Clone Sequence Records
BO07301.3prime Sequence
584 bp (583 high quality bases) assembled on 2005-12-04
> BO07301.3prime
ATGGTCTAGAAAGCTTGCGGCAGCTGGCTTCTTCTCCTTATCACCCTCGC
CGCCCTCCTCGTCATCCTCGTCGTTCTGGGACAGACTTGGGATGTTGTCA
TCCGAGTCCTCCTCCTCGTCATCGACGTTGAAATCGTCGAACTTGTTGTT
CCAATCGCCACCAGGGCTGTTAAGGAAATTTCCAAACATGCTGTTGTCTT
TTTGGTCACCCTCCTCGTCGTCGGACTCATCGCGCCACTTGGCAAAGTTG
GCTTTTAGGAAATGCAACTTGGTCTTGTCCGTGGTCAGCGAGGACCAGTA
GGGACCGGCCGCCTTCTTGGGTATTGTGAATTCCAGGCAGCGGCCAATGT
TCTTGCTGGTCACCTTCTCGGGATCCACCTCGTGGAGGAAGTTCAGTGTG
ACCTCGTACTTCTTCGACGGATCCAGCACGTTTACGCCCTTGAAGGTGAA
GGTTTTTTCCGTAACTTTGTGTTCGATGTCCTTGCATTCGACATCGATGA
TGACGTAGATCAAGTCATTGCGCTGGGCCCAGGAAACTGGAGGCGGAATC
AAGCCTGCTGCTGCCGACATGTCGACTGATAACT
BO07301.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16817-PA | 555 | CG16817-RA | 1..552 | 570..19 | 2760 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:28:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16817-RB | 809 | CG16817-RB | 144..695 | 570..19 | 2760 | 100 | Minus |
CG16817-RA | 1120 | CG16817-RA | 144..695 | 570..19 | 2760 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:28:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9678716..9678978 | 470..208 | 1300 | 99.6 | Minus |
3R | 32079331 | 3R | 9679042..9679233 | 210..19 | 960 | 100 | Minus |
3R | 32079331 | 3R | 9678561..9678648 | 554..467 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:28:40 has no hits.
BO07301.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:14:45 Download gff for
BO07301.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16817-PA | 1..555 | 18..570 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:55:35 Download gff for
BO07301.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16817-PA | 1..555 | 18..570 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:03:03 Download gff for
BO07301.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16817-RA | 140..695 | 19..578 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:01:24 Download gff for
BO07301.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16817-RA | 140..695 | 19..578 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:01:24 Download gff for
BO07301.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9678562..9678648 | 467..553 | 100 | -> | Minus |
3R | 9678720..9678976 | 210..466 | 100 | -> | Minus |
3R | 9679043..9679233 | 19..209 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:03:03 Download gff for
BO07301.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5504284..5504370 | 467..553 | 100 | -> | Minus |
arm_3R | 5504442..5504698 | 210..466 | 100 | -> | Minus |
arm_3R | 5504765..5504955 | 19..209 | 100 | | Minus |
BO07301.5prime Sequence
584 bp (583 high quality bases) assembled on 2005-12-04
> BO07301.5prime
GAAGTTATCAGTCGACATGTCGGCAGCAGCAGGCTTGATTCCGCCTCCAG
TTTCCTGGGCCCAGCGCAATGACTTGATCTACGTCATCATCGATGTCGAA
TGCAAGGACATCGAACACAAAGTTACGGAAAAAACCTTCACCTTCAAGGG
CGTAAACGTGCTGGATCCGTCGAAGAAGTACGAGGTCACACTGAACTTCC
TCCACGAGGTGGATCCCGAGAAGGTGACCAGCAAGAACATTGGCCGCTGC
CTGGAATTCACAATACCCAAGAAGGCGGCCGGTCCCTACTGGTCCTCGCT
GACCACGGACAAGACCAAGTTGCATTTCCTAAAAGCCAACTTTGCCAAGT
GGCGCGATGAGTCCGACGACGAGGAGGGTGACCAAAAAGACAACAGCATG
TTTGGAAATTTCCTTAACAGCCCTGGTGGCGATTGGAACAACAAGTTCGA
CGATTTCAACGTCGATGACGAGGAGGAGGACTCGGATGACAACATCCCAA
GTCTGTCCCAGAACGACGAGGATGACGAGGAGGGCGGCGAGGGTGATAAG
GAGAAGAAGCCAGCTGCCGCAAGCTTTCTAGACC
BO07301.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16817-PA | 555 | CG16817-RA | 1..552 | 17..568 | 2760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:32:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16817-RB | 809 | CG16817-RB | 144..695 | 17..568 | 2760 | 100 | Plus |
CG16817-RA | 1120 | CG16817-RA | 144..695 | 17..568 | 2760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:32:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9678716..9678978 | 117..379 | 1300 | 99.6 | Plus |
3R | 32079331 | 3R | 9679042..9679233 | 377..568 | 960 | 100 | Plus |
3R | 32079331 | 3R | 9678561..9678648 | 33..120 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 19:32:32 has no hits.
BO07301.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:14:46 Download gff for
BO07301.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16817-PA | 1..555 | 17..569 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:55:37 Download gff for
BO07301.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16817-PA | 1..555 | 17..569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:08:49 Download gff for
BO07301.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16817-RA | 140..695 | 9..568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:20:04 Download gff for
BO07301.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16817-RA | 140..695 | 9..568 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:20:04 Download gff for
BO07301.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9678562..9678648 | 34..120 | 100 | -> | Plus |
3R | 9678720..9678976 | 121..377 | 100 | -> | Plus |
3R | 9679043..9679233 | 378..568 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:08:49 Download gff for
BO07301.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5504284..5504370 | 34..120 | 100 | -> | Plus |
arm_3R | 5504442..5504698 | 121..377 | 100 | -> | Plus |
arm_3R | 5504765..5504955 | 378..568 | 100 | | Plus |
BO07301.complete Sequence
586 bp (586 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630740
> BO07301.complete
GAAGTTATCAGTCGACATGTCGGCAGCAGCAGGCTTGATTCCGCCTCCAG
TTTCCTGGGCCCAGCGCAATGACTTGATCTACGTCATCATCGATGTCGAA
TGCAAGGACATCGAACACAAAGTTACGGAAAAAACCTTCACCTTCAAGGG
CGTAAACGTGCTGGATCCGTCGAAGAAGTACGAGGTCACACTGAACTTCC
TCCACGAGGTGGATCCCGAGAAGGTGACCAGCAAGAACATTGGCCGCTGC
CTGGAATTCACAATACCCAAGAAGGCGGCCGGTCCCTACTGGTCCTCGCT
GACCACGGACAAGACCAAGTTGCATTTCCTAAAAGCCAACTTTGCCAAGT
GGCGCGATGAGTCCGACGACGAGGAGGGTGACCAAAAAGACAACAGCATG
TTTGGAAATTTCCTTAACAGCCCTGGTGGCGATTGGAACAACAAGTTCGA
CGATTTCAACGTCGATGACGAGGAGGAGGACTCGGATGACAACATCCCAA
GTCTGTCCCAGAACGACGAGGATGACGAGGAGGGCGGCGAGGGTGATAAG
GAGAAGAAGCCAGCTGCCGCAAGCTTTCTAGACCAT
BO07301.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:58:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16817-RB | 555 | CG16817-PB | 1..552 | 17..568 | 2760 | 100 | Plus |
CG16817-RA | 555 | CG16817-PA | 1..552 | 17..568 | 2760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:58:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16817-RB | 809 | CG16817-RB | 144..695 | 17..568 | 2760 | 100 | Plus |
CG16817-RA | 1120 | CG16817-RA | 144..695 | 17..568 | 2760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:58:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9678716..9678978 | 117..379 | 1300 | 99.6 | Plus |
3R | 32079331 | 3R | 9679042..9679233 | 377..568 | 960 | 100 | Plus |
3R | 32079331 | 3R | 9678561..9678648 | 33..120 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:58:44 has no hits.
BO07301.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:04 Download gff for
BO07301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16817-RA | 1..555 | 17..569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:05:01 Download gff for
BO07301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16817-RA | 136..691 | 9..568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:54:44 Download gff for
BO07301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16817-RA | 144..695 | 17..570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:05 Download gff for
BO07301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16817-RA | 136..691 | 9..568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:42 Download gff for
BO07301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16817-RA | 144..695 | 17..570 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:35:42 Download gff for
BO07301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9678070..9678086 | 17..33 | 100 | -> | Plus |
3R | 9678562..9678648 | 34..120 | 100 | -> | Plus |
3R | 9679043..9679233 | 378..570 | 98 | | Plus |
3R | 9678720..9678976 | 121..377 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:54:44 Download gff for
BO07301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5504442..5504698 | 121..377 | 100 | -> | Plus |
arm_3R | 5503792..5503808 | 17..33 | 100 | -> | Plus |
arm_3R | 5504284..5504370 | 34..120 | 100 | -> | Plus |
arm_3R | 5504765..5504955 | 378..570 | 98 | | Plus |
BO07301.pep Sequence
Translation from 16 to 586
> BO07301.pep
MSAAAGLIPPPVSWAQRNDLIYVIIDVECKDIEHKVTEKTFTFKGVNVLD
PSKKYEVTLNFLHEVDPEKVTSKNIGRCLEFTIPKKAAGPYWSSLTTDKT
KLHFLKANFAKWRDESDDEEGDQKDNSMFGNFLNSPGGDWNNKFDDFNVD
DEEEDSDDNIPSLSQNDEDDEEGGEGDKEKKPAAASFLDH
BO07301.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16817-PB | 184 | CG16817-PB | 1..184 | 1..184 | 993 | 100 | Plus |
CG16817-PA | 184 | CG16817-PA | 1..184 | 1..184 | 993 | 100 | Plus |