Clone BO07309 Report

Search the DGRC for BO07309

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:73
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptPdk-RA
Protein status:BO07309.pep: validated full length
Sequenced Size:1273

Clone Sequence Records

BO07309.3prime Sequence

959 bp (883 high quality bases) assembled on 2005-12-04

> BO07309.3prime
ATGGTCTAGAAAGCTTGCCTGGTTGACAGCGCTCGTCTTCTTCTTTTTAG
CGTATTTTACCTGATTGGACCAGTCACCCGTGGGCACGGTGGCGCGATAG
AACTTTGAGCTTGTCTTGTTGAAGATCGGCAGCAATTCGTTTGCTTCGTC
GGACAGAGCCTTTAGATAGATGATTGCATCTGTTCCGAATCCTTCGCAGG
AGAGCAGCACAATGTCGCCATGGAAATAGCGGGCGTAAAGCCTTGAGATC
GGCAGACCGTATCCATAGCCCGCTAATGGCACCGTATGCAGATCCGACTT
CGAGGGCTGCGGCGCTGTGCTGTACATATACTTGAAGAGCTGATCGGTCT
GGGAGCGGGGAATGCCGCCTCCCTGGTCAGAAATTTTCACACAGATGTCC
TCCTTGCCCTTGCAAATGGCTACTTTCAAGGGGGGCAATGTGTCATTGTT
GTCATGGCCATGGTGCTCTACAACAGCTCGCATAGAGTTCTTGAAGAGCT
CGAAAAGCATGTAGTACAGGTGCGAGGGCACGTAAACGGTGCGGATGGGC
AGGTTGTCTCCAGGCTCGCTGCTGTGCTGCTGGATCTCCAATGCCGGACT
GGTCAGGTAGTACTGATCGCATAGGAATCGCGCATTCTCGTAAGCATCGC
GAACCACATCCGACAGATCACAGGCGGGATCCAGGCAACCAATATGGCGG
CCACCCGCATGTGGATTTCCGCCAAAGAGAAGGGTGTGCTGATTTATCAG
CATTCGAATGCTGATGCGAGACATGTAGAGCCTGTCGAGAAAGTACTGAA
TGGAACTCTCTGTAGGCGCATCCACCTGGCCGCCCTCGTTCTCCTTCATT
TCGATCACACCCTGGGCCATCGTTTGCACCACATCGTTGTGCCGATTCCT
AATGAGATCCAAATCGGCCACAAACTTTTGCAGATTGTCGTGGGTGGGCT
CTGCTTTCT

BO07309.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:00:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8808-PA 1242 Pdk-RA 299..1239 959..19 4705 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:13:32
Subject Length Description Subject Range Query Range Score Percent Strand
Pdk-RC 2732 CG8808-RC 1110..2050 959..19 4705 100 Minus
Pdk-RA 2080 CG8808-RA 1110..2050 959..19 4705 100 Minus
Pdk-RD 2440 CG8808-RD 1110..2008 959..61 4495 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:13:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9432490..9433065 734..159 2880 100 Minus
2R 25286936 2R 9432235..9432425 925..735 955 100 Minus
2R 25286936 2R 9433128..9433270 161..19 715 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:13:28 has no hits.

BO07309.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:15:00 Download gff for BO07309.3prime
Subject Subject Range Query Range Percent Splice Strand
Pdk-PA 299..1242 18..959 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:55:53 Download gff for BO07309.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8808-PA 299..1242 18..959 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:42:51 Download gff for BO07309.3prime
Subject Subject Range Query Range Percent Splice Strand
Pdk-RA 1110..2050 19..959 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:08:41 Download gff for BO07309.3prime
Subject Subject Range Query Range Percent Splice Strand
Pdk-RA 1110..2050 19..959 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:08:41 Download gff for BO07309.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9432145..9432178 926..959 100 -> Minus
2R 9432235..9432425 735..925 100 -> Minus
2R 9432490..9433064 160..734 100 -> Minus
2R 9433130..9433270 19..159 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:42:51 Download gff for BO07309.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5319650..5319683 926..959 100 -> Minus
arm_2R 5319740..5319930 735..925 100 -> Minus
arm_2R 5319995..5320569 160..734 100 -> Minus
arm_2R 5320635..5320775 19..159 100   Minus

BO07309.5prime Sequence

956 bp (812 high quality bases) assembled on 2005-12-04

> BO07309.5prime
GAAGTTATCAGTCGACATGCGCCTGTTTCCAGTCCGATTCTCAGCCGCCT
CCTCGTCGATGGCGAGTTTGGCCAAAATGCTCGACTTTTACTCGGGCTTC
AACCCCTCGCCCCTCTCGATAAAGCAGTTCATGGACTTTGGTCAGAATGC
CTGCGAGAAGAAATCGTACATATTCCTGCGCAAGGAACTGCCTGTTCGAC
TGGCGAATATCATGAAGGAGATCGCCCTTCTGCCGGATAACCTGTTGCAC
ACCAGATCCGTAAGCGAAGTTAGTTCCTGGTATGTCAAGAGTTTCGAGGA
TGTGCTGGTGTACGAGAAAGCAGAGCCCACCCACGACAATCTGCAAAAGT
TTGTGGCCGATTTGGATCTCATTAGGAATCGGCACAACGATGTGGTGCAA
ACGATGGCCCAGGGTGTGATCGAAATGAAGGAGAACGAGGGCGGCCAGGT
GGATGCGCCTACAGAGAGTTCCATTCAGTACTTTCTCGACAGGCTCTACA
TGTCTCGCATCAGCATTCGAATGCTGATAAATCAGCACACCCTTCTCTTT
GGCGGAAATCCACATGCGGGTGGCCGCCATATTGGTTGCCTGGATCCCGC
CTGTGATCTGTCGGATGTGGTTCGCGATGCTTACGAGAATGCGCGATTCC
TATGCGATCAGTACTACCTGACCAGTCCGGCATTGGAGATCCAGCAGCAC
AGCAGCGAGCCTGGAGACAACCTGCCCATCCGCACCGTTTACGTGCCCTC
GCACCTGTACTACATGCTTTTCGAGCTCTTCAAGAACTCTATGCGAGCTG
TTGTAGAGCACCATGGCCATGACAACAATGACACATTGCCCCCCTTGAAA
GTAGCCATTTTGCAGGGCAAGGAGGACATCTGTGTGAAAATTTCTGACCA
GGGAGGCGGCATTCCCCGCTCCCAGACCGATCAGCTCTTCAAGTATATGT
ACAGCA

BO07309.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:00:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8808-PA 1242 Pdk-RA 1..844 17..860 4220 100 Plus
CG8808-PA 1242 Pdk-RA 848..940 864..956 465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:22:09
Subject Length Description Subject Range Query Range Score Percent Strand
Pdk-RC 2732 CG8808-RC 810..1751 15..956 4665 99.8 Plus
Pdk-RD 2440 CG8808-RD 810..1751 15..956 4665 99.8 Plus
Pdk-RB 2293 CG8808-RB 810..1751 15..956 4665 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9432490..9432906 540..956 2040 99.3 Plus
2R 25286936 2R 9431970..9432180 140..350 1055 100 Plus
2R 25286936 2R 9432235..9432425 349..539 955 100 Plus
2R 25286936 2R 9427248..9427375 15..142 640 100 Plus
Blast to na_te.dros performed on 2015-02-04 20:22:07 has no hits.

BO07309.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:15:01 Download gff for BO07309.5prime
Subject Subject Range Query Range Percent Splice Strand
Pdk-PA 1..939 17..955 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:55:55 Download gff for BO07309.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8808-PA 1..939 17..955 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:24:55 Download gff for BO07309.5prime
Subject Subject Range Query Range Percent Splice Strand
Pdk-RB 798..1750 2..955 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:48:54 Download gff for BO07309.5prime
Subject Subject Range Query Range Percent Splice Strand
Pdk-RB 798..1750 2..955 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:48:54 Download gff for BO07309.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9427236..9427373 2..140 96 -> Plus
2R 9431971..9432178 141..348 100 -> Plus
2R 9432235..9432425 349..539 100 -> Plus
2R 9432490..9432905 540..955 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:24:55 Download gff for BO07309.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5314741..5314878 2..140 96 -> Plus
arm_2R 5319476..5319683 141..348 100 -> Plus
arm_2R 5319740..5319930 349..539 100 -> Plus
arm_2R 5319995..5320410 540..955 99   Plus

BO07309.complete Sequence

1273 bp (1273 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630746

> BO07309.complete
GAAGTTATCAGTCGACATGCGCCTGTTTCCAGTCCGATTCTCAGCCGCCT
CCTCGTCGATGGCGAGTTTGGCCAAAATGCTCGACTTTTACTCGGGCTTC
AACCCCTCGCCCCTCTCGATAAAGCAGTTCATGGACTTTGGTCAGAATGC
CTGCGAGAAGAAATCGTACATATTCCTGCGCAAGGAACTGCCTGTTCGAC
TGGCGAATATCATGAAGGAGATCGCCCTTCTGCCGGATAACCTGTTGCAC
ACCAGATCCGTAAGCGAAGTTAGTTCCTGGTATGTCAAGAGTTTCGAGGA
TGTGCTGGTGTACGAGAAAGCAGAGCCCACCCACGACAATCTGCAAAAGT
TTGTGGCCGATTTGGATCTCATTAGGAATCGGCACAACGATGTGGTGCAA
ACGATGGCCCAGGGTGTGATCGAAATGAAGGAGAACGAGGGCGGCCAGGT
GGATGCGCCTACAGAGAGTTCCATTCAGTACTTTCTCGACAGGCTCTACA
TGTCTCGCATCAGCATTCGAATGCTGATAAATCAGCACACCCTTCTCTTT
GGCGGAAATCCACATGCGGGTGGCCGCCATATTGGTTGCCTGGATCCCGC
CTGTGATCTGTCGGATGTGGTTCGCGATGCTTACGAGAATGCGCGATTCC
TATGCGATCAGTACTACCTGACCAGTCCGGCATTGGAGATCCAGCAGCAC
AGCAGCGAGCCTGGAGACAACCTGCCCATCCGCACCGTTTACGTGCCCTC
GCACCTGTACTACATGCTTTTCGAGCTCTTCAAGAACTCTATGCGAGCTG
TTGTAGAGCACCATGGCCATGACAACAATGACACATTGCCCCCCTTGAAA
GTAGCCATTTGCAAGGGCAAGGAGGACATCTGTGTGAAAATTTCTGACCA
GGGAGGCGGCATTCCCCGCTCCCAGACCGATCAGCTCTTCAAGTATATGT
ACAGCACAGCGCCGCAGCCCTCGAAGTCGGATCTGCATACGGTGCCATTA
GCGGGCTATGGATACGGTCTGCCGATCTCAAGGCTTTACGCCCGCTATTT
CCATGGCGACATTGTGCTGCTCTCCTGCGAAGGATTCGGAACAGATGCAA
TCATCTATCTAAAGGCTCTGTCCGACGAAGCAAACGAATTGCTGCCGATC
TTCAACAAGACAAGCTCAAAGTTCTATCGCGCCACCGTGCCCACGGGTGA
CTGGTCCAATCAGGTAAAATACGCTAAAAAGAAGAAGACGAGCGCTGTCA
ACCAGGCAAGCTTTCTAGACCAT

BO07309.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
Pdk-RC 1242 CG8808-PC 1..1239 17..1255 6195 100 Plus
Pdk-RA 1242 CG8808-PA 1..1239 17..1255 6195 100 Plus
Pdk-RD 1248 CG8808-PD 1..1197 17..1213 5985 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:46:21
Subject Length Description Subject Range Query Range Score Percent Strand
Pdk-RC 2732 CG8808-RC 810..2050 15..1255 6205 100 Plus
Pdk-RA 2080 CG8808-RA 810..2050 15..1255 6205 100 Plus
Pdk-RD 2440 CG8808-RD 810..2008 15..1213 5995 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:46:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9432490..9433065 540..1115 2880 100 Plus
2R 25286936 2R 9431970..9432180 140..350 1055 100 Plus
2R 25286936 2R 9432235..9432425 349..539 955 100 Plus
2R 25286936 2R 9433128..9433270 1113..1255 715 100 Plus
2R 25286936 2R 9427248..9427375 15..142 640 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:46:19 has no hits.

BO07309.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:08 Download gff for BO07309.complete
Subject Subject Range Query Range Percent Splice Strand
Pdk-RA 1..1242 17..1256 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:13 Download gff for BO07309.complete
Subject Subject Range Query Range Percent Splice Strand
Pdk-RA 795..2047 2..1255 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:35 Download gff for BO07309.complete
Subject Subject Range Query Range Percent Splice Strand
Pdk-RA 812..2050 17..1257 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:08 Download gff for BO07309.complete
Subject Subject Range Query Range Percent Splice Strand
Pdk-RA 795..2047 2..1255 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:54 Download gff for BO07309.complete
Subject Subject Range Query Range Percent Splice Strand
Pdk-RA 812..2050 17..1257 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:54 Download gff for BO07309.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9431971..9432178 141..348 100 -> Plus
2R 9432235..9432425 349..539 100 -> Plus
2R 9427250..9427373 17..140 100 -> Plus
2R 9432490..9433064 540..1114 100 -> Plus
2R 9433130..9433270 1115..1257 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:35 Download gff for BO07309.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5314755..5314878 17..140 100 -> Plus
arm_2R 5319476..5319683 141..348 100 -> Plus
arm_2R 5319740..5319930 349..539 100 -> Plus
arm_2R 5319995..5320569 540..1114 100 -> Plus
arm_2R 5320635..5320775 1115..1257 98   Plus

BO07309.pep Sequence

Translation from 16 to 1273

> BO07309.pep
MRLFPVRFSAASSSMASLAKMLDFYSGFNPSPLSIKQFMDFGQNACEKKS
YIFLRKELPVRLANIMKEIALLPDNLLHTRSVSEVSSWYVKSFEDVLVYE
KAEPTHDNLQKFVADLDLIRNRHNDVVQTMAQGVIEMKENEGGQVDAPTE
SSIQYFLDRLYMSRISIRMLINQHTLLFGGNPHAGGRHIGCLDPACDLSD
VVRDAYENARFLCDQYYLTSPALEIQQHSSEPGDNLPIRTVYVPSHLYYM
LFELFKNSMRAVVEHHGHDNNDTLPPLKVAICKGKEDICVKISDQGGGIP
RSQTDQLFKYMYSTAPQPSKSDLHTVPLAGYGYGLPISRLYARYFHGDIV
LLSCEGFGTDAIIYLKALSDEANELLPIFNKTSSKFYRATVPTGDWSNQV
KYAKKKKTSAVNQASFLDH

BO07309.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:44
Subject Length Description Subject Range Query Range Score Percent Strand
Pdk-PC 413 CG8808-PC 1..413 1..413 2165 100 Plus
Pdk-PA 413 CG8808-PA 1..413 1..413 2165 100 Plus
Pdk-PB 422 CG8808-PB 1..410 1..410 2100 97.8 Plus
Pdk-PD 415 CG8808-PD 1..399 1..399 2097 100 Plus