Clone BO07302 Report

Search the DGRC for BO07302

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:73
Well:2
Vector:pDNR-Dual
Associated Gene/Transcriptalph-RE
Protein status:BO07302.pep: validated full length
Sequenced Size:1156

Clone Sequence Records

BO07302.3prime Sequence

888 bp (836 high quality bases) assembled on 2005-12-04

> BO07302.3prime
ATGGTCTAGAAAGCTTGCGAATGGAATAAAATATGAGATTCCATTGCCTT
CACATGGTCGATCCGGAAACTCTTGCTTGAATGTGCGCTCGATAACGTGA
TATTTGGACTGTAGACCTCCTCCGGGTGGAAGACCTTCGATGTCGTCTCT
GTTCTGCAGACACTTCAGCAGATCCACGTAGTCGGTTATCTTGCTAGACT
CTATCTCGTCTCTTGTGATCTTCTCGATTTGCTTTTCCAGACGATGTTCA
GCCTCTATCGCCTCCTCGGTGGGCTTCGGAGCTCCGGGGAAGGCAATGAT
GATGATGCTCATGTTGTCGCGGCTACCCTTGTGCAGGCAGGTGTCCACGA
CCTGGTTGGCGATGCTCACTAGGTTACTGGTCACCCGCATTCGCGAGTGG
ATGAAGCTGCACACGTCCTCGTTGGACATCACATCCCAGATTCCATCGCA
AGCGAGCACCAGGAACTCATCGCTATCCTGGCGGCTCTGACAGAATATCT
CCGGTTCCGGCGATACCAACTGCTCGCACTGTCCCTTCTCCTTGACGTTC
TTAAAGTCGTAATCCCCAAGGGCTCTCGACACTGCCAGGGTACCATTTAC
GCGCTTTATCATAACACTGCCACCCGCATTATAGATGCGCTCTTTCTCCT
CCGGCAGAATGGGTTTGTGATCCTGCGTGGCGAACACCGGAACACCCTGG
CGGCACAAGACGGCCCTCGAATCACCACAATTGGCGATGTACACTTGCGT
GAGGCCGACAAAGGCGCACACGGCGGTAGTTCCGCCGCATTTCTCCGACT
CCCGGGTGAATTCCGGCAGTTCCCGCATAACCTCGTCGATGCGCANGAAG
CCGGTGCGAATGCCCTTCACGTGGTCGCCTCAATGAAT

BO07302.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG1906-PE 1125 CG1906-RE 260..1122 881..19 4296 99.8 Minus
CG1906-PA 1107 CG1906-RA 260..1092 881..49 4146 99.8 Minus
CG1906-PB 1116 CG1906-RB 260..1092 881..49 4146 99.8 Minus
CG1906-PD 1107 CG1906-RD 260..1092 881..49 4146 99.8 Minus
CG1906-PC 1107 CG1906-RC 260..1092 881..49 4146 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:35:35
Subject Length Description Subject Range Query Range Score Percent Strand
alph-RE 1683 CG1906-RE 668..1538 888..19 4319 99.8 Minus
alph-RC 2341 CG1906-RC 433..1273 888..49 4169 99.8 Minus
alph-RD 2417 CG1906-RD 509..1349 888..49 4169 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:35:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29593610..29594164 881..327 2764 99.8 Minus
3R 32079331 3R 29594225..29594344 329..210 600 100 Minus
3R 32079331 3R 29597239..29597346 211..104 540 100 Minus
3R 32079331 3R 29597419..29597474 103..48 280 100 Minus
Blast to na_te.dros performed on 2015-02-11 03:35:33 has no hits.

BO07302.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:14:47 Download gff for BO07302.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1906-PE 252..1125 18..888 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:55:38 Download gff for BO07302.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1906-PE 252..1125 18..888 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:55:19 Download gff for BO07302.3prime
Subject Subject Range Query Range Percent Splice Strand
alph-RE 668..1544 13..888 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:49:47 Download gff for BO07302.3prime
Subject Subject Range Query Range Percent Splice Strand
alph-RE 668..1544 13..888 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:49:47 Download gff for BO07302.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29593602..29594163 328..888 99 -> Minus
3R 29594227..29594344 210..327 100 -> Minus
3R 29597241..29597346 104..209 100 -> Minus
3R 29597419..29597473 49..103 100 -> Minus
3R 29604510..29604545 13..48 91   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:55:19 Download gff for BO07302.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25423141..25423195 49..103 100 -> Minus
arm_3R 25419324..25419885 328..888 99 -> Minus
arm_3R 25419949..25420066 210..327 100 -> Minus
arm_3R 25422963..25423068 104..209 100 -> Minus
arm_3R 25430232..25430267 13..48 91   Minus

BO07302.5prime Sequence

932 bp (808 high quality bases) assembled on 2005-12-04

> BO07302.5prime
GAAGTTATCAGTCGACATGGGCGGATTCCTGGATAAGCCGAAAACCGCCA
AGCACAATGACGAGGGTGAGGGCAACAAGCTGCTCTTCGGGGTCAGCTCG
ATGCAGGGATGGCGGTCGGAGATGGAGGACGCCTACTACGCTCGTGCCGG
GCTGGGGGATGCCCTGCCGGACTGGAGCTTCTTTGCCGTGTTCGACGGGC
ATGCCGGATGCAAGGTGTCGGAGCACTGTGCCAAGCACCTTCTGGAGAGC
ATTATTAGCACCGAGGAATTCATTGGAGGCGACCACGTGAAGGGCATTCG
CACCGGCTTCCTGCGCATCGACGAGGTTATGCGGGAACTGCCGGAATTCA
CCCGGGAGTCGGAGAAATGCGGCGGAACTACCGCCGTGTGCGCCTTTGTC
GGCCTCACGCAAGTGTACATCGCCAATTGTGGTGATTCGAGGGCCGTCTT
GTGCCGCCAGGGTGTTCCGGTGTTCGCCACGCAGGATCACAAACCCATTC
TGCCGGAGGAGAAAGAGCGCATCTATAATGCGGGTGGCAGTGTTATGATA
AAGCGCGTAAATGGTACCCTGGCAGTGTCGAGAGCCCTTGGGGATTACGA
CTTTAAGAACGTCAAGGAGAAGGGACAGTGCGAGCAGTTGGTATCGCCGG
AACCGGAGATATTCTGTCAGAGCCGCCAGGATAGCGATGAGTTCCTGGTG
CTCGCTTGCGATGGAATCTGGGATGTGATGTCCAACGAGGACGTGTGCAG
CTTCATCCACTCGCGAATGCGGGTGACCAGTAACCTAGTGAGCATCGCCA
ACCAGGTCGTGGACACCTGCCTGCACAAGGGTAGCCGCGACAACATGAGC
ATCATCATCATTGCCTTCCCCGGAGCTCCGAAGCCCACCGAGGAGGCGAT
AGAGGCTGAACATCGTCTGGAAAAGCAATCGA

BO07302.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG1906-PA 1107 CG1906-RA 1..912 17..928 4560 100 Plus
CG1906-PB 1116 CG1906-RB 1..912 17..928 4560 100 Plus
CG1906-PE 1125 CG1906-RE 1..912 17..928 4560 100 Plus
CG1906-PD 1107 CG1906-RD 1..912 17..928 4560 100 Plus
CG1906-PC 1107 CG1906-RC 1..912 17..928 4560 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:21:23
Subject Length Description Subject Range Query Range Score Percent Strand
alph-RC 2341 CG1906-RC 173..1093 8..928 4575 99.8 Plus
alph-RD 2417 CG1906-RD 249..1169 8..928 4575 99.8 Plus
alph-RE 1683 CG1906-RE 408..1328 8..928 4575 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29593342..29594164 8..830 4085 99.8 Plus
3R 32079331 3R 29594225..29594325 828..928 505 100 Plus
Blast to na_te.dros performed on 2015-02-13 16:21:22 has no hits.

BO07302.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:14:49 Download gff for BO07302.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1906-PC 1..916 17..931 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:55:39 Download gff for BO07302.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1906-PC 1..916 17..931 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:11:07 Download gff for BO07302.5prime
Subject Subject Range Query Range Percent Splice Strand
alph-RE 408..1332 8..931 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:42:17 Download gff for BO07302.5prime
Subject Subject Range Query Range Percent Splice Strand
alph-RE 408..1332 8..931 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:42:17 Download gff for BO07302.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29593342..29594163 8..829 99 -> Plus
3R 29594227..29594329 830..931 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:11:07 Download gff for BO07302.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25419064..25419885 8..829 99 -> Plus
arm_3R 25419949..25420051 830..931 99   Plus

BO07302.complete Sequence

1156 bp (1156 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630741

> BO07302.complete
GAAGTTATCAGTCGACATGGGCGGATTCCTGGATAAGCCGAAAACCGCCA
AGCACAATGACGAGGGTGAGGGCAACAAGCTGCTCTTCGGGGTCAGCTCG
ATGCAGGGATGGCGGTCGGAGATGGAGGACGCCTACTACGCTCGTGCCGG
GCTGGGGGATGCCCTGCCGGACTGGAGCTTCTTTGCCGTGTTCGACGGGC
ATGCCGGATGCAAGGTGTCGGAGCACTGTGCCAAGCACCTTCTGGAGAGC
ATTATTAGCACCGAGGAATTCATTGGAGGCGACCACGTGAAGGGCATTCG
CACCGGCTTCCTGCGCATCGACGAGGTTATGCGGGAACTGCCGGAATTCA
CCCGGGAGTCGGAGAAATGCGGCGGAACTACCGCCGTGTGCGCCTTTGTC
GGCCTCACGCAAGTGTACATCGCCAATTGTGGTGATTCGAGGGCCGTCTT
GTGCCGCCAGGGTGTTCCGGTGTTCGCCACGCAGGATCACAAACCCATTC
TGCCGGAGGAGAAAGAGCGCATCTATAATGCGGGTGGCAGTGTTATGATA
AAGCGCGTAAATGGTACCCTGGCAGTGTCGAGAGCCCTTGGGGATTACGA
CTTTAAGAACGTCAAGGAGAAGGGACAGTGCGAGCAGTTGGTATCGCCGG
AACCGGAGATATTCTGTCAGAGCCGCCAGGATAGCGATGAGTTCCTGGTG
CTCGCTTGCGATGGAATCTGGGATGTGATGTCCAACGAGGACGTGTGCAG
CTTCATCCACTCGCGAATGCGGGTGACCAGTAACCTAGTGAGCATCGCCA
ACCAGGTCGTGGACACCTGCCTGCACAAGGGTAGCCGCGACAACATGAGC
ATCATCATCATTGCCTTCCCCGGAGCTCCGAAGCCCACCGAGGAGGCGAT
AGAGGCTGAACATCGTCTGGAAAAGCAAATCGAGAAGATCACAAGAGACG
AGATAGAGTCTAGCAAGATAACCGACTACGTGGATCTGCTGAAGTGTCTG
CAGAACAGAGACGACATCGAAGGTCTTCCACCCGGAGGAGGTCTACAGTC
CAAATATCACGTTATCGAGCGCACATTCAAGCAAGAGTTTCCGGATCGAC
CATGTGAAGGCAATGGAATCTCATATTTTATTCCATTCGCAAGCTTTCTA
GACCAT

BO07302.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:34:26
Subject Length Description Subject Range Query Range Score Percent Strand
alph-RE 1125 CG1906-PE 1..1122 17..1138 5610 100 Plus
alph-RC 1107 CG1906-PC 1..1092 17..1108 5460 100 Plus
alph-RD 1107 CG1906-PD 1..1092 17..1108 5460 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
alph-RE 1683 CG1906-RE 408..1538 8..1138 5625 99.8 Plus
alph-RC 2341 CG1906-RC 173..1273 8..1108 5475 99.8 Plus
alph-RD 2417 CG1906-RD 249..1349 8..1108 5475 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29593342..29594164 8..830 4085 99.8 Plus
3R 32079331 3R 29594225..29594344 828..947 600 100 Plus
3R 32079331 3R 29597239..29597346 946..1053 540 100 Plus
3R 32079331 3R 29597419..29597474 1054..1109 280 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:34:25 has no hits.

BO07302.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:06 Download gff for BO07302.complete
Subject Subject Range Query Range Percent Splice Strand
alph-RE 1..1125 17..1139 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:56:59 Download gff for BO07302.complete
Subject Subject Range Query Range Percent Splice Strand
alph-RE 426..1547 17..1140 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:56 Download gff for BO07302.complete
Subject Subject Range Query Range Percent Splice Strand
alph-RE 417..1538 17..1140 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:06 Download gff for BO07302.complete
Subject Subject Range Query Range Percent Splice Strand
alph-RE 417..1553 8..1144 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:45 Download gff for BO07302.complete
Subject Subject Range Query Range Percent Splice Strand
alph-RE 417..1538 17..1140 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:45 Download gff for BO07302.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29604510..29604539 1109..1140 93   Plus
3R 29594227..29594344 830..947 100 -> Plus
3R 29597241..29597346 948..1053 100 -> Plus
3R 29597419..29597473 1054..1108 100 -> Plus
3R 29593351..29594163 17..829 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:56 Download gff for BO07302.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25419073..25419885 17..829 100 -> Plus
arm_3R 25419949..25420066 830..947 100 -> Plus
arm_3R 25422963..25423068 948..1053 100 -> Plus
arm_3R 25423141..25423195 1054..1108 100 -> Plus
arm_3R 25430232..25430261 1109..1140 93   Plus

BO07302.pep Sequence

Translation from 16 to 1156

> BO07302.pep
MGGFLDKPKTAKHNDEGEGNKLLFGVSSMQGWRSEMEDAYYARAGLGDAL
PDWSFFAVFDGHAGCKVSEHCAKHLLESIISTEEFIGGDHVKGIRTGFLR
IDEVMRELPEFTRESEKCGGTTAVCAFVGLTQVYIANCGDSRAVLCRQGV
PVFATQDHKPILPEEKERIYNAGGSVMIKRVNGTLAVSRALGDYDFKNVK
EKGQCEQLVSPEPEIFCQSRQDSDEFLVLACDGIWDVMSNEDVCSFIHSR
MRVTSNLVSIANQVVDTCLHKGSRDNMSIIIIAFPGAPKPTEEAIEAEHR
LEKQIEKITRDEIESSKITDYVDLLKCLQNRDDIEGLPPGGGLQSKYHVI
ERTFKQEFPDRPCEGNGISYFIPFASFLDH

BO07302.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:47
Subject Length Description Subject Range Query Range Score Percent Strand
alph-PE 374 CG1906-PE 1..374 1..374 1984 100 Plus
alph-PC 368 CG1906-PC 1..364 1..364 1928 100 Plus
alph-PD 368 CG1906-PD 1..364 1..364 1928 100 Plus
alph-PA 368 CG1906-PA 1..364 1..364 1928 100 Plus
alph-PB 371 CG1906-PB 1..364 1..364 1928 100 Plus