Clone BO07290 Report

Search the DGRC for BO07290

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:72
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptCG7218-RA
Protein status:BO07290.pep: Imported from assembly
Sequenced Size:2062

Clone Sequence Records

BO07290.3prime Sequence

942 bp (774 high quality bases) assembled on 2005-12-04

> BO07290.3prime
ATGGTCTAGAAAGCTTGCCAGCTGTGTCGTTTGGTTGCCTCCCGCAATAC
CAGCAGCTCCGCCCTTCTCCACCATGCTGGGCATGCCCGGCTCCGATTCG
GAACGCTTGTGCGTTCGCTTGGGCAATCGCTGGGTGGCCTTCTTAGCCTT
GGCACTTGTCACTCCGTCGCCGGAATTGTTGAGCAGCATCAAATCCGGTT
GGCTGCGCACCAGGTCCTGCTCCTGGTAAACCTCCTGGACGGCTGAACTG
GTATTGGTGTTGGTCACCTGCTCGTTGAGGCAAACATCGTCCAAATCCAC
ATCGCTGTTGGAGAAGAGAGCTGTGGCGCCCAGTTCCAGGGAGTTGGTCA
CGTCCAGCTCCTGCTCACTGACCGCCTTCTTTGGCGTGGATGTGGATGCG
ATTGAGGTGCGCGAGAAATTCTTACTCACATCGAGATGGCCAGCACTGGG
CGGGGTCAACAGTGTGGTCACTTGGGCTGGCTTCGAGCCAATGCTAATGC
TGTTGTTATTGTTGTTATTATTATTATTGTGATTCTGTCCGCCCGTCGCA
GCCGCTGAGACAGGAGCAGCTGCGCCTATGACCGGCACATTGGTCATGCT
ACTCGGTGTAGAACTGTTGCGCTCGGTCTGATGTTCCTTCATTAGCTTGC
AGGCCTTGCCCAGCGCACAGATGGTCAGGCAAATGCGCAAGCCCATGGCA
AACAAGTAGGCCAGCAGGAAGAGCAGCCAGGCGGCTAGATTCTCGAAAGA
GACCGCTGTATAGATGGCCTTTATCAGGACCACAGCCAGCGGAAATGGAA
TGAAGCCCATGCGTCTGGCCACAAATCCGAATGATCTGAGAATGCGTGCT
TTTGCCGCGTCTGGGTCATATCGTAAGCCAAGCTGGTCGTGTACTCCCTG
TAGATGCTCTCGGGCAGCTCATTGAATCGCGTGATAAACGCA

BO07290.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7218-PA 2031 CG7218-RA 1225..2028 822..19 4020 100 Minus
CG7218-PA 2031 CG7218-RA 1104..1224 942..822 555 98.3 Minus
CG3905-PA 4107 Su(z)2-RA 3269..3301 530..498 140 96.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7218-RB 2543 CG7218-RB 1199..2123 942..19 4570 99.7 Minus
CG7218-RA 2169 CG7218-RA 1199..2123 942..19 4570 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:28:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18161812..18162736 19..942 4545 99.7 Plus
Blast to na_te.dros performed 2015-02-10 17:29:01
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 12..58 541..495 127 74.5 Minus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7050..7096 541..495 127 74.5 Minus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 29..62 536..503 116 82.4 Minus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7067..7100 536..503 116 82.4 Minus
Stalker4 7359 Stalker4 STALKER4 7359bp 2877..2906 534..505 114 86.7 Minus
Stalker 7256 Stalker STALKER 7256bp 2771..2800 534..505 114 86.7 Minus
accord2 7650 accord2 QBERT 7650bp 6261..6300 495..534 110 75 Plus
rover 7318 rover ROVER 7318bp 2714..2775 870..810 109 66.1 Minus

BO07290.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:14:35 Download gff for BO07290.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7218-PA 1105..2031 18..941 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:55:21 Download gff for BO07290.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7218-PA 1105..2031 18..941 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:05:49 Download gff for BO07290.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7218-RA 1193..2120 13..941 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:42 Download gff for BO07290.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7218-RA 1200..2127 13..941 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:42 Download gff for BO07290.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18161808..18162735 13..941 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:05:49 Download gff for BO07290.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13987530..13988457 13..941 99   Plus

BO07290.5prime Sequence

891 bp (861 high quality bases) assembled on 2005-12-04

> BO07290.5prime
GAAGTTATCAGTCGACATGAACGCCACACTCAATTCCGCGGGCGGCAAGC
GTCAGCTGCGCTTTCGCGGCGACGTCACCGGCAGCCGAGTGGAGGAACTG
CATCATCAGCAGCAGGAGGAGCAGAAGCAAAAGGCGCCGCTCGCCCAGGA
TGACGTTGCAGCGACGCCGACTGCGACGCCGGCAGCGGGCTCAGCGCAGC
AGCGACTGCAGAGCGGAACCGCCGAAACCTGCACAAACACATTCTACGAC
TTCTTCAAAGTGGAGATGACACGCGGCTATATGCTGGAGCACGACGAGGA
GCGCTATTCGGCGCGTAGGCAGAAGATCTACAGCTTCATGCGCATACCGC
GGGATCTGGAGCGATTCATGGTGTACGGGATCATGCAGTGCGCCGACTCA
TTTCTCTACATTCACACTTTTCTGCCCGTCCGATTTGTGATGGCCGTTTG
GGCCCTAGTTTCCAGGACGGTGGCAAGAATCTTTCGACTACGCAGCAGCG
GACAAAGGCTGCTATCGCCGGCGGAGATCTGTGATCTGCTGAAGGGCGTC
ATCTGGATGACGGTGACGCTGATAATGCTCCTGGTGGACACGAATCGGGT
GTACCACATCATCAAGTCACAGTCGATCATCAAGCTGTACATATTCTACA
ACATGCTGGAGGTGGGCGACCGGCTGTTGTCCGCTTTTGGTCAGGACACG
ATCGATGCTCTCTTCTGGACGGCGACAGAACCAAAGAATTCCAAGCGAGA
GCACTTTGGAGTGCTTACGCACGTTCTCTTCACGCTAATCTATGTCTTCT
TGCACAGCGGACTGATCATGTTTCAGGCCACCTGTTTGAATGTGGCGGTG
AACTCCAACAACAAGGGCCTGCTGACCATCATGATATCGAA

BO07290.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG7218-PA 2031 CG7218-RA 1..875 17..891 4375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:37:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG7218-RB 2543 CG7218-RB 96..970 17..891 4375 100 Plus
CG7218-RA 2169 CG7218-RA 96..970 17..891 4375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18163103..18163715 827..215 3065 100 Minus
3R 32079331 3R 18164103..18164302 216..17 1000 100 Minus
3R 32079331 3R 18162965..18163034 891..822 350 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:37:39 has no hits.

BO07290.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:14:36 Download gff for BO07290.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7218-PA 1..873 17..889 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:55:22 Download gff for BO07290.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7218-PA 1..873 17..889 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:47:19 Download gff for BO07290.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7218-RA 89..963 17..891 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:52:13 Download gff for BO07290.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7218-RA 96..970 17..891 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:52:13 Download gff for BO07290.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18162965..18163029 827..891 100 <- Minus
3R 18163104..18163714 216..826 100 <- Minus
3R 18164104..18164302 17..215 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:47:19 Download gff for BO07290.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13988687..13988751 827..891 100 <- Minus
arm_3R 13988826..13989436 216..826 100 <- Minus
arm_3R 13989826..13990024 17..215 100   Minus

BO07290.complete Sequence

2062 bp assembled on 2008-11-10

GenBank Submission: KX798159

> BO07290.complete
GAAGTTATCAGTCGACATGAACGCCACACTCAATTCCGCGGGCGGCAAGC
GTCAGCTGCGCTTTCGCGGCGACGTCACCGGCAGCCGAGTGGAGGAACTG
CATCATCAGCAGCAGGAGGAGCAGAAGCAAAAGGCGCCGCTCGCCCAGGA
TGACGTTGCAGCGACGCCGACTGCGACGCCGGCAGCGGGCTCAGCGCAGC
AGCGACTGCAGAGCGGAACCGCCGAAACCTGCACAAACACATTCTACGAC
TTCTTCAAAGTGGAGATGACACGCGGCTATATGCTGGAGCACGACGAGGA
GCGCTATTCGGCGCGTAGGCAGAAGATCTACAGCTTCATGCGCATACCGC
GGGATCTGGAGCGATTCATGGTGTACGGGATCATGCAGTGCGCCGACTCA
TTTCTCTACATTCACACTTTTCTGCCCGTCCGATTTGTGATGGCCGTTTG
GGCCCTAGTTTCCAGGACGGTGGCAAGAATCTTTCGACTACGCAGCAGCG
GACAAAGGCTGCTATCGCCGGCGGAGATCTGTGATCTGCTGAAGGGCGTC
ATCTGGATGACGGTGACGCTGATAATGCTCCTGGTGGACACGAATCGGGT
GTACCACATCATCAAGTCACAGTCGATCATCAAGCTGTACATATTCTACA
ACATGCTGGAGGTGGGCGACCGGCTGTTGTCCGCTTTTGGTCAGGACACG
ATCGATGCTCTCTTCTGGACGGCGACAGAACCAAAGAATTCCAAGCGAGA
GCACTTTGGAGTGCTTACGCACGTTCTCTTCACGCTAATCTATGTCTTCT
TGCACAGCGGACTGATCATGTTTCAGGCCACCTGTTTGAATGTGGCGGTG
AACTCCAACAACAAGGGCCTGCTGACCATCATGATATCGAATAATTTCGT
GGAGCTCAAGGGATCCGTGTTCAAGAAGTTCGACAAAAACAACCTGTTCC
AATTGACCTGCAGCGATGTACGAGAGCGATTCCATCTGTCTGTGCTTCTG
TTCATTGTGGTCATCCAGACCATGAAGGAGTTTGACTGGAGCATCACCCA
GTTCTGTGTAATGCTGCCCGACTGCTTTGCCGTGCTGTTCACGGAAATTC
TGATCGATTGGGTGAAGCATGCGTTTATCACGCGATTCAATGAGCTGCCG
GAGAGCATCTACAGGGAGTACACGACCAGCTTGGCCTACGATATGACCCA
GACGCGGCAAAAGCACGCATTCTCAGATCATTCGGATTTGGTGGCCAGAC
GCATGGGCTTCATTCCATTTCCGCTGGCTGTGGTCCTGATAAAGGCCATC
TATACAGCGGTCTCTTTCGAGAATCTAGCCGCCTGGCTGCTCTTCCTGCT
GGCCTACTTGTTTGCCATGGGCTTGCGCATTTGCCTGACCATCTGTGCGC
TGGGCAAGGCCTGCAAGCTAATGAAGGAACATCAGACCGAGCGCAACAGT
TCTACACCGAGTAGCATGACCAATGTGCCGGTCATAGGCGCAGCTGCTCC
TGTCTCAGCGGCTGCGACGGGCGGACAGAATCACAATAATAATAATAACA
ACAATAACAACAGCATTAGCATTGGCTCGAAGCCAGCCCAAGTGACCACA
CTGTTGACCCCGCCCAGTGCTGGCCATCTCGATGTGAGTAAGAATTTCTC
GCGCACCTCAATCGCATCCACATCCACGCCAAAGAAGGCGGTCAGTGAGC
AGGAGCTGGACGTGACCAACTCCCTGGAACTGGGCGCCACAGCTCTCTTC
TCCAACAGCGATGTGGATTTGGACGATGTTTGCCTCAACGAGCAGGTGAC
CAACACCAATACCAGTTCAGCCGTCCAGGAGGTTTACCAGGAGCAGGACC
TGGTGCGCAGCCAACCGGATTTGATGCTGCTCAACAATTCCGGCGACGGA
GTGACAAGTGCCAAGGCTAAGAAGGCCACCCAGCGATTGCCCAAGCGAAC
GCACAAGCGTTCCGAATCGGAGCCGGGCATGCCCAGCATGGTGGAGAAGG
GCGGAGCTGCTGGTATTGCGGGAGGCAACCAAACGACACAGCTGGCAAGC
TTTCTAGACCAT

BO07290.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:36:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG7218-RB 2031 CG7218-PB 1..2028 17..2044 10140 100 Plus
CG7218-RA 2031 CG7218-PA 1..2028 17..2044 10140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7218-RB 2543 CG7218-RB 96..2123 17..2044 10140 100 Plus
CG7218-RA 2169 CG7218-RA 96..2123 17..2044 10140 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:36:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18161812..18163034 2044..822 6115 100 Minus
3R 32079331 3R 18163103..18163715 827..215 3065 100 Minus
3R 32079331 3R 18164103..18164302 216..17 1000 100 Minus
Blast to na_te.dros performed 2014-11-28 00:36:25
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7050..7096 1522..1568 127 74.5 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 12..58 1522..1568 127 74.5 Plus
rover 7318 rover ROVER 7318bp 2714..2775 1192..1253 121 66.1 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 29..62 1527..1560 116 82.4 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7067..7100 1527..1560 116 82.4 Plus
Stalker4 7359 Stalker4 STALKER4 7359bp 2877..2906 1529..1558 114 86.7 Plus
Stalker 7256 Stalker STALKER 7256bp 2771..2800 1529..1558 114 86.7 Plus

BO07290.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:48:59 Download gff for BO07290.complete
Subject Subject Range Query Range Percent Splice Strand
CG7218-RA 92..2123 17..2050 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:55:40 Download gff for BO07290.complete
Subject Subject Range Query Range Percent Splice Strand
CG7218-RA 89..2116 17..2046 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:16 Download gff for BO07290.complete
Subject Subject Range Query Range Percent Splice Strand
CG7218-RA 92..2119 17..2046 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:22 Download gff for BO07290.complete
Subject Subject Range Query Range Percent Splice Strand
CG7218-RA 96..2123 17..2046 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:22 Download gff for BO07290.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18161808..18163029 827..2046 99 <- Minus
3R 18163104..18163714 216..826 100 <- Minus
3R 18164104..18164302 17..215 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:55:40 Download gff for BO07290.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13987530..13988751 827..2046 99 <- Minus
arm_3R 13988826..13989436 216..826 100 <- Minus
arm_3R 13989826..13990024 17..215 100   Minus

BO07290.pep Sequence

Translation from 16 to 2062

> BO07290.pep
MNATLNSAGGKRQLRFRGDVTGSRVEELHHQQQEEQKQKAPLAQDDVAAT
PTATPAAGSAQQRLQSGTAETCTNTFYDFFKVEMTRGYMLEHDEERYSAR
RQKIYSFMRIPRDLERFMVYGIMQCADSFLYIHTFLPVRFVMAVWALVSR
TVARIFRLRSSGQRLLSPAEICDLLKGVIWMTVTLIMLLVDTNRVYHIIK
SQSIIKLYIFYNMLEVGDRLLSAFGQDTIDALFWTATEPKNSKREHFGVL
THVLFTLIYVFLHSGLIMFQATCLNVAVNSNNKGLLTIMISNNFVELKGS
VFKKFDKNNLFQLTCSDVRERFHLSVLLFIVVIQTMKEFDWSITQFCVML
PDCFAVLFTEILIDWVKHAFITRFNELPESIYREYTTSLAYDMTQTRQKH
AFSDHSDLVARRMGFIPFPLAVVLIKAIYTAVSFENLAAWLLFLLAYLFA
MGLRICLTICALGKACKLMKEHQTERNSSTPSSMTNVPVIGAAAPVSAAA
TGGQNHNNNNNNNNNSISIGSKPAQVTTLLTPPSAGHLDVSKNFSRTSIA
STSTPKKAVSEQELDVTNSLELGATALFSNSDVDLDDVCLNEQVTNTNTS
SAVQEVYQEQDLVRSQPDLMLLNNSGDGVTSAKAKKATQRLPKRTHKRSE
SEPGMPSMVEKGGAAGIAGGNQTTQLASFLDH

BO07290.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:28:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG7218-PB 676 CG7218-PB 1..676 1..676 3459 100 Plus
CG7218-PA 676 CG7218-PA 1..676 1..676 3459 100 Plus