Clone Sequence Records
BO07309.3prime Sequence
959 bp (883 high quality bases) assembled on 2005-12-04
> BO07309.3prime
ATGGTCTAGAAAGCTTGCCTGGTTGACAGCGCTCGTCTTCTTCTTTTTAG
CGTATTTTACCTGATTGGACCAGTCACCCGTGGGCACGGTGGCGCGATAG
AACTTTGAGCTTGTCTTGTTGAAGATCGGCAGCAATTCGTTTGCTTCGTC
GGACAGAGCCTTTAGATAGATGATTGCATCTGTTCCGAATCCTTCGCAGG
AGAGCAGCACAATGTCGCCATGGAAATAGCGGGCGTAAAGCCTTGAGATC
GGCAGACCGTATCCATAGCCCGCTAATGGCACCGTATGCAGATCCGACTT
CGAGGGCTGCGGCGCTGTGCTGTACATATACTTGAAGAGCTGATCGGTCT
GGGAGCGGGGAATGCCGCCTCCCTGGTCAGAAATTTTCACACAGATGTCC
TCCTTGCCCTTGCAAATGGCTACTTTCAAGGGGGGCAATGTGTCATTGTT
GTCATGGCCATGGTGCTCTACAACAGCTCGCATAGAGTTCTTGAAGAGCT
CGAAAAGCATGTAGTACAGGTGCGAGGGCACGTAAACGGTGCGGATGGGC
AGGTTGTCTCCAGGCTCGCTGCTGTGCTGCTGGATCTCCAATGCCGGACT
GGTCAGGTAGTACTGATCGCATAGGAATCGCGCATTCTCGTAAGCATCGC
GAACCACATCCGACAGATCACAGGCGGGATCCAGGCAACCAATATGGCGG
CCACCCGCATGTGGATTTCCGCCAAAGAGAAGGGTGTGCTGATTTATCAG
CATTCGAATGCTGATGCGAGACATGTAGAGCCTGTCGAGAAAGTACTGAA
TGGAACTCTCTGTAGGCGCATCCACCTGGCCGCCCTCGTTCTCCTTCATT
TCGATCACACCCTGGGCCATCGTTTGCACCACATCGTTGTGCCGATTCCT
AATGAGATCCAAATCGGCCACAAACTTTTGCAGATTGTCGTGGGTGGGCT
CTGCTTTCT
BO07309.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:00:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8808-PA | 1242 | Pdk-RA | 299..1239 | 959..19 | 4705 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:13:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pdk-RC | 2732 | CG8808-RC | 1110..2050 | 959..19 | 4705 | 100 | Minus |
Pdk-RA | 2080 | CG8808-RA | 1110..2050 | 959..19 | 4705 | 100 | Minus |
Pdk-RD | 2440 | CG8808-RD | 1110..2008 | 959..61 | 4495 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:13:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9432490..9433065 | 734..159 | 2880 | 100 | Minus |
2R | 25286936 | 2R | 9432235..9432425 | 925..735 | 955 | 100 | Minus |
2R | 25286936 | 2R | 9433128..9433270 | 161..19 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:13:28 has no hits.
BO07309.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:15:00 Download gff for
BO07309.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdk-PA | 299..1242 | 18..959 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:55:53 Download gff for
BO07309.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8808-PA | 299..1242 | 18..959 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:42:51 Download gff for
BO07309.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdk-RA | 1110..2050 | 19..959 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:08:41 Download gff for
BO07309.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdk-RA | 1110..2050 | 19..959 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:08:41 Download gff for
BO07309.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9432145..9432178 | 926..959 | 100 | -> | Minus |
2R | 9432235..9432425 | 735..925 | 100 | -> | Minus |
2R | 9432490..9433064 | 160..734 | 100 | -> | Minus |
2R | 9433130..9433270 | 19..159 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:42:51 Download gff for
BO07309.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5319650..5319683 | 926..959 | 100 | -> | Minus |
arm_2R | 5319740..5319930 | 735..925 | 100 | -> | Minus |
arm_2R | 5319995..5320569 | 160..734 | 100 | -> | Minus |
arm_2R | 5320635..5320775 | 19..159 | 100 | | Minus |
BO07309.5prime Sequence
956 bp (812 high quality bases) assembled on 2005-12-04
> BO07309.5prime
GAAGTTATCAGTCGACATGCGCCTGTTTCCAGTCCGATTCTCAGCCGCCT
CCTCGTCGATGGCGAGTTTGGCCAAAATGCTCGACTTTTACTCGGGCTTC
AACCCCTCGCCCCTCTCGATAAAGCAGTTCATGGACTTTGGTCAGAATGC
CTGCGAGAAGAAATCGTACATATTCCTGCGCAAGGAACTGCCTGTTCGAC
TGGCGAATATCATGAAGGAGATCGCCCTTCTGCCGGATAACCTGTTGCAC
ACCAGATCCGTAAGCGAAGTTAGTTCCTGGTATGTCAAGAGTTTCGAGGA
TGTGCTGGTGTACGAGAAAGCAGAGCCCACCCACGACAATCTGCAAAAGT
TTGTGGCCGATTTGGATCTCATTAGGAATCGGCACAACGATGTGGTGCAA
ACGATGGCCCAGGGTGTGATCGAAATGAAGGAGAACGAGGGCGGCCAGGT
GGATGCGCCTACAGAGAGTTCCATTCAGTACTTTCTCGACAGGCTCTACA
TGTCTCGCATCAGCATTCGAATGCTGATAAATCAGCACACCCTTCTCTTT
GGCGGAAATCCACATGCGGGTGGCCGCCATATTGGTTGCCTGGATCCCGC
CTGTGATCTGTCGGATGTGGTTCGCGATGCTTACGAGAATGCGCGATTCC
TATGCGATCAGTACTACCTGACCAGTCCGGCATTGGAGATCCAGCAGCAC
AGCAGCGAGCCTGGAGACAACCTGCCCATCCGCACCGTTTACGTGCCCTC
GCACCTGTACTACATGCTTTTCGAGCTCTTCAAGAACTCTATGCGAGCTG
TTGTAGAGCACCATGGCCATGACAACAATGACACATTGCCCCCCTTGAAA
GTAGCCATTTTGCAGGGCAAGGAGGACATCTGTGTGAAAATTTCTGACCA
GGGAGGCGGCATTCCCCGCTCCCAGACCGATCAGCTCTTCAAGTATATGT
ACAGCA
BO07309.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:00:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8808-PA | 1242 | Pdk-RA | 1..844 | 17..860 | 4220 | 100 | Plus |
CG8808-PA | 1242 | Pdk-RA | 848..940 | 864..956 | 465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:22:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pdk-RC | 2732 | CG8808-RC | 810..1751 | 15..956 | 4665 | 99.8 | Plus |
Pdk-RD | 2440 | CG8808-RD | 810..1751 | 15..956 | 4665 | 99.8 | Plus |
Pdk-RB | 2293 | CG8808-RB | 810..1751 | 15..956 | 4665 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:22:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9432490..9432906 | 540..956 | 2040 | 99.3 | Plus |
2R | 25286936 | 2R | 9431970..9432180 | 140..350 | 1055 | 100 | Plus |
2R | 25286936 | 2R | 9432235..9432425 | 349..539 | 955 | 100 | Plus |
2R | 25286936 | 2R | 9427248..9427375 | 15..142 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:22:07 has no hits.
BO07309.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:15:01 Download gff for
BO07309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdk-PA | 1..939 | 17..955 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:55:55 Download gff for
BO07309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8808-PA | 1..939 | 17..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:24:55 Download gff for
BO07309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdk-RB | 798..1750 | 2..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:48:54 Download gff for
BO07309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdk-RB | 798..1750 | 2..955 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:48:54 Download gff for
BO07309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9427236..9427373 | 2..140 | 96 | -> | Plus |
2R | 9431971..9432178 | 141..348 | 100 | -> | Plus |
2R | 9432235..9432425 | 349..539 | 100 | -> | Plus |
2R | 9432490..9432905 | 540..955 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:24:55 Download gff for
BO07309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5314741..5314878 | 2..140 | 96 | -> | Plus |
arm_2R | 5319476..5319683 | 141..348 | 100 | -> | Plus |
arm_2R | 5319740..5319930 | 349..539 | 100 | -> | Plus |
arm_2R | 5319995..5320410 | 540..955 | 99 | | Plus |
BO07309.complete Sequence
1273 bp (1273 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630746
> BO07309.complete
GAAGTTATCAGTCGACATGCGCCTGTTTCCAGTCCGATTCTCAGCCGCCT
CCTCGTCGATGGCGAGTTTGGCCAAAATGCTCGACTTTTACTCGGGCTTC
AACCCCTCGCCCCTCTCGATAAAGCAGTTCATGGACTTTGGTCAGAATGC
CTGCGAGAAGAAATCGTACATATTCCTGCGCAAGGAACTGCCTGTTCGAC
TGGCGAATATCATGAAGGAGATCGCCCTTCTGCCGGATAACCTGTTGCAC
ACCAGATCCGTAAGCGAAGTTAGTTCCTGGTATGTCAAGAGTTTCGAGGA
TGTGCTGGTGTACGAGAAAGCAGAGCCCACCCACGACAATCTGCAAAAGT
TTGTGGCCGATTTGGATCTCATTAGGAATCGGCACAACGATGTGGTGCAA
ACGATGGCCCAGGGTGTGATCGAAATGAAGGAGAACGAGGGCGGCCAGGT
GGATGCGCCTACAGAGAGTTCCATTCAGTACTTTCTCGACAGGCTCTACA
TGTCTCGCATCAGCATTCGAATGCTGATAAATCAGCACACCCTTCTCTTT
GGCGGAAATCCACATGCGGGTGGCCGCCATATTGGTTGCCTGGATCCCGC
CTGTGATCTGTCGGATGTGGTTCGCGATGCTTACGAGAATGCGCGATTCC
TATGCGATCAGTACTACCTGACCAGTCCGGCATTGGAGATCCAGCAGCAC
AGCAGCGAGCCTGGAGACAACCTGCCCATCCGCACCGTTTACGTGCCCTC
GCACCTGTACTACATGCTTTTCGAGCTCTTCAAGAACTCTATGCGAGCTG
TTGTAGAGCACCATGGCCATGACAACAATGACACATTGCCCCCCTTGAAA
GTAGCCATTTGCAAGGGCAAGGAGGACATCTGTGTGAAAATTTCTGACCA
GGGAGGCGGCATTCCCCGCTCCCAGACCGATCAGCTCTTCAAGTATATGT
ACAGCACAGCGCCGCAGCCCTCGAAGTCGGATCTGCATACGGTGCCATTA
GCGGGCTATGGATACGGTCTGCCGATCTCAAGGCTTTACGCCCGCTATTT
CCATGGCGACATTGTGCTGCTCTCCTGCGAAGGATTCGGAACAGATGCAA
TCATCTATCTAAAGGCTCTGTCCGACGAAGCAAACGAATTGCTGCCGATC
TTCAACAAGACAAGCTCAAAGTTCTATCGCGCCACCGTGCCCACGGGTGA
CTGGTCCAATCAGGTAAAATACGCTAAAAAGAAGAAGACGAGCGCTGTCA
ACCAGGCAAGCTTTCTAGACCAT
BO07309.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:46:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pdk-RC | 1242 | CG8808-PC | 1..1239 | 17..1255 | 6195 | 100 | Plus |
Pdk-RA | 1242 | CG8808-PA | 1..1239 | 17..1255 | 6195 | 100 | Plus |
Pdk-RD | 1248 | CG8808-PD | 1..1197 | 17..1213 | 5985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:46:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pdk-RC | 2732 | CG8808-RC | 810..2050 | 15..1255 | 6205 | 100 | Plus |
Pdk-RA | 2080 | CG8808-RA | 810..2050 | 15..1255 | 6205 | 100 | Plus |
Pdk-RD | 2440 | CG8808-RD | 810..2008 | 15..1213 | 5995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:46:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9432490..9433065 | 540..1115 | 2880 | 100 | Plus |
2R | 25286936 | 2R | 9431970..9432180 | 140..350 | 1055 | 100 | Plus |
2R | 25286936 | 2R | 9432235..9432425 | 349..539 | 955 | 100 | Plus |
2R | 25286936 | 2R | 9433128..9433270 | 1113..1255 | 715 | 100 | Plus |
2R | 25286936 | 2R | 9427248..9427375 | 15..142 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:46:19 has no hits.
BO07309.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:08 Download gff for
BO07309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdk-RA | 1..1242 | 17..1256 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:13 Download gff for
BO07309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdk-RA | 795..2047 | 2..1255 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:35 Download gff for
BO07309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdk-RA | 812..2050 | 17..1257 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:08 Download gff for
BO07309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdk-RA | 795..2047 | 2..1255 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:54 Download gff for
BO07309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdk-RA | 812..2050 | 17..1257 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:54 Download gff for
BO07309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9431971..9432178 | 141..348 | 100 | -> | Plus |
2R | 9432235..9432425 | 349..539 | 100 | -> | Plus |
2R | 9427250..9427373 | 17..140 | 100 | -> | Plus |
2R | 9432490..9433064 | 540..1114 | 100 | -> | Plus |
2R | 9433130..9433270 | 1115..1257 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:35 Download gff for
BO07309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5314755..5314878 | 17..140 | 100 | -> | Plus |
arm_2R | 5319476..5319683 | 141..348 | 100 | -> | Plus |
arm_2R | 5319740..5319930 | 349..539 | 100 | -> | Plus |
arm_2R | 5319995..5320569 | 540..1114 | 100 | -> | Plus |
arm_2R | 5320635..5320775 | 1115..1257 | 98 | | Plus |
BO07309.pep Sequence
Translation from 16 to 1273
> BO07309.pep
MRLFPVRFSAASSSMASLAKMLDFYSGFNPSPLSIKQFMDFGQNACEKKS
YIFLRKELPVRLANIMKEIALLPDNLLHTRSVSEVSSWYVKSFEDVLVYE
KAEPTHDNLQKFVADLDLIRNRHNDVVQTMAQGVIEMKENEGGQVDAPTE
SSIQYFLDRLYMSRISIRMLINQHTLLFGGNPHAGGRHIGCLDPACDLSD
VVRDAYENARFLCDQYYLTSPALEIQQHSSEPGDNLPIRTVYVPSHLYYM
LFELFKNSMRAVVEHHGHDNNDTLPPLKVAICKGKEDICVKISDQGGGIP
RSQTDQLFKYMYSTAPQPSKSDLHTVPLAGYGYGLPISRLYARYFHGDIV
LLSCEGFGTDAIIYLKALSDEANELLPIFNKTSSKFYRATVPTGDWSNQV
KYAKKKKTSAVNQASFLDH
BO07309.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pdk-PC | 413 | CG8808-PC | 1..413 | 1..413 | 2165 | 100 | Plus |
Pdk-PA | 413 | CG8808-PA | 1..413 | 1..413 | 2165 | 100 | Plus |
Pdk-PB | 422 | CG8808-PB | 1..410 | 1..410 | 2100 | 97.8 | Plus |
Pdk-PD | 415 | CG8808-PD | 1..399 | 1..399 | 2097 | 100 | Plus |