Clone Sequence Records
BO07302.3prime Sequence
888 bp (836 high quality bases) assembled on 2005-12-04
> BO07302.3prime
ATGGTCTAGAAAGCTTGCGAATGGAATAAAATATGAGATTCCATTGCCTT
CACATGGTCGATCCGGAAACTCTTGCTTGAATGTGCGCTCGATAACGTGA
TATTTGGACTGTAGACCTCCTCCGGGTGGAAGACCTTCGATGTCGTCTCT
GTTCTGCAGACACTTCAGCAGATCCACGTAGTCGGTTATCTTGCTAGACT
CTATCTCGTCTCTTGTGATCTTCTCGATTTGCTTTTCCAGACGATGTTCA
GCCTCTATCGCCTCCTCGGTGGGCTTCGGAGCTCCGGGGAAGGCAATGAT
GATGATGCTCATGTTGTCGCGGCTACCCTTGTGCAGGCAGGTGTCCACGA
CCTGGTTGGCGATGCTCACTAGGTTACTGGTCACCCGCATTCGCGAGTGG
ATGAAGCTGCACACGTCCTCGTTGGACATCACATCCCAGATTCCATCGCA
AGCGAGCACCAGGAACTCATCGCTATCCTGGCGGCTCTGACAGAATATCT
CCGGTTCCGGCGATACCAACTGCTCGCACTGTCCCTTCTCCTTGACGTTC
TTAAAGTCGTAATCCCCAAGGGCTCTCGACACTGCCAGGGTACCATTTAC
GCGCTTTATCATAACACTGCCACCCGCATTATAGATGCGCTCTTTCTCCT
CCGGCAGAATGGGTTTGTGATCCTGCGTGGCGAACACCGGAACACCCTGG
CGGCACAAGACGGCCCTCGAATCACCACAATTGGCGATGTACACTTGCGT
GAGGCCGACAAAGGCGCACACGGCGGTAGTTCCGCCGCATTTCTCCGACT
CCCGGGTGAATTCCGGCAGTTCCCGCATAACCTCGTCGATGCGCANGAAG
CCGGTGCGAATGCCCTTCACGTGGTCGCCTCAATGAAT
BO07302.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1906-PE | 1125 | CG1906-RE | 260..1122 | 881..19 | 4296 | 99.8 | Minus |
CG1906-PA | 1107 | CG1906-RA | 260..1092 | 881..49 | 4146 | 99.8 | Minus |
CG1906-PB | 1116 | CG1906-RB | 260..1092 | 881..49 | 4146 | 99.8 | Minus |
CG1906-PD | 1107 | CG1906-RD | 260..1092 | 881..49 | 4146 | 99.8 | Minus |
CG1906-PC | 1107 | CG1906-RC | 260..1092 | 881..49 | 4146 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:35:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alph-RE | 1683 | CG1906-RE | 668..1538 | 888..19 | 4319 | 99.8 | Minus |
alph-RC | 2341 | CG1906-RC | 433..1273 | 888..49 | 4169 | 99.8 | Minus |
alph-RD | 2417 | CG1906-RD | 509..1349 | 888..49 | 4169 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:35:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29593610..29594164 | 881..327 | 2764 | 99.8 | Minus |
3R | 32079331 | 3R | 29594225..29594344 | 329..210 | 600 | 100 | Minus |
3R | 32079331 | 3R | 29597239..29597346 | 211..104 | 540 | 100 | Minus |
3R | 32079331 | 3R | 29597419..29597474 | 103..48 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:35:33 has no hits.
BO07302.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:14:47 Download gff for
BO07302.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1906-PE | 252..1125 | 18..888 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:55:38 Download gff for
BO07302.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1906-PE | 252..1125 | 18..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:55:19 Download gff for
BO07302.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alph-RE | 668..1544 | 13..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:49:47 Download gff for
BO07302.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alph-RE | 668..1544 | 13..888 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:49:47 Download gff for
BO07302.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29593602..29594163 | 328..888 | 99 | -> | Minus |
3R | 29594227..29594344 | 210..327 | 100 | -> | Minus |
3R | 29597241..29597346 | 104..209 | 100 | -> | Minus |
3R | 29597419..29597473 | 49..103 | 100 | -> | Minus |
3R | 29604510..29604545 | 13..48 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:55:19 Download gff for
BO07302.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25423141..25423195 | 49..103 | 100 | -> | Minus |
arm_3R | 25419324..25419885 | 328..888 | 99 | -> | Minus |
arm_3R | 25419949..25420066 | 210..327 | 100 | -> | Minus |
arm_3R | 25422963..25423068 | 104..209 | 100 | -> | Minus |
arm_3R | 25430232..25430267 | 13..48 | 91 | | Minus |
BO07302.5prime Sequence
932 bp (808 high quality bases) assembled on 2005-12-04
> BO07302.5prime
GAAGTTATCAGTCGACATGGGCGGATTCCTGGATAAGCCGAAAACCGCCA
AGCACAATGACGAGGGTGAGGGCAACAAGCTGCTCTTCGGGGTCAGCTCG
ATGCAGGGATGGCGGTCGGAGATGGAGGACGCCTACTACGCTCGTGCCGG
GCTGGGGGATGCCCTGCCGGACTGGAGCTTCTTTGCCGTGTTCGACGGGC
ATGCCGGATGCAAGGTGTCGGAGCACTGTGCCAAGCACCTTCTGGAGAGC
ATTATTAGCACCGAGGAATTCATTGGAGGCGACCACGTGAAGGGCATTCG
CACCGGCTTCCTGCGCATCGACGAGGTTATGCGGGAACTGCCGGAATTCA
CCCGGGAGTCGGAGAAATGCGGCGGAACTACCGCCGTGTGCGCCTTTGTC
GGCCTCACGCAAGTGTACATCGCCAATTGTGGTGATTCGAGGGCCGTCTT
GTGCCGCCAGGGTGTTCCGGTGTTCGCCACGCAGGATCACAAACCCATTC
TGCCGGAGGAGAAAGAGCGCATCTATAATGCGGGTGGCAGTGTTATGATA
AAGCGCGTAAATGGTACCCTGGCAGTGTCGAGAGCCCTTGGGGATTACGA
CTTTAAGAACGTCAAGGAGAAGGGACAGTGCGAGCAGTTGGTATCGCCGG
AACCGGAGATATTCTGTCAGAGCCGCCAGGATAGCGATGAGTTCCTGGTG
CTCGCTTGCGATGGAATCTGGGATGTGATGTCCAACGAGGACGTGTGCAG
CTTCATCCACTCGCGAATGCGGGTGACCAGTAACCTAGTGAGCATCGCCA
ACCAGGTCGTGGACACCTGCCTGCACAAGGGTAGCCGCGACAACATGAGC
ATCATCATCATTGCCTTCCCCGGAGCTCCGAAGCCCACCGAGGAGGCGAT
AGAGGCTGAACATCGTCTGGAAAAGCAATCGA
BO07302.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1906-PA | 1107 | CG1906-RA | 1..912 | 17..928 | 4560 | 100 | Plus |
CG1906-PB | 1116 | CG1906-RB | 1..912 | 17..928 | 4560 | 100 | Plus |
CG1906-PE | 1125 | CG1906-RE | 1..912 | 17..928 | 4560 | 100 | Plus |
CG1906-PD | 1107 | CG1906-RD | 1..912 | 17..928 | 4560 | 100 | Plus |
CG1906-PC | 1107 | CG1906-RC | 1..912 | 17..928 | 4560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:21:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alph-RC | 2341 | CG1906-RC | 173..1093 | 8..928 | 4575 | 99.8 | Plus |
alph-RD | 2417 | CG1906-RD | 249..1169 | 8..928 | 4575 | 99.8 | Plus |
alph-RE | 1683 | CG1906-RE | 408..1328 | 8..928 | 4575 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:21:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29593342..29594164 | 8..830 | 4085 | 99.8 | Plus |
3R | 32079331 | 3R | 29594225..29594325 | 828..928 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:21:22 has no hits.
BO07302.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:14:49 Download gff for
BO07302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1906-PC | 1..916 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:55:39 Download gff for
BO07302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1906-PC | 1..916 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:11:07 Download gff for
BO07302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alph-RE | 408..1332 | 8..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:42:17 Download gff for
BO07302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alph-RE | 408..1332 | 8..931 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:42:17 Download gff for
BO07302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29593342..29594163 | 8..829 | 99 | -> | Plus |
3R | 29594227..29594329 | 830..931 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:11:07 Download gff for
BO07302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25419064..25419885 | 8..829 | 99 | -> | Plus |
arm_3R | 25419949..25420051 | 830..931 | 99 | | Plus |
BO07302.complete Sequence
1156 bp (1156 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630741
> BO07302.complete
GAAGTTATCAGTCGACATGGGCGGATTCCTGGATAAGCCGAAAACCGCCA
AGCACAATGACGAGGGTGAGGGCAACAAGCTGCTCTTCGGGGTCAGCTCG
ATGCAGGGATGGCGGTCGGAGATGGAGGACGCCTACTACGCTCGTGCCGG
GCTGGGGGATGCCCTGCCGGACTGGAGCTTCTTTGCCGTGTTCGACGGGC
ATGCCGGATGCAAGGTGTCGGAGCACTGTGCCAAGCACCTTCTGGAGAGC
ATTATTAGCACCGAGGAATTCATTGGAGGCGACCACGTGAAGGGCATTCG
CACCGGCTTCCTGCGCATCGACGAGGTTATGCGGGAACTGCCGGAATTCA
CCCGGGAGTCGGAGAAATGCGGCGGAACTACCGCCGTGTGCGCCTTTGTC
GGCCTCACGCAAGTGTACATCGCCAATTGTGGTGATTCGAGGGCCGTCTT
GTGCCGCCAGGGTGTTCCGGTGTTCGCCACGCAGGATCACAAACCCATTC
TGCCGGAGGAGAAAGAGCGCATCTATAATGCGGGTGGCAGTGTTATGATA
AAGCGCGTAAATGGTACCCTGGCAGTGTCGAGAGCCCTTGGGGATTACGA
CTTTAAGAACGTCAAGGAGAAGGGACAGTGCGAGCAGTTGGTATCGCCGG
AACCGGAGATATTCTGTCAGAGCCGCCAGGATAGCGATGAGTTCCTGGTG
CTCGCTTGCGATGGAATCTGGGATGTGATGTCCAACGAGGACGTGTGCAG
CTTCATCCACTCGCGAATGCGGGTGACCAGTAACCTAGTGAGCATCGCCA
ACCAGGTCGTGGACACCTGCCTGCACAAGGGTAGCCGCGACAACATGAGC
ATCATCATCATTGCCTTCCCCGGAGCTCCGAAGCCCACCGAGGAGGCGAT
AGAGGCTGAACATCGTCTGGAAAAGCAAATCGAGAAGATCACAAGAGACG
AGATAGAGTCTAGCAAGATAACCGACTACGTGGATCTGCTGAAGTGTCTG
CAGAACAGAGACGACATCGAAGGTCTTCCACCCGGAGGAGGTCTACAGTC
CAAATATCACGTTATCGAGCGCACATTCAAGCAAGAGTTTCCGGATCGAC
CATGTGAAGGCAATGGAATCTCATATTTTATTCCATTCGCAAGCTTTCTA
GACCAT
BO07302.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:34:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alph-RE | 1125 | CG1906-PE | 1..1122 | 17..1138 | 5610 | 100 | Plus |
alph-RC | 1107 | CG1906-PC | 1..1092 | 17..1108 | 5460 | 100 | Plus |
alph-RD | 1107 | CG1906-PD | 1..1092 | 17..1108 | 5460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:34:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alph-RE | 1683 | CG1906-RE | 408..1538 | 8..1138 | 5625 | 99.8 | Plus |
alph-RC | 2341 | CG1906-RC | 173..1273 | 8..1108 | 5475 | 99.8 | Plus |
alph-RD | 2417 | CG1906-RD | 249..1349 | 8..1108 | 5475 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:34:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29593342..29594164 | 8..830 | 4085 | 99.8 | Plus |
3R | 32079331 | 3R | 29594225..29594344 | 828..947 | 600 | 100 | Plus |
3R | 32079331 | 3R | 29597239..29597346 | 946..1053 | 540 | 100 | Plus |
3R | 32079331 | 3R | 29597419..29597474 | 1054..1109 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:34:25 has no hits.
BO07302.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:06 Download gff for
BO07302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alph-RE | 1..1125 | 17..1139 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:56:59 Download gff for
BO07302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alph-RE | 426..1547 | 17..1140 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:56 Download gff for
BO07302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alph-RE | 417..1538 | 17..1140 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:06 Download gff for
BO07302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alph-RE | 417..1553 | 8..1144 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:45 Download gff for
BO07302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alph-RE | 417..1538 | 17..1140 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:45 Download gff for
BO07302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29604510..29604539 | 1109..1140 | 93 | | Plus |
3R | 29594227..29594344 | 830..947 | 100 | -> | Plus |
3R | 29597241..29597346 | 948..1053 | 100 | -> | Plus |
3R | 29597419..29597473 | 1054..1108 | 100 | -> | Plus |
3R | 29593351..29594163 | 17..829 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:56 Download gff for
BO07302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25419073..25419885 | 17..829 | 100 | -> | Plus |
arm_3R | 25419949..25420066 | 830..947 | 100 | -> | Plus |
arm_3R | 25422963..25423068 | 948..1053 | 100 | -> | Plus |
arm_3R | 25423141..25423195 | 1054..1108 | 100 | -> | Plus |
arm_3R | 25430232..25430261 | 1109..1140 | 93 | | Plus |
BO07302.pep Sequence
Translation from 16 to 1156
> BO07302.pep
MGGFLDKPKTAKHNDEGEGNKLLFGVSSMQGWRSEMEDAYYARAGLGDAL
PDWSFFAVFDGHAGCKVSEHCAKHLLESIISTEEFIGGDHVKGIRTGFLR
IDEVMRELPEFTRESEKCGGTTAVCAFVGLTQVYIANCGDSRAVLCRQGV
PVFATQDHKPILPEEKERIYNAGGSVMIKRVNGTLAVSRALGDYDFKNVK
EKGQCEQLVSPEPEIFCQSRQDSDEFLVLACDGIWDVMSNEDVCSFIHSR
MRVTSNLVSIANQVVDTCLHKGSRDNMSIIIIAFPGAPKPTEEAIEAEHR
LEKQIEKITRDEIESSKITDYVDLLKCLQNRDDIEGLPPGGGLQSKYHVI
ERTFKQEFPDRPCEGNGISYFIPFASFLDH
BO07302.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alph-PE | 374 | CG1906-PE | 1..374 | 1..374 | 1984 | 100 | Plus |
alph-PC | 368 | CG1906-PC | 1..364 | 1..364 | 1928 | 100 | Plus |
alph-PD | 368 | CG1906-PD | 1..364 | 1..364 | 1928 | 100 | Plus |
alph-PA | 368 | CG1906-PA | 1..364 | 1..364 | 1928 | 100 | Plus |
alph-PB | 371 | CG1906-PB | 1..364 | 1..364 | 1928 | 100 | Plus |