Clone Sequence Records
BO07305.3prime Sequence
971 bp (874 high quality bases) assembled on 2005-12-04
> BO07305.3prime
ATGGTCTAGAAAGCTTGCCTCCTCCCTCTTCTTCTTCCTTTTGGGCTTAT
CCTCGCCATCGGAATCCTGGCTGGTGGCACTGGAATCGCTGGCACTGCTG
CTGCTCTCCTGCTTGCGCTTTTCGGGCGTCTTCTTGGCCAGCTTTTCGAT
GTACTGCTTCAGCTTGTCCGGCTGCGGACTGTATGCCCAGTGGATCAACT
GCAGGTGCAGGTCGGTGGGTGCTCCGGTCTCTGCATCGAAGAGCTTGGCC
TCCTCACTCTTAATCTGCTCCAGCAACTTGGACAGCTGACGATTGCGCAC
AATATCCCAGCTGGTCTTTTCATCCGTTTTGGGGAACATTGTGCGCAGGT
GCTTGTAGTTACCCTTGGCCTTGGAGCCGCCATAGGCTTCGAGAAACTCC
TTAGCCAACTCATCTTTGGGATCGGGCAGTTTGGTGACCACGGCGAGTGG
CAAGTATGCTCGATTGTCCTTGATACGATTCTCGGCCTCGAACTTTTCGA
GGAAATCCTCAAGTACCTGGACTCCCTCCTTTATGGCCGTGATCTTGTCC
TCGTTCTTGGTGCCTGACAGGACACGCTTGGAGCTGCCAATCAATCCCTT
GATGGCCAACCTCTGGTAGTCCGGATCTCGTTCCGCCAAAATGCTCAGCG
TTGCCTCCGCAGCAGCCTTGTCCTTGAATCCCAATCCCGGCACCGTCTCC
ACCTTGTCCTCGCTCTCTGTCTTGGCATTCTTGCTGGACGCCCCTCCGCC
ATTCTCCTCCAGCCACTTTTCAAAGACTCCAATGGCCGCATTGATGTTCT
TCAGCTTCTCCTCCGCCTTGGTCATTGTCAGGACTCTTTTGGCCCGGCCA
AGCAAACCGCGCACCGTCAGCTTGCGATACTGCATGTCGTGACTCTCCAG
CAGCTTTCACGTCTCTAACGCCTTCTCCATGTCCTTGAAGCCAAATTTCG
AATCTCCCTCTGCCATTGCTG
BO07305.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18410-PA | 1068 | CG18410-RA | 113..1065 | 971..19 | 4715 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:21:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ude-RD | 1517 | CG18410-RD | 68..1020 | 971..19 | 4735 | 99.8 | Minus |
Ude-RC | 1473 | CG18410-RC | 159..1111 | 971..19 | 4735 | 99.8 | Minus |
Ude-RB | 1382 | CG18410-RB | 68..1020 | 971..19 | 4735 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:21:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24797957..24798583 | 19..645 | 3135 | 100 | Plus |
3R | 32079331 | 3R | 24799127..24799307 | 644..824 | 905 | 100 | Plus |
3R | 32079331 | 3R | 24799364..24799510 | 825..971 | 705 | 98.6 | Plus |
Blast to na_te.dros performed 2015-02-04 20:21:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 3652..3822 | 132..297 | 123 | 58.5 | Plus |
BO07305.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:14:52 Download gff for
BO07305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18410-PA | 113..1068 | 16..971 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:55:43 Download gff for
BO07305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18410-PA | 113..1068 | 16..971 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:24:53 Download gff for
BO07305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ude-RB | 68..1020 | 19..971 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:48:53 Download gff for
BO07305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ude-RB | 68..1020 | 19..971 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:48:53 Download gff for
BO07305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24797957..24798581 | 19..643 | 100 | <- | Plus |
3R | 24799127..24799307 | 644..824 | 100 | <- | Plus |
3R | 24799364..24799510 | 825..971 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:24:53 Download gff for
BO07305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20623679..20624303 | 19..643 | 100 | <- | Plus |
arm_3R | 20624849..20625029 | 644..824 | 100 | <- | Plus |
arm_3R | 20625086..20625232 | 825..971 | 98 | | Plus |
BO07305.5prime Sequence
964 bp (801 high quality bases) assembled on 2005-12-04
> BO07305.5prime
GAAGTTATCAGTCGACATGATTAAGTGCCATATGCCGTCGAGTTGGAGAC
GGCTACGCAAAATCAGTCGTATTCTAGCGCTGACAGGAAGCAGACAGATA
CTCACCCAAGTATTAGCAACCAAAGGAGCAGCAATGGCAGAGGGAGATTC
GAAATTTGGCTTCAAGGACATGGAGAAGGCGTTAGAGACGTTGAAGCTGC
TGGAGAGTCACGACATGCAGTATCGCAAGCTGACGGTGCGCGGTTTGCTT
GGCCGGGCCAAAAGAGTCCTGACAATGACCAAGGCGGAGGAGAAGCTGAA
GAACATCAATGCGGCCATTGGAGTCTTTGAAAAGTGGCTGGAGGAGAATG
GCGGAGGGGCGTCCAGCAAGAATGCCAAGACAGAGAGCGAGGACAAGGTG
GAGACGGTGCCGGGATTGGGATTCAAGGACAAGGCTGCTGCGGAGGCAAC
GCTGAGCATTTTGGCGGAACGAGATCCGGACTACCAGAGGTTGGCCATCA
AGGGATTGATTGGCAGCTCCAAGCGTGTCCTGTCAGGCACCAAGAACGAG
GACAAGATCACGGCCATAAAGGAGGGAGTCCAGGTACTTGAGGATTTCCT
CGAAAAGTTCGAGGCCGAGAATCGTATCAAGGACAATCGAGCATACTTGC
CACTCGCCGTGGTCACCAAACTGCCCGATCCCAAAGATGAGTTGGCTAAG
GAGTTTCTCGAAGCCTATGGCGGCTCCAAGGCCAAGGGTAACTACAAGCA
CCTGCGCACAATGTTCCCCAAAACGGATGAAAAGACCAGCTGGGATATTG
TGCGNCATCGTCAGCTGGTCAAGTTGCTGGAGCAGATTAAGAGTGAGGAG
GCCNAGCTCTTCGATGCAGAGACCGGAGCACCCACCGACCCTGCACTGCA
GTTGATCCACTGGGCATACAGTCCGCAGCCGGACAAGCTGAAGCAGTACA
TCGAAAAAGCTGGC
BO07305.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:59:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18410-PA | 1068 | CG18410-RA | 1..874 | 17..890 | 4257 | 99.4 | Plus |
CG18410-PA | 1068 | CG18410-RA | 880..941 | 896..957 | 310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:40:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ude-RC | 1473 | CG18410-RC | 46..993 | 16..964 | 4608 | 99.2 | Plus |
Ude-RD | 1517 | CG18410-RD | 1..902 | 62..964 | 4378 | 99.1 | Plus |
Ude-RB | 1382 | CG18410-RB | 1..902 | 62..964 | 4378 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:40:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24798081..24798583 | 957..455 | 2373 | 98 | Minus |
3R | 32079331 | 3R | 24799364..24799623 | 275..16 | 1300 | 100 | Minus |
3R | 32079331 | 3R | 24799127..24799307 | 456..276 | 905 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 01:40:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 3667..3714 | 954..905 | 110 | 72 | Minus |
BO07305.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:14:53 Download gff for
BO07305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18410-PA | 1..947 | 17..964 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:55:44 Download gff for
BO07305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18410-PA | 1..947 | 17..964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:31:57 Download gff for
BO07305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ude-RC | 40..993 | 8..964 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:22:41 Download gff for
BO07305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ude-RC | 40..993 | 8..964 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:22:41 Download gff for
BO07305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24798075..24798581 | 457..964 | 98 | <- | Minus |
3R | 24799127..24799307 | 276..456 | 100 | <- | Minus |
3R | 24799364..24799629 | 8..275 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:31:57 Download gff for
BO07305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20623797..20624303 | 457..964 | 98 | <- | Minus |
arm_3R | 20624849..20625029 | 276..456 | 100 | <- | Minus |
arm_3R | 20625086..20625351 | 8..275 | 98 | | Minus |
BO07305.complete Sequence
1099 bp assembled on 2007-10-17
GenBank Submission: FJ630743
> BO07305.complete
GAAGTTATCAGTCGACATGATTAAGTGCCATATGCCGTCGAGTTGGAGAC
GGCTACGCAAAATCAGTCGTATTCTAGCGCTGACAGGAAGCAGACAGATA
CTCACCCAAGTATTAGCAACCAAAGGAGCAGCAATGGCAGAGGGAGATTC
GAAATTTGGCTTCAAGGACATGGAGAAGGCGTTAGAGACGTTGAAGCTGC
TGGAGAGTCACGACATGCAGTATCGCAAGCTGACGGTGCGCGGTTTGCTT
GGCCGGGCCAAAAGAGTCCTGACAATGACCAAGGCGGAGGAGAAGCTGAA
GAACATCAATGCGGCCATTGGAGTCTTTGAAAAGTGGCTGGAGGAGAATG
GCGGAGGGGCGTCCAGCAAGAATGCCAAGACAGAGAGCGAGGACAAGGTG
GAGACGGTGCCGGGATTGGGATTCAAGGACAAGGCTGCTGCGGAGGCAAC
GCTGAGCATTTTGGCGGAACGAGATCCGGACTACCAGAGGTTGGCCATCA
AGGGATTGATTGGCAGCTCCAAGCGTGTCCTGTCAGGCACCAAGAACGAG
GACAAGATCACGGCCATAAAGGAGGGAGTCCAGGTACTTGAGGATTTCCT
CGAAAAGTTCGAGGCCGAGAATCGTATCAAGGACAATCGAGCATACTTGC
CACTCGCCGTGGTCACCAAACTGCCCGATCCCAAAGATGAGTTGGCTAAG
GAGTTTCTCGAAGCCTATGGCGGCTCCAAGGCCAAGGGTAACTACAAGCA
CCTGCGCACAATGTTCCCCAAAACGGATGAAAAGACCAGCTGGGATATTG
TGCGCAATCGTCAGCTGTCCAAGTTGCTGGAGCAGATTAAGAGTGAGGAG
GCCAAGCTCTTCGATGCAGAGACCGGAGCACCCACCGACCTGCACCTGCA
GTTGATCCACTGGGCATACAGTCCGCAGCCGGACAAGCTGAAGCAGTACA
TCGAAAAGCTGGCCAAGAAGACGCCCGAAAAGCGCAAGCAGGAGAGCAGC
AGCAGTGCCAGCGATTCCAGTGCCACCAGCCAGGATTCCGATGGCGAGGA
TAAGCCCAAAAGGAAGAAGAAGAGGGAGGAGGCAAGCTTTCTAGACCAT
BO07305.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:40:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ude-RD | 951 | CG18410-PD | 1..948 | 134..1081 | 4740 | 100 | Plus |
Ude-RC | 951 | CG18410-PC | 1..948 | 134..1081 | 4740 | 100 | Plus |
Ude-RB | 951 | CG18410-PB | 1..948 | 134..1081 | 4740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ude-RC | 1473 | CG18410-RC | 46..1111 | 16..1081 | 5330 | 100 | Plus |
Ude-RD | 1517 | CG18410-RD | 1..1020 | 62..1081 | 5100 | 100 | Plus |
Ude-RB | 1382 | CG18410-RB | 1..1020 | 62..1081 | 5100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24797957..24798583 | 1081..455 | 3135 | 100 | Minus |
3R | 32079331 | 3R | 24799364..24799623 | 275..16 | 1300 | 100 | Minus |
3R | 32079331 | 3R | 24799127..24799307 | 456..276 | 905 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:40:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 3652..3822 | 968..803 | 123 | 58.5 | Minus |
BO07305.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:14 Download gff for
BO07305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18410-RA | 1..1068 | 17..1084 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:05:26 Download gff for
BO07305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18410-RA | 40..1111 | 8..1081 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:41:28 Download gff for
BO07305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ude-RC | 47..1111 | 17..1083 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:34:41 Download gff for
BO07305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18410-RA | 47..1111 | 17..1083 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:06 Download gff for
BO07305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ude-RC | 47..1111 | 17..1083 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:06 Download gff for
BO07305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24797954..24798581 | 457..1083 | 99 | <- | Minus |
3R | 24799127..24799307 | 276..456 | 100 | <- | Minus |
3R | 24799364..24799622 | 17..275 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:41:28 Download gff for
BO07305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20623676..20624303 | 457..1083 | 99 | <- | Minus |
arm_3R | 20624849..20625029 | 276..456 | 100 | <- | Minus |
arm_3R | 20625086..20625344 | 17..275 | 100 | | Minus |
BO07305.pep Sequence
Translation from 16 to 1099
> BO07305.pep
MIKCHMPSSWRRLRKISRILALTGSRQILTQVLATKGAAMAEGDSKFGFK
DMEKALETLKLLESHDMQYRKLTVRGLLGRAKRVLTMTKAEEKLKNINAA
IGVFEKWLEENGGGASSKNAKTESEDKVETVPGLGFKDKAAAEATLSILA
ERDPDYQRLAIKGLIGSSKRVLSGTKNEDKITAIKEGVQVLEDFLEKFEA
ENRIKDNRAYLPLAVVTKLPDPKDELAKEFLEAYGGSKAKGNYKHLRTMF
PKTDEKTSWDIVRNRQLSKLLEQIKSEEAKLFDAETGAPTDLHLQLIHWA
YSPQPDKLKQYIEKLAKKTPEKRKQESSSSASDSSATSQDSDGEDKPKRK
KKREEASFLDH
BO07305.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:44:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ude-PD | 316 | CG18410-PD | 1..316 | 40..355 | 1597 | 100 | Plus |
Ude-PC | 316 | CG18410-PC | 1..316 | 40..355 | 1597 | 100 | Plus |
Ude-PB | 316 | CG18410-PB | 1..316 | 40..355 | 1597 | 100 | Plus |