13773322 | 117..255 | 100 | -> | Minus |
| arm_2L | 13773383..13773486 | 14..116 | 96 | -> | Minus |
BO07285.5prime Sequence
935 bp (841 high quality bases) assembled on 2005-12-04
> BO07285.5prime
GAAGTTATCAGTCGACATGCAGTCCGGGGCTCTGGCTAGGCCATGTCTGG
CGATAGTCCTGCTGGCGGGCGTCGTCCTGGTGGCCGACTCCTTCTACGTG
CCCGGCGTGGCGCCGGTGGAGTTCGTACAAGACCAAAAGATCGACGTGAA
AGCCGTGAAGATGACTAGCAGCCGCACCCAGCTGCCATATCAGTACTACT
CTCTTAGGTTCTGCTATCCCAAGAATGGCACGCTCATCTTTAAGTCAGAG
AATTTGGGTGAAGTTCTGCGCGGCGACCGAATCGTCAATACGCCTTACGA
GGTGCGGATGAACCAGCAGGTCAACTGCCGGCTGTTGTGCAACCAGAAGG
ACAGACCGCTCACTTGGAGTAAAGAGGACTCCGCACTGGTTGCGGAGCGC
ATCCAGCACGAGTACTTTGTGCATCTGCTCGTGGACAATCTGCCGGTGGC
CACGCGCATCGTCAGCGTTAACAATCCCGCGGAGGTGACCTACGAGCACG
GGTATCGTCTAGGCCAAGTGGACGGGGACAACATCTACATCAATAACCAC
CTGAAGTTTATCCTATCCTACCACATGCACTCCAAGGATAAGTATCGTGT
GGTTGGCTTTGAGGTGGAAACCGTTTCGGTCAGTCACAAAGAGCTGAAAT
TCCATGGGGACACCTGCAACTTCCCAGACAGCGCCCGACCGCAGCTGGTC
AATCCGAACGGAGAGACGCAGCTATATTTCACGTACTCTGTGGAGTGGAA
GGAGTCCAAGGTGAGCTGGGCCTCACGATGGGACATCTACCTTGGCATGC
GCGATGTCCAGATCCATTGGTTCAGCATCATCAACTCGCTAGTGGTGGTC
TTCTTCCTGTCTGGCATTCTCACTATGATTATGATTCGCACCCTGCGTCG
AGACATTGCCCGCTACAATACGGATGACAATATTG
BO07285.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7364-PA | 1893 | CG7364-RA | 1..919 | 17..935 | 4595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:31:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TM9SF4-RB | 2669 | CG7364-RB | 355..1273 | 17..935 | 4595 | 100 | Plus |
| TM9SF4-RA | 2461 | CG7364-RA | 147..1065 | 17..935 | 4595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:31:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13771334..13772249 | 20..935 | 4580 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 19:31:49 has no hits.
BO07285.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:14:27 Download gff for
BO07285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7364-PA | 1..919 | 17..935 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:55:12 Download gff for
BO07285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7364-PA | 1..919 | 17..935 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:08:42 Download gff for
BO07285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TM9SF4-RA | 139..1065 | 9..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:19:58 Download gff for
BO07285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TM9SF4-RA | 139..1065 | 9..935 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:19:58 Download gff for
BO07285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13771327..13772249 | 12..935 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:08:42 Download gff for
BO07285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13771327..13772249 | 12..935 | 99 | | Plus |
BO07285.complete Sequence
1924 bp assembled on 2008-08-14
GenBank Submission: FJ630736
> BO07285.complete
GAAGTTATCAGTCGACATGCAGTCCGGGGCTCTGGCTAGGCCATGTCTGG
CGATAGTCCTGCTGGCGGGCGTCGTCCTGGTGGCCGACTCCTTCTACGTG
CCCGGCGTGGCGCCGGTGGAGTTCGTACAAGACCAAAAGATCGACGTGAA
AGCCGTGAAGATGACTAGCAGCCGCACCCAGCTGCCATATCAGTACTACT
CTCTTAGGTTCTGCTATCCCAAGAATGGCACGCTCATCTTTAAGTCAGAG
AATTTGGGTGAAGTTCTGCGCGGCGACCGAATCGTCAATACGCCTTACGA
GGTGCGGATGAACCAGCAGGTCAACTGCCGGCTGTTGTGCAACCAGAAGG
ACAGACCGCTCACTTGGAGTAAAGAGGACTCCGCACTGGTTGCGGAGCGC
ATCCAGCACGAGTACTTTGTGCATCTGCTCGTGGACAATCTGCCGGTGGC
CACGCGCATCGTCAGCGTTAACAATCCCGCGGAGGTGACCTACGAGCACG
GGTATCGTCTAGGCCAAGTGGACGGGGACAACATCTACATCAATAACCAC
CTGAAGTTTATCCTATCCTACCACATGCACTCCAAGGATAAGTATCGTGT
GGTTGGCTTTGAGGTGGAAACCGTTTCGGTCAGTCACAAAGAGCTGAAAT
TCCATGGGGACACCTGCAACTTCCCAGACAGCGCCCGACCGCAGCTGGTC
AATCCGAACGGAGAGACGCAGCTATATTTCACGTACTCTGTGGAGTGGAA
GGAGTCCAAGGTGAGCTGGGCCTCACGATGGGACATCTACCTTGGCATGC
GCGATGTCCAGATCCATTGGTTCAGCATCATCAACTCGCTAGTGGTGGTC
TTCTTCCTGTCTGGCATTCTCACTATGATTATGATTCGCACCCTGCGTCG
AGACATTGCCCGCTACAATACGGATGACAATATTGAAGATACATTGGAGG
AGACCGGTTGGAAGCTTGTGCATGGAGACGTATTCCGTCCGCCCAAGAAT
ACTAGGCTGTTTTCCGCGATTATCGGCAGTGGCATTCAGATCTTCTTTAT
GGCCCTCATCACCATCTTCTTTGCCATGTTGGGCATGCTGTCGCCATCGT
CGCGTGGCGCGCTCATGACCTCGGGCATTTTTATGTACGTTTTCATGGGC
ACTATTGCAGGATACTATGCTGCCCGTCTCTACAAAACAATGAAGGGTCG
CGAGTGGAAGCGGGCCGCCTTTCTCACCGCTACTCTGTATCCAGGCATTG
TCTTTGGCACTGGATTCTTCTTGAACTTTTTTATTTGGGACAAGTCGTCT
AGCGGTGCCGTTCCCTTTACCACCATGATCTCACTGCTGCTGCTATGGTT
TGGCATCTCTGTGCCCCTGGTCTACCTGGGCTTTTATTTGGGATACCGCA
AGCAACCCTACCAGCATCCAGTGCGAACCAATATGATTCCGCGACAAGTG
CCCACACAGCACTGGTACATGAATGCGGTTTTAAGCACTCTGATGGCGGG
CATCTTGCCCTTTGGCGCCGTCTTCATTGAACTCTTCTTTGTGTTCACGG
CCATCTGGCAGAATCAGTTCTACTACCTGTTTGGCTTTCTATTCTTGGTG
TTTTGCATCTTAGTCGTAAGCTGTGCCCAGATCTCTATAGTAATGACTTA
TTTCCAGCTCTGCGGTGAGGACTACCGCTGGTGGTGGCGCAGTTTTGTTG
TGTCTGGCGGCTCGGCTGTTTATGTACTTTTTTATAGCATCTTCTACTTT
TTCACAAAGCTGGAGATCACAGAGTTCATACCGACGCTGCTCTACCTGGG
CTATACGGGTCTTATGGTGCTCACATTTTGGCTGCTAACTGGCTCGATTG
GCTTCTTCGCCGCCTACGTTTTCATTCTAAGAATCTACGGAGCTGTGAAG
ATCGACGCAAGCTTTCTAGACCAT
BO07285.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:37:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TM9SF4-RB | 1893 | CG7364-PB | 1..1890 | 17..1906 | 9450 | 100 | Plus |
| TM9SF4-RA | 1893 | CG7364-PA | 1..1890 | 17..1906 | 9450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:37:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TM9SF4-RB | 2669 | CG7364-RB | 355..2244 | 17..1906 | 9450 | 100 | Plus |
| TM9SF4-RA | 2461 | CG7364-RA | 147..2036 | 17..1906 | 9450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:37:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13771334..13772571 | 20..1257 | 6190 | 100 | Plus |
| 2L | 23513712 | 2L | 13772640..13772868 | 1257..1485 | 1145 | 100 | Plus |
| 2L | 23513712 | 2L | 13772931..13773117 | 1484..1670 | 935 | 100 | Plus |
| 2L | 23513712 | 2L | 13773182..13773324 | 1668..1810 | 715 | 100 | Plus |
| 2L | 23513712 | 2L | 13773382..13773480 | 1808..1906 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:37:56 has no hits.
BO07285.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:37:12 Download gff for
BO07285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7364-RA | 147..2050 | 9..1913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:55 Download gff for
BO07285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TM9SF4-RA | 147..2036 | 17..1908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:46 Download gff for
BO07285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7364-RA | 155..2044 | 17..1908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:31 Download gff for
BO07285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TM9SF4-RA | 147..2036 | 17..1908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:31 Download gff for
BO07285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13773184..13773322 | 1670..1808 | 100 | -> | Plus |
| 2L | 13773383..13773480 | 1809..1908 | 98 | | Plus |
| 2L | 13771331..13772571 | 17..1257 | 99 | -> | Plus |
| 2L | 13772641..13772868 | 1258..1485 | 100 | -> | Plus |
| 2L | 13772933..13773116 | 1486..1669 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:55 Download gff for
BO07285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13771331..13772571 | 17..1257 | 99 | -> | Plus |
| arm_2L | 13772641..13772868 | 1258..1485 | 100 | -> | Plus |
| arm_2L | 13772933..13773116 | 1486..1669 | 100 | -> | Plus |
| arm_2L | 13773184..13773322 | 1670..1808 | 100 | -> | Plus |
| arm_2L | 13773383..13773480 | 1809..1908 | 98 | | Plus |
BO07285.pep Sequence
Translation from 16 to 1924
> BO07285.pep
MQSGALARPCLAIVLLAGVVLVADSFYVPGVAPVEFVQDQKIDVKAVKMT
SSRTQLPYQYYSLRFCYPKNGTLIFKSENLGEVLRGDRIVNTPYEVRMNQ
QVNCRLLCNQKDRPLTWSKEDSALVAERIQHEYFVHLLVDNLPVATRIVS
VNNPAEVTYEHGYRLGQVDGDNIYINNHLKFILSYHMHSKDKYRVVGFEV
ETVSVSHKELKFHGDTCNFPDSARPQLVNPNGETQLYFTYSVEWKESKVS
WASRWDIYLGMRDVQIHWFSIINSLVVVFFLSGILTMIMIRTLRRDIARY
NTDDNIEDTLEETGWKLVHGDVFRPPKNTRLFSAIIGSGIQIFFMALITI
FFAMLGMLSPSSRGALMTSGIFMYVFMGTIAGYYAARLYKTMKGREWKRA
AFLTATLYPGIVFGTGFFLNFFIWDKSSSGAVPFTTMISLLLLWFGISVP
LVYLGFYLGYRKQPYQHPVRTNMIPRQVPTQHWYMNAVLSTLMAGILPFG
AVFIELFFVFTAIWQNQFYYLFGFLFLVFCILVVSCAQISIVMTYFQLCG
EDYRWWWRSFVVSGGSAVYVLFYSIFYFFTKLEITEFIPTLLYLGYTGLM
VLTFWLLTGSIGFFAAYVFILRIYGAVKIDASFLDH
BO07285.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TM9SF4-PB | 630 | CG7364-PB | 1..630 | 1..630 | 3328 | 100 | Plus |
| TM9SF4-PA | 630 | CG7364-PA | 1..630 | 1..630 | 3328 | 100 | Plus |
| CG9318-PB | 659 | CG9318-PB | 9..659 | 9..630 | 1356 | 41.8 | Plus |
| CG9318-PA | 659 | CG9318-PA | 9..659 | 9..630 | 1356 | 41.8 | Plus |
| CG10590-PA | 592 | CG10590-PA | 58..592 | 55..630 | 925 | 35.1 | Plus |
