Clone Sequence Records
BO07289.3prime Sequence
668 bp (667 high quality bases) assembled on 2005-12-04
> BO07289.3prime
ATGGTCTAGAAAGCTTGCCTCCTTGTCGCCCATCTTGGACTTGGAGGTCA
TGTAGATGCCCACGATGAGGCCGAACAGACCGATGGCCGAACCGAAGATC
TCCACAATAAGGATCTTGACGAACAGGGCGGCATTGGCGGCGTCCGAGAG
GGCGGCACCCGAACCCACAATGCCCACAGCAATGCCGCAGAACAGATTGA
CCAGGCCGACAGCCAGGCCAGCACCGAAGATGAGGTAGCCGGAGAACCAG
TTCGTGTTCTGAATAGCCGCCTGCGAAAGGGCCGTCTCCATCGAGAACTG
CTCCAGCTGGCCGGACAGAACGATGGCGGTGATCAGGCCGTAGATGGCCA
CGGCCTCGCAGAAGATGACCGAGATCAGATTCTTGGTCTTGATGCGGGGC
GCCTTCACACCACCGCCCACGATGCTCGTGCCCGTCGTATGGATGCCCAG
GGCGGCGCCCACGACGGACAGCGAGACGGAGAGTCCGATGCCCAGGCAGG
CCCACATGTACGGGTTTGAGGAGGCCAGGAACCAGCCCACGCTCACCCGC
TCGCCCTTGCCCGTCATCACGAAGTACAGGGTCAGGATGGTGGCCACGGC
GAGGAAGAGCCACAGGAACGTTTGGGACACCACGGTGCGTATTTGGGCCG
CCATGTCGACTGATAACT
BO07289.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7007-PA | 639 | VhaPPA1-1-RA | 1..636 | 654..19 | 3180 | 100 | Minus |
CG7026-PA | 606 | CG7026-RA | 232..318 | 396..310 | 235 | 90.8 | Minus |
CG7026-PA | 606 | CG7026-RA | 505..588 | 123..40 | 170 | 88 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:21:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaPPA1-1-RB | 1348 | CG7007-RB | 127..762 | 654..19 | 3180 | 100 | Minus |
VhaPPA1-1-RA | 1352 | CG7007-RA | 131..766 | 654..19 | 3180 | 100 | Minus |
VhaPPA1-2-RB | 672 | CG7026-RB | 471..621 | 190..40 | 395 | 84.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:21:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14903237..14903872 | 19..654 | 3180 | 100 | Plus |
3R | 32079331 | 3R | 14899657..14899807 | 40..190 | 395 | 84.1 | Plus |
3R | 32079331 | 3R | 14899927..14900154 | 310..537 | 345 | 76.8 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:21:27 has no hits.
BO07289.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:14:32 Download gff for
BO07289.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7007-PA | 1..639 | 18..654 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:55:18 Download gff for
BO07289.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7007-PA | 1..639 | 18..654 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:24:48 Download gff for
BO07289.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaPPA1-1-RA | 136..784 | 13..664 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:48:48 Download gff for
BO07289.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaPPA1-1-RA | 123..771 | 13..664 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:48:48 Download gff for
BO07289.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14903232..14903880 | 13..664 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:24:48 Download gff for
BO07289.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10728954..10729602 | 13..664 | 98 | | Plus |
BO07289.5prime Sequence
668 bp (667 high quality bases) assembled on 2005-12-04
> BO07289.5prime
GAAGTTATCAGTCGACATGGCGGCCCAAATACGCACCGTGGTGTCCCAAA
CGTTCCTGTGGCTCTTCCTCGCCGTGGCCACCATCCTGACCCTGTACTTC
GTGATGACGGGCAAGGGCGAGCGGGTGAGCGTGGGCTGGTTCCTGGCCTC
CTCAAACCCGTACATGTGGGCCTGCCTGGGCATCGGACTCTCCGTCTCGC
TGTCCGTCGTGGGCGCCGCCCTGGGCATCCATACGACGGGCACGAGCATC
GTGGGCGGTGGTGTGAAGGCGCCCCGCATCAAGACCAAGAATCTGATCTC
GGTCATCTTCTGCGAGGCCGTGGCCATCTACGGCCTGATCACCGCCATCG
TTCTGTCCGGCCAGCTGGAGCAGTTCTCGATGGAGACGGCCCTTTCGCAG
GCGGCTATTCAGAACACGAACTGGTTCTCCGGCTACCTCATCTTCGGTGC
TGGCCTGGCTGTCGGCCTGGTCAATCTGTTCTGCGGCATTGCTGTGGGCA
TTGTGGGTTCGGGTGCCGCCCTCTCGGACGCCGCCAATGCCGCCCTGTTC
GTCAAGATCCTTATTGTGGAGATCTTCGGTTCGGCCATCGGTCTGTTCGG
CCTCATCGTGGGCATCTACATGACCTCCAAGTCCAAGATGGGCGACAAGG
AGGCAAGCTTTCTAGACC
BO07289.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7007-PA | 639 | VhaPPA1-1-RA | 1..636 | 17..652 | 3180 | 100 | Plus |
CG7026-PA | 606 | CG7026-RA | 232..318 | 275..361 | 235 | 90.8 | Plus |
CG7026-PA | 606 | CG7026-RA | 505..588 | 548..631 | 170 | 88 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:32:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaPPA1-1-RB | 1348 | CG7007-RB | 127..762 | 17..652 | 3180 | 100 | Plus |
VhaPPA1-1-RA | 1352 | CG7007-RA | 131..766 | 17..652 | 3180 | 100 | Plus |
VhaPPA1-2-RB | 672 | CG7026-RB | 471..621 | 481..631 | 395 | 84.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:31:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14903237..14903872 | 652..17 | 3180 | 100 | Minus |
3R | 32079331 | 3R | 14899657..14899807 | 631..481 | 395 | 84.1 | Minus |
3R | 32079331 | 3R | 14899927..14900154 | 361..134 | 345 | 76.8 | Minus |
Blast to na_te.dros performed on 2015-02-09 19:32:02 has no hits.
BO07289.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:14:34 Download gff for
BO07289.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7007-PA | 1..639 | 17..653 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:55:20 Download gff for
BO07289.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7007-PA | 1..639 | 17..653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:08:44 Download gff for
BO07289.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaPPA1-1-RA | 136..784 | 7..658 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:20:00 Download gff for
BO07289.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaPPA1-1-RA | 123..771 | 7..658 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:20:00 Download gff for
BO07289.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14903232..14903880 | 7..658 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:08:44 Download gff for
BO07289.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10728954..10729602 | 7..658 | 98 | | Minus |
BO07289.complete Sequence
670 bp assembled on 2006-12-18
GenBank Submission: FJ630737
> BO07289.complete
GAAGTTATCAGTCGACATGGCGGCCCAAATACGCACCGTGGTGTCCCAAA
CGTTCCTGTGGCTCTTCCTCGCCGTGGCCACCATCCTGACCCTGTACTTC
GTGATGACGGGCAAGGGCGAGCGGGTGAGCGTGGGCTGGTTCCTGGCCTC
CTCAAACCCGTACATGTGGGCCTGCCTGGGCATCGGACTCTCCGTCTCGC
TGTCCGTCGTGGGCGCCGCCCTGGGCATCCATACGACGGGCACGAGCATC
GTGGGCGGTGGTGTGAAGGCGCCCCGCATCAAGACCAAGAATCTGATCTC
GGTCATCTTCTGCGAGGCCGTGGCCATCTACGGCCTGATCACCGCCATCG
TTCTGTCCGGCCAGCTGGAGCAGTTCTCGATGGAGACGGCCCTTTCGCAG
GCGGCTATTCAGAACACGAACTGGTTCTCCGGCTACCTCATCTTCGGTGC
TGGCCTGGCTGTCGGCCTGGTCAATCTGTTCTGCGGCATTGCTGTGGGCA
TTGTGGGTTCGGGTGCCGCCCTCTCGGACGCCGCCAATGCCGCCCTGTTC
GTCAAGATCCTTATTGTGGAGATCTTCGGTTCGGCCATCGGTCTGTTCGG
CCTCATCGTGGGCATCTACATGACCTCCAAGTCCAAGATGGGCGACAAGG
AGGCAAGCTTTCTAGACCAT
BO07289.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:14:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaPPA1-1-RB | 639 | CG7007-PB | 1..636 | 17..652 | 3180 | 100 | Plus |
VhaPPA1-1-RA | 639 | CG7007-PA | 1..636 | 17..652 | 3180 | 100 | Plus |
VhaPPA1-2-RB | 639 | CG7026-PB | 471..621 | 481..631 | 395 | 84.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:14:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaPPA1-1-RB | 1348 | CG7007-RB | 127..762 | 17..652 | 3180 | 100 | Plus |
VhaPPA1-1-RA | 1352 | CG7007-RA | 131..766 | 17..652 | 3180 | 100 | Plus |
VhaPPA1-2-RB | 672 | CG7026-RB | 471..621 | 481..631 | 395 | 84.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:14:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14903237..14903872 | 652..17 | 3180 | 100 | Minus |
3R | 32079331 | 3R | 14899657..14899807 | 631..481 | 395 | 84.1 | Minus |
3R | 32079331 | 3R | 14899927..14900154 | 361..134 | 345 | 76.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:14:54 has no hits.
BO07289.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:52 Download gff for
BO07289.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaPPA1-1-RA | 1..639 | 17..653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:32 Download gff for
BO07289.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaPPA1-1-RA | 136..784 | 7..658 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:55:57 Download gff for
BO07289.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaPPA1-1-RA | 144..779 | 17..654 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:52 Download gff for
BO07289.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaPPA1-1-RA | 136..784 | 7..658 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:14:33 Download gff for
BO07289.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaPPA1-1-RA | 131..766 | 17..654 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:14:33 Download gff for
BO07289.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14903235..14903872 | 17..654 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:55:57 Download gff for
BO07289.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10728957..10729594 | 17..654 | 99 | | Minus |
BO07289.pep Sequence
Translation from 16 to 670
> BO07289.pep
MAAQIRTVVSQTFLWLFLAVATILTLYFVMTGKGERVSVGWFLASSNPYM
WACLGIGLSVSLSVVGAALGIHTTGTSIVGGGVKAPRIKTKNLISVIFCE
AVAIYGLITAIVLSGQLEQFSMETALSQAAIQNTNWFSGYLIFGAGLAVG
LVNLFCGIAVGIVGSGAALSDAANAALFVKILIVEIFGSAIGLFGLIVGI
YMTSKSKMGDKEASFLDH
BO07289.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:22:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaPPA1-1-PB | 212 | CG7007-PB | 1..212 | 1..212 | 1050 | 100 | Plus |
VhaPPA1-1-PA | 212 | CG7007-PA | 1..212 | 1..212 | 1050 | 100 | Plus |
VhaPPA1-2-PB | 212 | CG7026-PB | 31..209 | 29..207 | 623 | 67.6 | Plus |
Vha16-1-PB | 159 | CG3161-PB | 5..159 | 43..205 | 251 | 34.3 | Plus |
Vha16-1-PA | 159 | CG3161-PA | 5..159 | 43..205 | 251 | 34.3 | Plus |