Clone BO07301 Report

Search the DGRC for BO07301

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:73
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptCG16817-RA
Protein status:BO07301.pep: validated full length
Sequenced Size:586

Clone Sequence Records

BO07301.3prime Sequence

584 bp (583 high quality bases) assembled on 2005-12-04

> BO07301.3prime
ATGGTCTAGAAAGCTTGCGGCAGCTGGCTTCTTCTCCTTATCACCCTCGC
CGCCCTCCTCGTCATCCTCGTCGTTCTGGGACAGACTTGGGATGTTGTCA
TCCGAGTCCTCCTCCTCGTCATCGACGTTGAAATCGTCGAACTTGTTGTT
CCAATCGCCACCAGGGCTGTTAAGGAAATTTCCAAACATGCTGTTGTCTT
TTTGGTCACCCTCCTCGTCGTCGGACTCATCGCGCCACTTGGCAAAGTTG
GCTTTTAGGAAATGCAACTTGGTCTTGTCCGTGGTCAGCGAGGACCAGTA
GGGACCGGCCGCCTTCTTGGGTATTGTGAATTCCAGGCAGCGGCCAATGT
TCTTGCTGGTCACCTTCTCGGGATCCACCTCGTGGAGGAAGTTCAGTGTG
ACCTCGTACTTCTTCGACGGATCCAGCACGTTTACGCCCTTGAAGGTGAA
GGTTTTTTCCGTAACTTTGTGTTCGATGTCCTTGCATTCGACATCGATGA
TGACGTAGATCAAGTCATTGCGCTGGGCCCAGGAAACTGGAGGCGGAATC
AAGCCTGCTGCTGCCGACATGTCGACTGATAACT

BO07301.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG16817-PA 555 CG16817-RA 1..552 570..19 2760 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:28:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG16817-RB 809 CG16817-RB 144..695 570..19 2760 100 Minus
CG16817-RA 1120 CG16817-RA 144..695 570..19 2760 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:28:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9678716..9678978 470..208 1300 99.6 Minus
3R 32079331 3R 9679042..9679233 210..19 960 100 Minus
3R 32079331 3R 9678561..9678648 554..467 440 100 Minus
Blast to na_te.dros performed on 2015-02-13 05:28:40 has no hits.

BO07301.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:14:45 Download gff for BO07301.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16817-PA 1..555 18..570 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:55:35 Download gff for BO07301.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16817-PA 1..555 18..570 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:03:03 Download gff for BO07301.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16817-RA 140..695 19..578 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:01:24 Download gff for BO07301.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16817-RA 140..695 19..578 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:01:24 Download gff for BO07301.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9678562..9678648 467..553 100 -> Minus
3R 9678720..9678976 210..466 100 -> Minus
3R 9679043..9679233 19..209 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:03:03 Download gff for BO07301.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5504284..5504370 467..553 100 -> Minus
arm_3R 5504442..5504698 210..466 100 -> Minus
arm_3R 5504765..5504955 19..209 100   Minus

BO07301.5prime Sequence

584 bp (583 high quality bases) assembled on 2005-12-04

> BO07301.5prime
GAAGTTATCAGTCGACATGTCGGCAGCAGCAGGCTTGATTCCGCCTCCAG
TTTCCTGGGCCCAGCGCAATGACTTGATCTACGTCATCATCGATGTCGAA
TGCAAGGACATCGAACACAAAGTTACGGAAAAAACCTTCACCTTCAAGGG
CGTAAACGTGCTGGATCCGTCGAAGAAGTACGAGGTCACACTGAACTTCC
TCCACGAGGTGGATCCCGAGAAGGTGACCAGCAAGAACATTGGCCGCTGC
CTGGAATTCACAATACCCAAGAAGGCGGCCGGTCCCTACTGGTCCTCGCT
GACCACGGACAAGACCAAGTTGCATTTCCTAAAAGCCAACTTTGCCAAGT
GGCGCGATGAGTCCGACGACGAGGAGGGTGACCAAAAAGACAACAGCATG
TTTGGAAATTTCCTTAACAGCCCTGGTGGCGATTGGAACAACAAGTTCGA
CGATTTCAACGTCGATGACGAGGAGGAGGACTCGGATGACAACATCCCAA
GTCTGTCCCAGAACGACGAGGATGACGAGGAGGGCGGCGAGGGTGATAAG
GAGAAGAAGCCAGCTGCCGCAAGCTTTCTAGACC

BO07301.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG16817-PA 555 CG16817-RA 1..552 17..568 2760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG16817-RB 809 CG16817-RB 144..695 17..568 2760 100 Plus
CG16817-RA 1120 CG16817-RA 144..695 17..568 2760 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:32:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9678716..9678978 117..379 1300 99.6 Plus
3R 32079331 3R 9679042..9679233 377..568 960 100 Plus
3R 32079331 3R 9678561..9678648 33..120 440 100 Plus
Blast to na_te.dros performed on 2015-02-09 19:32:32 has no hits.

BO07301.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:14:46 Download gff for BO07301.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16817-PA 1..555 17..569 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:55:37 Download gff for BO07301.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16817-PA 1..555 17..569 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:08:49 Download gff for BO07301.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16817-RA 140..695 9..568 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:20:04 Download gff for BO07301.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16817-RA 140..695 9..568 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:20:04 Download gff for BO07301.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9678562..9678648 34..120 100 -> Plus
3R 9678720..9678976 121..377 100 -> Plus
3R 9679043..9679233 378..568 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:08:49 Download gff for BO07301.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5504284..5504370 34..120 100 -> Plus
arm_3R 5504442..5504698 121..377 100 -> Plus
arm_3R 5504765..5504955 378..568 100   Plus

BO07301.complete Sequence

586 bp (586 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630740

> BO07301.complete
GAAGTTATCAGTCGACATGTCGGCAGCAGCAGGCTTGATTCCGCCTCCAG
TTTCCTGGGCCCAGCGCAATGACTTGATCTACGTCATCATCGATGTCGAA
TGCAAGGACATCGAACACAAAGTTACGGAAAAAACCTTCACCTTCAAGGG
CGTAAACGTGCTGGATCCGTCGAAGAAGTACGAGGTCACACTGAACTTCC
TCCACGAGGTGGATCCCGAGAAGGTGACCAGCAAGAACATTGGCCGCTGC
CTGGAATTCACAATACCCAAGAAGGCGGCCGGTCCCTACTGGTCCTCGCT
GACCACGGACAAGACCAAGTTGCATTTCCTAAAAGCCAACTTTGCCAAGT
GGCGCGATGAGTCCGACGACGAGGAGGGTGACCAAAAAGACAACAGCATG
TTTGGAAATTTCCTTAACAGCCCTGGTGGCGATTGGAACAACAAGTTCGA
CGATTTCAACGTCGATGACGAGGAGGAGGACTCGGATGACAACATCCCAA
GTCTGTCCCAGAACGACGAGGATGACGAGGAGGGCGGCGAGGGTGATAAG
GAGAAGAAGCCAGCTGCCGCAAGCTTTCTAGACCAT

BO07301.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:58:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG16817-RB 555 CG16817-PB 1..552 17..568 2760 100 Plus
CG16817-RA 555 CG16817-PA 1..552 17..568 2760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:58:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG16817-RB 809 CG16817-RB 144..695 17..568 2760 100 Plus
CG16817-RA 1120 CG16817-RA 144..695 17..568 2760 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:58:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9678716..9678978 117..379 1300 99.6 Plus
3R 32079331 3R 9679042..9679233 377..568 960 100 Plus
3R 32079331 3R 9678561..9678648 33..120 440 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:58:44 has no hits.

BO07301.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:04 Download gff for BO07301.complete
Subject Subject Range Query Range Percent Splice Strand
CG16817-RA 1..555 17..569 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:05:01 Download gff for BO07301.complete
Subject Subject Range Query Range Percent Splice Strand
CG16817-RA 136..691 9..568 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:54:44 Download gff for BO07301.complete
Subject Subject Range Query Range Percent Splice Strand
CG16817-RA 144..695 17..570 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:05 Download gff for BO07301.complete
Subject Subject Range Query Range Percent Splice Strand
CG16817-RA 136..691 9..568 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:42 Download gff for BO07301.complete
Subject Subject Range Query Range Percent Splice Strand
CG16817-RA 144..695 17..570 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:35:42 Download gff for BO07301.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9678070..9678086 17..33 100 -> Plus
3R 9678562..9678648 34..120 100 -> Plus
3R 9679043..9679233 378..570 98   Plus
3R 9678720..9678976 121..377 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:54:44 Download gff for BO07301.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5504442..5504698 121..377 100 -> Plus
arm_3R 5503792..5503808 17..33 100 -> Plus
arm_3R 5504284..5504370 34..120 100 -> Plus
arm_3R 5504765..5504955 378..570 98   Plus

BO07301.pep Sequence

Translation from 16 to 586

> BO07301.pep
MSAAAGLIPPPVSWAQRNDLIYVIIDVECKDIEHKVTEKTFTFKGVNVLD
PSKKYEVTLNFLHEVDPEKVTSKNIGRCLEFTIPKKAAGPYWSSLTTDKT
KLHFLKANFAKWRDESDDEEGDQKDNSMFGNFLNSPGGDWNNKFDDFNVD
DEEEDSDDNIPSLSQNDEDDEEGGEGDKEKKPAAASFLDH

BO07301.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG16817-PB 184 CG16817-PB 1..184 1..184 993 100 Plus
CG16817-PA 184 CG16817-PA 1..184 1..184 993 100 Plus