Clone BO07289 Report

Search the DGRC for BO07289

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:72
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptVhaPPA1-1-RA
Protein status:BO07289.pep:
Sequenced Size:670

Clone Sequence Records

BO07289.3prime Sequence

668 bp (667 high quality bases) assembled on 2005-12-04

> BO07289.3prime
ATGGTCTAGAAAGCTTGCCTCCTTGTCGCCCATCTTGGACTTGGAGGTCA
TGTAGATGCCCACGATGAGGCCGAACAGACCGATGGCCGAACCGAAGATC
TCCACAATAAGGATCTTGACGAACAGGGCGGCATTGGCGGCGTCCGAGAG
GGCGGCACCCGAACCCACAATGCCCACAGCAATGCCGCAGAACAGATTGA
CCAGGCCGACAGCCAGGCCAGCACCGAAGATGAGGTAGCCGGAGAACCAG
TTCGTGTTCTGAATAGCCGCCTGCGAAAGGGCCGTCTCCATCGAGAACTG
CTCCAGCTGGCCGGACAGAACGATGGCGGTGATCAGGCCGTAGATGGCCA
CGGCCTCGCAGAAGATGACCGAGATCAGATTCTTGGTCTTGATGCGGGGC
GCCTTCACACCACCGCCCACGATGCTCGTGCCCGTCGTATGGATGCCCAG
GGCGGCGCCCACGACGGACAGCGAGACGGAGAGTCCGATGCCCAGGCAGG
CCCACATGTACGGGTTTGAGGAGGCCAGGAACCAGCCCACGCTCACCCGC
TCGCCCTTGCCCGTCATCACGAAGTACAGGGTCAGGATGGTGGCCACGGC
GAGGAAGAGCCACAGGAACGTTTGGGACACCACGGTGCGTATTTGGGCCG
CCATGTCGACTGATAACT

BO07289.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG7007-PA 639 VhaPPA1-1-RA 1..636 654..19 3180 100 Minus
CG7026-PA 606 CG7026-RA 232..318 396..310 235 90.8 Minus
CG7026-PA 606 CG7026-RA 505..588 123..40 170 88 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
VhaPPA1-1-RB 1348 CG7007-RB 127..762 654..19 3180 100 Minus
VhaPPA1-1-RA 1352 CG7007-RA 131..766 654..19 3180 100 Minus
VhaPPA1-2-RB 672 CG7026-RB 471..621 190..40 395 84.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:21:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14903237..14903872 19..654 3180 100 Plus
3R 32079331 3R 14899657..14899807 40..190 395 84.1 Plus
3R 32079331 3R 14899927..14900154 310..537 345 76.8 Plus
Blast to na_te.dros performed on 2015-02-04 20:21:27 has no hits.

BO07289.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:14:32 Download gff for BO07289.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7007-PA 1..639 18..654 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:55:18 Download gff for BO07289.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7007-PA 1..639 18..654 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:24:48 Download gff for BO07289.3prime
Subject Subject Range Query Range Percent Splice Strand
VhaPPA1-1-RA 136..784 13..664 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:48:48 Download gff for BO07289.3prime
Subject Subject Range Query Range Percent Splice Strand
VhaPPA1-1-RA 123..771 13..664 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:48:48 Download gff for BO07289.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 14903232..14903880 13..664 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:24:48 Download gff for BO07289.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10728954..10729602 13..664 98   Plus

BO07289.5prime Sequence

668 bp (667 high quality bases) assembled on 2005-12-04

> BO07289.5prime
GAAGTTATCAGTCGACATGGCGGCCCAAATACGCACCGTGGTGTCCCAAA
CGTTCCTGTGGCTCTTCCTCGCCGTGGCCACCATCCTGACCCTGTACTTC
GTGATGACGGGCAAGGGCGAGCGGGTGAGCGTGGGCTGGTTCCTGGCCTC
CTCAAACCCGTACATGTGGGCCTGCCTGGGCATCGGACTCTCCGTCTCGC
TGTCCGTCGTGGGCGCCGCCCTGGGCATCCATACGACGGGCACGAGCATC
GTGGGCGGTGGTGTGAAGGCGCCCCGCATCAAGACCAAGAATCTGATCTC
GGTCATCTTCTGCGAGGCCGTGGCCATCTACGGCCTGATCACCGCCATCG
TTCTGTCCGGCCAGCTGGAGCAGTTCTCGATGGAGACGGCCCTTTCGCAG
GCGGCTATTCAGAACACGAACTGGTTCTCCGGCTACCTCATCTTCGGTGC
TGGCCTGGCTGTCGGCCTGGTCAATCTGTTCTGCGGCATTGCTGTGGGCA
TTGTGGGTTCGGGTGCCGCCCTCTCGGACGCCGCCAATGCCGCCCTGTTC
GTCAAGATCCTTATTGTGGAGATCTTCGGTTCGGCCATCGGTCTGTTCGG
CCTCATCGTGGGCATCTACATGACCTCCAAGTCCAAGATGGGCGACAAGG
AGGCAAGCTTTCTAGACC

BO07289.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG7007-PA 639 VhaPPA1-1-RA 1..636 17..652 3180 100 Plus
CG7026-PA 606 CG7026-RA 232..318 275..361 235 90.8 Plus
CG7026-PA 606 CG7026-RA 505..588 548..631 170 88 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
VhaPPA1-1-RB 1348 CG7007-RB 127..762 17..652 3180 100 Plus
VhaPPA1-1-RA 1352 CG7007-RA 131..766 17..652 3180 100 Plus
VhaPPA1-2-RB 672 CG7026-RB 471..621 481..631 395 84.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:31:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14903237..14903872 652..17 3180 100 Minus
3R 32079331 3R 14899657..14899807 631..481 395 84.1 Minus
3R 32079331 3R 14899927..14900154 361..134 345 76.8 Minus
Blast to na_te.dros performed on 2015-02-09 19:32:02 has no hits.

BO07289.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:14:34 Download gff for BO07289.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7007-PA 1..639 17..653 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:55:20 Download gff for BO07289.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7007-PA 1..639 17..653 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:08:44 Download gff for BO07289.5prime
Subject Subject Range Query Range Percent Splice Strand
VhaPPA1-1-RA 136..784 7..658 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:20:00 Download gff for BO07289.5prime
Subject Subject Range Query Range Percent Splice Strand
VhaPPA1-1-RA 123..771 7..658 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:20:00 Download gff for BO07289.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14903232..14903880 7..658 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:08:44 Download gff for BO07289.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10728954..10729602 7..658 98   Minus

BO07289.complete Sequence

670 bp assembled on 2006-12-18

GenBank Submission: FJ630737

> BO07289.complete
GAAGTTATCAGTCGACATGGCGGCCCAAATACGCACCGTGGTGTCCCAAA
CGTTCCTGTGGCTCTTCCTCGCCGTGGCCACCATCCTGACCCTGTACTTC
GTGATGACGGGCAAGGGCGAGCGGGTGAGCGTGGGCTGGTTCCTGGCCTC
CTCAAACCCGTACATGTGGGCCTGCCTGGGCATCGGACTCTCCGTCTCGC
TGTCCGTCGTGGGCGCCGCCCTGGGCATCCATACGACGGGCACGAGCATC
GTGGGCGGTGGTGTGAAGGCGCCCCGCATCAAGACCAAGAATCTGATCTC
GGTCATCTTCTGCGAGGCCGTGGCCATCTACGGCCTGATCACCGCCATCG
TTCTGTCCGGCCAGCTGGAGCAGTTCTCGATGGAGACGGCCCTTTCGCAG
GCGGCTATTCAGAACACGAACTGGTTCTCCGGCTACCTCATCTTCGGTGC
TGGCCTGGCTGTCGGCCTGGTCAATCTGTTCTGCGGCATTGCTGTGGGCA
TTGTGGGTTCGGGTGCCGCCCTCTCGGACGCCGCCAATGCCGCCCTGTTC
GTCAAGATCCTTATTGTGGAGATCTTCGGTTCGGCCATCGGTCTGTTCGG
CCTCATCGTGGGCATCTACATGACCTCCAAGTCCAAGATGGGCGACAAGG
AGGCAAGCTTTCTAGACCAT

BO07289.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:14:55
Subject Length Description Subject Range Query Range Score Percent Strand
VhaPPA1-1-RB 639 CG7007-PB 1..636 17..652 3180 100 Plus
VhaPPA1-1-RA 639 CG7007-PA 1..636 17..652 3180 100 Plus
VhaPPA1-2-RB 639 CG7026-PB 471..621 481..631 395 84.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:14:56
Subject Length Description Subject Range Query Range Score Percent Strand
VhaPPA1-1-RB 1348 CG7007-RB 127..762 17..652 3180 100 Plus
VhaPPA1-1-RA 1352 CG7007-RA 131..766 17..652 3180 100 Plus
VhaPPA1-2-RB 672 CG7026-RB 471..621 481..631 395 84.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:14:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14903237..14903872 652..17 3180 100 Minus
3R 32079331 3R 14899657..14899807 631..481 395 84.1 Minus
3R 32079331 3R 14899927..14900154 361..134 345 76.8 Minus
Blast to na_te.dros performed on 2014-11-26 16:14:54 has no hits.

BO07289.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:52 Download gff for BO07289.complete
Subject Subject Range Query Range Percent Splice Strand
VhaPPA1-1-RA 1..639 17..653 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:32 Download gff for BO07289.complete
Subject Subject Range Query Range Percent Splice Strand
VhaPPA1-1-RA 136..784 7..658 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:55:57 Download gff for BO07289.complete
Subject Subject Range Query Range Percent Splice Strand
VhaPPA1-1-RA 144..779 17..654 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:52 Download gff for BO07289.complete
Subject Subject Range Query Range Percent Splice Strand
VhaPPA1-1-RA 136..784 7..658 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:14:33 Download gff for BO07289.complete
Subject Subject Range Query Range Percent Splice Strand
VhaPPA1-1-RA 131..766 17..654 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:14:33 Download gff for BO07289.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14903235..14903872 17..654 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:55:57 Download gff for BO07289.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10728957..10729594 17..654 99   Minus

BO07289.pep Sequence

Translation from 16 to 670

> BO07289.pep
MAAQIRTVVSQTFLWLFLAVATILTLYFVMTGKGERVSVGWFLASSNPYM
WACLGIGLSVSLSVVGAALGIHTTGTSIVGGGVKAPRIKTKNLISVIFCE
AVAIYGLITAIVLSGQLEQFSMETALSQAAIQNTNWFSGYLIFGAGLAVG
LVNLFCGIAVGIVGSGAALSDAANAALFVKILIVEIFGSAIGLFGLIVGI
YMTSKSKMGDKEASFLDH

BO07289.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
VhaPPA1-1-PB 212 CG7007-PB 1..212 1..212 1050 100 Plus
VhaPPA1-1-PA 212 CG7007-PA 1..212 1..212 1050 100 Plus
VhaPPA1-2-PB 212 CG7026-PB 31..209 29..207 623 67.6 Plus
Vha16-1-PB 159 CG3161-PB 5..159 43..205 251 34.3 Plus
Vha16-1-PA 159 CG3161-PA 5..159 43..205 251 34.3 Plus