Clone Sequence Records
BO07291.3prime Sequence
653 bp (652 high quality bases) assembled on 2005-12-04
> BO07291.3prime
ATGGTCTAGAAAGCTTGCGCACTGACAGTTGTCAGGATTGCCAGGACGAT
TGTTTTGCGAGCCCAAGGTAATCTGATCGGGGAAATCGTTGATAACTTCA
GCCTCCGCCTCCAACTCTAACGCATTCTTGGCTATAACTTGAAACGCCAT
CTCCACGTTGATGCCCTCCTTGGCGGACGTTTCGTAGTAGGGTATATCGT
TCTTAGATTGGCACCATTGCTGCGCTCGACGCGTGGACACCTGGCGGTTG
TCCAAATCCACCTTATTGCCCAACACAACGAAGGGGAAGTGATCGGGATC
CCGTGGACTGGCCTGTATGAGGAACTCGTCGCGCCAGGAGTCGAGATTCT
TGAACGAGTTGGGCGCCGTCACATCGTAGACAAGCACGCAGCAGTCGGCT
CCGCGGTAAAACGCCACTCCAAGCGACTGGAAGCGTTCCTGACCAGCAGT
GTCCCAGATCTGCATTGTGACCACTCGGTCGTTGACCACCACCTCTTTCG
TGCAGAAATCAGCTCCGATCGTGGCTTTGTATTGGTTGGAGAAGCGTTTG
TTTACATACTGATTCATCAGAGAGGTCTTGCCCACACTGCTGTCGCCCAG
AATGATGACTTTCAGTAGGGATTTCTTACGTCCGGACATGTCGACTGATA
ACT
BO07291.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5915-PA | 624 | Rab7-RA | 1..621 | 639..19 | 3105 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:32:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab7-RC | 1280 | CG5915-RC | 150..775 | 644..19 | 3115 | 99.8 | Minus |
Rab7-RB | 1269 | CG5915-RB | 139..764 | 644..19 | 3115 | 99.8 | Minus |
Rab7-RA | 1515 | CG5915-RA | 185..810 | 644..19 | 3115 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:32:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23994243..23994603 | 462..102 | 1805 | 100 | Minus |
3R | 32079331 | 3R | 23993997..23994181 | 644..460 | 910 | 99.5 | Minus |
3R | 32079331 | 3R | 23994662..23994747 | 104..19 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 19:32:17 has no hits.
BO07291.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:14:37 Download gff for
BO07291.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab7-PA | 1..624 | 15..639 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:55:24 Download gff for
BO07291.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5915-PA | 1..624 | 15..639 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:08:46 Download gff for
BO07291.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab7-RA | 183..813 | 15..647 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:20:02 Download gff for
BO07291.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab7-RA | 183..813 | 15..647 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:20:02 Download gff for
BO07291.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23993995..23994181 | 460..647 | 98 | -> | Minus |
3R | 23994246..23994602 | 103..459 | 100 | -> | Minus |
3R | 23994664..23994750 | 15..102 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:08:46 Download gff for
BO07291.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19819717..19819903 | 460..647 | 98 | -> | Minus |
arm_3R | 19819968..19820324 | 103..459 | 100 | -> | Minus |
arm_3R | 19820386..19820472 | 15..102 | 97 | | Minus |
BO07291.5prime Sequence
653 bp (652 high quality bases) assembled on 2005-12-04
> BO07291.5prime
GAAGTTATCAGTCGACATGTCCGGACGTAAGAAATCCCTACTGAAAGTCA
TCATTCTGGGCGACAGCAGTGTGGGCAAGACCTCTCTGATGAATCAGTAT
GTAAACAAACGCTTCTCCAACCAATACAAAGCCACGATCGGAGCTGATTT
CTGCACGAAAGAGGTGGTGGTCAACGACCGAGTGGTCACAATGCAGATCT
GGGACACTGCTGGTCAGGAACGCTTCCAGTCGCTTGGAGTGGCGTTTTAC
CGCGGAGCCGACTGCTGCGTGCTTGTCTACGATGTGACGGCGCCCAACTC
GTTCAAGAATCTCGACTCCTGGCGCGACGAGTTCCTCATACAGGCCAGTC
CACGGGATCCCGATCACTTCCCCTTCGTTGTGTTGGGCAATAAGGTGGAT
TTGGACAACCGCCAGGTGTCCACGCGTCGAGCGCAGCAATGGTGCCAATC
TAAGAACGATATACCCTACTACGAAACGTCCGCCAAGGAGGGCATCAACG
TGGAGATGGCGTTTCAAGTTATAGCCAAGAATGCGTTAGAGTTGGAGGCG
GAGGCTGAAGTTATCAACGATTTCCCCGATCAGATTACCTTGGGCTCGCA
AAACAATCGTCCTGGCAATCCTGACAACTGTCAGTGCGCAAGCTTTCTAG
ACC
BO07291.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5915-PA | 624 | Rab7-RA | 1..621 | 17..637 | 3105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:11:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab7-RC | 1280 | CG5915-RC | 150..775 | 12..637 | 3115 | 99.8 | Plus |
Rab7-RB | 1269 | CG5915-RB | 139..764 | 12..637 | 3115 | 99.8 | Plus |
Rab7-RA | 1515 | CG5915-RA | 185..810 | 12..637 | 3115 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:11:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23994243..23994603 | 194..554 | 1805 | 100 | Plus |
3R | 32079331 | 3R | 23993997..23994181 | 12..196 | 910 | 99.5 | Plus |
3R | 32079331 | 3R | 23994662..23994747 | 552..637 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:11:22 has no hits.
BO07291.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:14:38 Download gff for
BO07291.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab7-PA | 1..624 | 17..641 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:55:25 Download gff for
BO07291.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5915-PA | 1..624 | 17..641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:35:37 Download gff for
BO07291.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab7-RA | 183..813 | 9..641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:07:14 Download gff for
BO07291.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab7-RA | 183..813 | 9..641 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:07:14 Download gff for
BO07291.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23993995..23994181 | 9..196 | 98 | -> | Plus |
3R | 23994246..23994602 | 197..553 | 100 | -> | Plus |
3R | 23994664..23994750 | 554..641 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:35:37 Download gff for
BO07291.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19819717..19819903 | 9..196 | 98 | -> | Plus |
arm_3R | 19819968..19820324 | 197..553 | 100 | -> | Plus |
arm_3R | 19820386..19820472 | 554..641 | 97 | | Plus |
BO07291.complete Sequence
655 bp (655 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630738
> BO07291.complete
GAAGTTATCAGTCGACATGTCCGGACGTAAGAAATCCCTACTGAAAGTCA
TCATTCTGGGCGACAGCAGTGTGGGCAAGACCTCTCTGATGAATCAGTAT
GTAAACAAACGCTTCTCCAACCAATACAAAGCCACGATCGGAGCTGATTT
CTGCACGAAAGAGGTGGTGGTCAACGACCGAGTGGTCACAATGCAGATCT
GGGACACTGCTGGTCAGGAACGCTTCCAGTCGCTTGGAGTGGCGTTTTAC
CGCGGAGCCGACTGCTGCGTGCTTGTCTACGATGTGACGGCGCCCAACTC
GTTCAAGAATCTCGACTCCTGGCGCGACGAGTTCCTCATACAGGCCAGTC
CACGGGATCCCGATCACTTCCCCTTCGTTGTGTTGGGCAATAAGGTGGAT
TTGGACAACCGCCAGGTGTCCACGCGTCGAGCGCAGCAATGGTGCCAATC
TAAGAACGATATACCCTACTACGAAACGTCCGCCAAGGAGGGCATCAACG
TGGAGATGGCGTTTCAAGTTATAGCCAAGAATGCGTTAGAGTTGGAGGCG
GAGGCTGAAGTTATCAACGATTTCCCCGATCAGATTACCTTGGGCTCGCA
AAACAATCGTCCTGGCAATCCTGACAACTGTCAGTGCGCAAGCTTTCTAG
ACCAT
BO07291.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:22:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab7-RC | 624 | CG5915-PC | 1..621 | 17..637 | 3105 | 100 | Plus |
Rab7-RB | 624 | CG5915-PB | 1..621 | 17..637 | 3105 | 100 | Plus |
Rab7-RA | 624 | CG5915-PA | 1..621 | 17..637 | 3105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:22:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab7-RC | 1280 | CG5915-RC | 150..775 | 12..637 | 3115 | 99.8 | Plus |
Rab7-RB | 1269 | CG5915-RB | 139..764 | 12..637 | 3115 | 99.8 | Plus |
Rab7-RA | 1515 | CG5915-RA | 185..810 | 12..637 | 3115 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:22:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23994243..23994603 | 194..554 | 1805 | 100 | Plus |
3R | 32079331 | 3R | 23993997..23994181 | 12..196 | 910 | 99.5 | Plus |
3R | 32079331 | 3R | 23994662..23994747 | 552..637 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:22:48 has no hits.
BO07291.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:44 Download gff for
BO07291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab7-RA | 1..624 | 17..641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:19 Download gff for
BO07291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab7-RA | 181..811 | 9..641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:22 Download gff for
BO07291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab7-RA | 190..810 | 17..639 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:05:44 Download gff for
BO07291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab7-RA | 181..811 | 9..641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:20:17 Download gff for
BO07291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab7-RA | 190..810 | 17..639 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:20:17 Download gff for
BO07291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23994002..23994181 | 17..196 | 100 | -> | Plus |
3R | 23994246..23994602 | 197..553 | 100 | -> | Plus |
3R | 23994664..23994747 | 554..639 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:22 Download gff for
BO07291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19819724..19819903 | 17..196 | 100 | -> | Plus |
arm_3R | 19819968..19820324 | 197..553 | 100 | -> | Plus |
arm_3R | 19820386..19820469 | 554..639 | 97 | | Plus |
BO07291.pep Sequence
Translation from 16 to 655
> BO07291.pep
MSGRKKSLLKVIILGDSSVGKTSLMNQYVNKRFSNQYKATIGADFCTKEV
VVNDRVVTMQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTAPNSFKNLD
SWRDEFLIQASPRDPDHFPFVVLGNKVDLDNRQVSTRRAQQWCQSKNDIP
YYETSAKEGINVEMAFQVIAKNALELEAEAEVINDFPDQITLGSQNNRPG
NPDNCQCASFLDH
BO07291.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:27:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab7-PC | 207 | CG5915-PC | 1..207 | 1..207 | 1091 | 100 | Plus |
Rab7-PB | 207 | CG5915-PB | 1..207 | 1..207 | 1091 | 100 | Plus |
Rab7-PA | 207 | CG5915-PA | 1..207 | 1..207 | 1091 | 100 | Plus |
Rab9-PA | 256 | CG9994-PA | 8..186 | 4..181 | 382 | 45 | Plus |
Rab5-PI | 219 | CG3664-PI | 23..217 | 2..205 | 331 | 39 | Plus |