Clone Sequence Records
BO07303.3prime Sequence
710 bp (709 high quality bases) assembled on 2005-12-04
> BO07303.3prime
ATGGTCTAGAAAGCTTGCCTTCTTGGGTGTCTTTTTCTTTCCGCTAGTGG
TGCTGGCTTCTTTCTTTCCCTGGTAGAGGCCCGTATAATAGCCGGACATG
TACCAGGCGGTGAGCATGGCCACGAAGTCCTGTTCGGCGCCGTCCCCTTG
TCCGACAATCATGGGCGGTACTGGTGGCATGGGCGGCATAACCAGTCCGC
CAGAGATCCTACTCCTTCTGGATGACTTGGGAGTCTTTGAATGACTACCA
GCGGATGCCTTAGGGCGGCTCAACTGCTCGTCCTCATCCTTCTTGGCGAT
AAGGAACTGCTCGCGACGCACACGCTTGCCCCAGGACGGCAGGAGGTCCA
CGAGCAACACCTCCTGCTCGTTCTCATAGCCCAAATAGCGGAGTACGCAG
GTGCCCTTCTCCTCGTTAATAGACACCACAGCGCCCTCGTAGTCCACACC
ATCCACGTAGGTGGCCCTGGCGTAGTCGCCTACTTTGAAGGATACTGGTT
CCGGGCTGGTAGCCCCACCAGTGGCCGAGATCTCGCCAGCTTCTTCTTCA
GCTGCGGCAGCGTTCTCCTCCTCGCGCTTGTTGGTGGAATCGGCGAGGCG
GCGGGCCAAAGCTTCGCGGGCCAGTCCCACCGACTCGTCGTACGTCTTCA
CCAGCAAGGAGTCATCCCACACCGCGGCGTTCGTCTCGTCGGACATGTCG
ACTGATAACT
BO07303.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16725-PA | 681 | Smn-RA | 1..678 | 696..19 | 3390 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:21:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smn-RB | 1086 | CG16725-RB | 298..979 | 700..19 | 3395 | 99.9 | Minus |
| Smn-RA | 879 | CG16725-RA | 91..772 | 700..19 | 3395 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:21:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16580505..16581186 | 19..700 | 3395 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:21:38 has no hits.
BO07303.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:14:50 Download gff for
BO07303.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smn-PA | 1..681 | 15..696 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:55:40 Download gff for
BO07303.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16725-PA | 1..681 | 15..696 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:24:50 Download gff for
BO07303.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smn-RA | 88..777 | 11..703 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:48:50 Download gff for
BO07303.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smn-RA | 88..777 | 11..703 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:48:50 Download gff for
BO07303.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16580500..16581189 | 11..703 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:24:50 Download gff for
BO07303.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16573600..16574289 | 11..703 | 99 | | Plus |
BO07303.5prime Sequence
710 bp (709 high quality bases) assembled on 2005-12-04
> BO07303.5prime
GAAGTTATCAGTCGACATGTCCGACGAGACGAACGCCGCGGTGTGGGATG
ACTCCTTGCTGGTGAAGACGTACGACGAGTCGGTGGGACTGGCCCGCGAA
GCTTTGGCCCGCCGCCTCGCCGATTCCACCAACAAGCGCGAGGAGGAGAA
CGCTGCCGCAGCTGAAGAAGAAGCTGGCGAGATCTCGGCCACTGGTGGGG
CTACCAGCCCGGAACCAGTATCCTTCAAAGTAGGCGACTACGCCAGGGCC
ACCTACGTGGATGGTGTGGACTACGAGGGCGCTGTGGTGTCTATTAACGA
GGAGAAGGGCACCTGCGTACTCCGCTATTTGGGCTATGAGAACGAGCAGG
AGGTGTTGCTCGTGGACCTCCTGCCGTCCTGGGGCAAGCGTGTGCGTCGC
GAGCAGTTCCTTATCGCCAAGAAGGATGAGGACGAGCAGTTGAGCCGCCC
TAAGGCATCCGCTGGTAGTCATTCAAAGACTCCCAAGTCATCCAGAAGGA
GTAGGATCTCTGGCGGACTGGTTATGCCGCCCATGCCACCAGTACCGCCC
ATGATTGTCGGACAAGGGGACGGCGCCGAACAGGACTTCGTGGCCATGCT
CACCGCCTGGTACATGTCCGGCTATTATACGGGCCTCTACCAGGGAAAGA
AAGAAGCCAGCACCACTAGCGGAAAGAAAAAGACACCCAAGAAGGCAAGC
TTTCTAGACC
BO07303.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16725-PA | 681 | Smn-RA | 1..678 | 17..694 | 3390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:46:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smn-RB | 1086 | CG16725-RB | 298..979 | 13..694 | 3395 | 99.9 | Plus |
| Smn-RA | 879 | CG16725-RA | 91..772 | 13..694 | 3395 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:46:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16580505..16581186 | 694..13 | 3395 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:46:17 has no hits.
BO07303.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:14:51 Download gff for
BO07303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smn-PA | 1..681 | 17..698 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:55:41 Download gff for
BO07303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16725-PA | 1..681 | 17..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:04:27 Download gff for
BO07303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smn-RA | 88..777 | 10..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:25:54 Download gff for
BO07303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smn-RA | 88..777 | 10..702 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:25:54 Download gff for
BO07303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16580500..16581189 | 10..702 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:04:27 Download gff for
BO07303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16573600..16574289 | 10..702 | 99 | | Minus |
BO07303.complete Sequence
712 bp (712 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630742
> BO07303.complete
GAAGTTATCAGTCGACATGTCCGACGAGACGAACGCCGCGGTGTGGGATG
ACTCCTTGCTGGTGAAGACGTACGACGAGTCGGTGGGACTGGCCCGCGAA
GCTTTGGCCCGCCGCCTCGCCGATTCCACCAACAAGCGCGAGGAGGAGAA
CGCTGCCGCAGCTGAAGAAGAAGCTGGCGAGATCTCGGCCACTGGTGGGG
CTACCAGCCCGGAACCAGTATCCTTCAAAGTAGGCGACTACGCCAGGGCC
ACCTACGTGGATGGTGTGGACTACGAGGGCGCTGTGGTGTCTATTAACGA
GGAGAAGGGCACCTGCGTACTCCGCTATTTGGGCTATGAGAACGAGCAGG
AGGTGTTGCTCGTGGACCTCCTGCCGTCCTGGGGCAAGCGTGTGCGTCGC
GAGCAGTTCCTTATCGCCAAGAAGGATGAGGACGAGCAGTTGAGCCGCCC
TAAGGCATCCGCTGGTAGTCATTCAAAGACTCCCAAGTCATCCAGAAGGA
GTAGGATCTCTGGCGGACTGGTTATGCCGCCCATGCCACCAGTACCGCCC
ATGATTGTCGGACAAGGGGACGGCGCCGAACAGGACTTCGTGGCCATGCT
CACCGCCTGGTACATGTCCGGCTATTATACGGGCCTCTACCAGGGAAAGA
AAGAAGCCAGCACCACTAGCGGAAAGAAAAAGACACCCAAGAAGGCAAGC
TTTCTAGACCAT
BO07303.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:12:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smn-RB | 681 | CG16725-PB | 1..678 | 17..694 | 3390 | 100 | Plus |
| Smn-RA | 681 | CG16725-PA | 1..678 | 17..694 | 3390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smn-RB | 1086 | CG16725-RB | 298..979 | 13..694 | 3395 | 99.9 | Plus |
| Smn-RA | 879 | CG16725-RA | 91..772 | 13..694 | 3395 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16580505..16581186 | 694..13 | 3395 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:12:50 has no hits.
BO07303.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:07 Download gff for
BO07303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smn-RA | 1..681 | 17..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:11 Download gff for
BO07303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smn-RA | 52..741 | 10..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:42:30 Download gff for
BO07303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smn-RA | 95..772 | 17..696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:07 Download gff for
BO07303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smn-RA | 52..741 | 10..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:42 Download gff for
BO07303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smn-RA | 95..772 | 17..696 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:42 Download gff for
BO07303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16580503..16581182 | 17..696 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:42:30 Download gff for
BO07303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16573603..16574282 | 17..696 | 99 | | Minus |
BO07303.pep Sequence
Translation from 16 to 712
> BO07303.pep
MSDETNAAVWDDSLLVKTYDESVGLAREALARRLADSTNKREEENAAAAE
EEAGEISATGGATSPEPVSFKVGDYARATYVDGVDYEGAVVSINEEKGTC
VLRYLGYENEQEVLLVDLLPSWGKRVRREQFLIAKKDEDEQLSRPKASAG
SHSKTPKSSRRSRISGGLVMPPMPPVPPMIVGQGDGAEQDFVAMLTAWYM
SGYYTGLYQGKKEASTTSGKKKTPKKASFLDH
BO07303.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smn-PB | 226 | CG16725-PB | 1..226 | 1..226 | 1159 | 100 | Plus |
| Smn-PA | 226 | CG16725-PA | 1..226 | 1..226 | 1159 | 100 | Plus |
