Clone BO07312 Report

Search the DGRC for BO07312

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:73
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptHdac3-RA
Protein status:BO07312.pep: validated full length
Sequenced Size:1348

Clone Sequence Records

BO07312.3prime Sequence

893 bp (850 high quality bases) assembled on 2005-12-04

> BO07312.3prime
ATGGTCTAGAAAGCTTGCACTTTCTGCCGAATCGGGCTTGTCTTGGTCCT
GATCGCCGTCGTAGAACTCGTTCTTAGCATCAACCAGCTTGTCCTCATCG
GCTACGGATATTCGCACGTCGGGATCACTCGCCTCCTCCCGGTTGCTGCG
CAGCTCCTCCAAGTCCACATCAGGCGGGGTCTGCACCATTTGGACGCTGG
GCGAGTGCTGGCACATCTTAAGGTTTTCATACACATGCTTAACGATGAGT
TCAAGATACTGCTTTGAGTTAGCATTATCTTGGCGTGAGTTAATCTCTGG
ATGGAGTGTAAAGTCGGGGGCGAAAAAGTCGTAATACTCGGTGGCGGGTA
GGTCATTTTCAATGTCTTGGTCCACCAGCAGCGAGGTCTCGTGCGTCCAG
CAGCGGGCCACGTTCCGTAAGGTGTAGCCACCGCCTCCGACCACCAATGT
GGGTACGTTCAGTTCCTTCACAAATTTGACACACTCACCATGTCCCTTGG
TGCTCAGGGAGAAGCAACCTAGTCGATCTCCAGCTAGTGAATCCGCGCCA
CACTGCAAAACGATAGCCGTGGGCCGGTAGAAGTCCATAATGGCAGAAAT
TATGGGTTTGAACACCTGAAAATAGCTCTGGTCATCAATGCCCTCCTTTA
GCGGCACATTAACGCTGTAGTATCGTCCCGATTCGGCGCCTATCTCGTAC
ATGTCTCCCGTGCCGGGAAAAAAGTAGTTTCCGTATTTGTGGAACGAAGC
CGTCATCACTCGGTCCGTAAGGTAGAACGCCTCCTGCACCCCGTCGCCGT
GGTGCACATCGATGTCGATGTAGAGCACCCGAGGATGGTACTTAAGCAGC
TCCAGAATGCCGATGACGATGTCATTCACGTAGCAGAATCCGC

BO07312.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:00:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG2128-PA 1317 Hdac3-RA 440..1314 893..19 4375 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:29:31
Subject Length Description Subject Range Query Range Score Percent Strand
Hdac3-RA 1660 CG2128-RA 717..1591 893..19 4375 100 Minus
CG45100-RA 1660 CG45100-RA 717..1591 893..19 4375 100 Minus
Rpd3-RA 2124 CG7471-RA 648..806 888..730 255 78.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5472879..5473753 19..893 4375 100 Plus
3L 28110227 3L 4627896..4628054 888..730 255 77.4 Minus
Blast to na_te.dros performed on 2015-02-10 17:29:27 has no hits.

BO07312.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:15:04 Download gff for BO07312.3prime
Subject Subject Range Query Range Percent Splice Strand
Hdac3-PA 440..1317 18..893 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:55:59 Download gff for BO07312.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2128-PA 440..1317 18..893 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:05:52 Download gff for BO07312.3prime
Subject Subject Range Query Range Percent Splice Strand
Hdac3-RA 717..1591 19..893 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:00 Download gff for BO07312.3prime
Subject Subject Range Query Range Percent Splice Strand
CG45100-RA 717..1591 19..893 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:00 Download gff for BO07312.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5472879..5473753 19..893 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:05:52 Download gff for BO07312.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1298601..1299475 19..893 100   Plus

BO07312.5prime Sequence

848 bp (803 high quality bases) assembled on 2005-12-04

> BO07312.5prime
GAAGTTATCAGTCGACATGACGGACCGTAGGGTGTCGTACTTCTACAACG
CGGACGTGGGCAACTTCCACTATGGAGCCGGGCATCCCATGAAGCCGCAA
CGCCTGGCGGTCACTCACAGCCTGGTAATGAACTACGGACTGCACAAGAA
AATGAAGATCTACAGGCCGTACAAGGCCAGTGCGCAGGACATGCTCCGCT
TCCACAGCGACGAGTACATCGCCTACTTACAGCAGGTGACTCCACAAAAC
ATTCAGTGCAATTCCGTGGCCTATACGAAGTACCTGGCGCACTTCAGCGT
AGGCGAGGACTGTCCCGTGTTCGATGGCCTCTTCGACTTCTGTGCAATGT
ACACGGGTGCCTCGCTGGAGGGAGCCCAGAAGCTGAACCACAACCACAGC
GACATATGCATAAACTGGTCGGGCGGACTGCATCACGCCAAGAAGTTCGA
GGCAAGCGGATTCTGCTACGTGAATGACATCGTCATCGGCATTCTGGAGC
TGCTTAAGTACCATCCTCGGGTGCTCTACATCGACATCGATGTGCACCAC
GGCGACGGGGTGCAGGAGGCGTTCTACCTTACGGACCGAGTGATGACGGC
TTCGTTCCACAAATACGGAAACTACTTTTTTCCCGGCACGGGAGACATGT
ACGAGATAGGCGCCGAATCGGGACGATACTACAGCGTTAATGTGCCGCTN
AAGGAGGGCATTGATGACCAGAGCTATTTTCAGGTGTTCAAACCCATAAT
TTCTGCCATTATGGACTTCTACCGGCCCACGGCTATCGTTTTGCAGTGTG
GCGCGGATTCACTAGCTGGAGATCGACTAGGTTGCTTCTCCCTGAGCA

BO07312.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG2128-PA 1317 Hdac3-RA 1..832 17..848 4141 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:21:33
Subject Length Description Subject Range Query Range Score Percent Strand
Hdac3-RA 1660 CG2128-RA 278..1109 17..848 4149 99.9 Plus
CG45100-RA 1660 CG45100-RA 278..1109 17..848 4149 99.9 Plus
Rpd3-RA 2124 CG7471-RA 615..806 428..619 270 76.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:21:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5473361..5473945 848..264 2914 99.8 Minus
3R 32079331 3R 5474165..5474323 175..17 795 100 Minus
3R 32079331 3R 5474015..5474103 263..175 445 100 Minus
3L 28110227 3L 4627863..4628054 428..619 270 76 Plus
Blast to na_te.dros performed on 2015-02-13 16:21:32 has no hits.

BO07312.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:15:05 Download gff for BO07312.5prime
Subject Subject Range Query Range Percent Splice Strand
Hdac3-PA 1..831 17..847 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:56:00 Download gff for BO07312.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2128-PA 1..831 17..847 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:11:09 Download gff for BO07312.5prime
Subject Subject Range Query Range Percent Splice Strand
Hdac3-RA 274..1108 13..847 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:42:51 Download gff for BO07312.5prime
Subject Subject Range Query Range Percent Splice Strand
CG45100-RA 274..1108 13..847 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:42:51 Download gff for BO07312.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5474015..5474103 175..263 100 <- Minus
3R 5474166..5474325 13..174 98   Minus
3R 5473362..5473945 264..847 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:11:09 Download gff for BO07312.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1299084..1299667 264..847 99 <- Minus
arm_3R 1299737..1299825 175..263 100 <- Minus
arm_3R 1299888..1300047 13..174 98   Minus

BO07312.complete Sequence

1348 bp (1348 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630747

> BO07312.complete
GAAGTTATCAGTCGACATGACGGACCGTAGGGTGTCGTACTTCTACAACG
CGGACGTGGGCAACTTCCACTATGGAGCCGGGCATCCCATGAAGCCGCAA
CGCCTGGCGGTCACTCACAGCCTGGTAATGAACTACGGACTGCACAAGAA
AATGAAGATCTACAGGCCGTACAAGGCCAGTGCGCAGGACATGCTCCGCT
TCCACAGCGACGAGTACATCGCCTACTTACAGCAGGTGACTCCACAAAAC
ATTCAGTGCAATTCCGTGGCCTATACGAAGTACCTGGCGCACTTCAGCGT
AGGCGAGGACTGTCCCGTGTTCGATGGCCTCTTCGACTTCTGTGCAATGT
ACACGGGTGCCTCGCTGGAGGGAGCCCAGAAGCTGAACCACAACCACAGC
GACATATGCATAAACTGGTCGGGCGGACTGCATCACGCCAAGAAGTTCGA
GGCAAGCGGATTCTGCTACGTGAATGACATCGTCATCGGCATTCTGGAGC
TGCTTAAGTACCATCCTCGGGTGCTCTACATCGACATCGATGTGCACCAC
GGCGACGGGGTGCAGGAGGCGTTCTACCTTACGGACCGAGTGATGACGGC
TTCGTTCCACAAATACGGAAACTACTTTTTTCCCGGCACGGGAGACATGT
ACGAGATAGGCGCCGAATCGGGACGATACTACAGCGTTAATGTGCCGCTA
AAGGAGGGCATTGATGACCAGAGCTATTTTCAGGTGTTCAAACCCATAAT
TTCTGCCATTATGGACTTCTACCGGCCCACGGCTATCGTTTTGCAGTGTG
GCGCGGATTCACTAGCTGGAGATCGACTAGGTTGCTTCTCCCTGAGCACC
AAGGGACATGGTGAGTGTGTCAAATTTGTGAAGGAACTGAACGTACCCAC
ATTGGTGGTCGGAGGCGGTGGCTACACCTTACGGAACGTGGCCCGCTGCT
GGACGCACGAGACCTCGCTGCTGGTGGACCAAGACATTGAAAATGACCTA
CCCGCCACCGAGTATTACGACTTTTTCGCCCCCGACTTTACACTCCATCC
AGAGATTAACTCACGCCAAGATAATGCTAACTCAAAGCAGTATCTTGAAC
TCATCGTTAAGCATGTGTATGAAAACCTTAAGATGTGCCAGCACTCGCCC
AGCGTCCAAATGGTGCAGACCCCGCCTGATGTGGACTTGGAGGAGCTGCG
CAGCAACCGGGAGGAGGCGAGTGATCCCGACGTGCGAATATCCGTAGCCG
ATGAGGACAAGCTGGTTGATGCTAAGAACGAGTTCTACGACGGCGATCAG
GACCAAGACAAGCCCGATTCGGCAGAAAGTGCAAGCTTTCTAGACCAT

BO07312.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:54:19
Subject Length Description Subject Range Query Range Score Percent Strand
Hdac3-RA 1317 CG2128-PA 1..1314 17..1330 6570 100 Plus
Rpd3-RA 1566 CG7471-PA 409..600 428..619 270 76 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:54:20
Subject Length Description Subject Range Query Range Score Percent Strand
Hdac3-RA 1660 CG2128-RA 278..1591 17..1330 6570 100 Plus
CG45100-RA 1660 CG45100-RA 278..1591 17..1330 6570 100 Plus
Rpd3-RA 2124 CG7471-RA 615..806 428..619 270 76 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:54:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5472879..5473945 1330..264 5335 100 Minus
3R 32079331 3R 5474165..5474323 175..17 795 100 Minus
3R 32079331 3R 5474015..5474103 263..175 445 100 Minus
3L 28110227 3L 4627863..4628054 428..619 270 76 Plus
Blast to na_te.dros performed on 2014-11-26 21:54:19 has no hits.

BO07312.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:09 Download gff for BO07312.complete
Subject Subject Range Query Range Percent Splice Strand
Hdac3-RA 1..1317 17..1331 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:16 Download gff for BO07312.complete
Subject Subject Range Query Range Percent Splice Strand
Hdac3-RA 272..1589 13..1330 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:40:23 Download gff for BO07312.complete
Subject Subject Range Query Range Percent Splice Strand
Hdac3-RA 278..1591 17..1332 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:10 Download gff for BO07312.complete
Subject Subject Range Query Range Percent Splice Strand
Hdac3-RA 272..1589 13..1330 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:45:28 Download gff for BO07312.complete
Subject Subject Range Query Range Percent Splice Strand
CG45100-RA 278..1591 17..1332 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:45:28 Download gff for BO07312.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5472877..5473945 264..1332 99 <- Minus
3R 5474015..5474103 175..263 100 <- Minus
3R 5474166..5474323 17..174 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:40:23 Download gff for BO07312.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1298599..1299667 264..1332 99 <- Minus
arm_3R 1299737..1299825 175..263 100 <- Minus
arm_3R 1299888..1300045 17..174 100   Minus

BO07312.pep Sequence

Translation from 16 to 1348

> BO07312.pep
MTDRRVSYFYNADVGNFHYGAGHPMKPQRLAVTHSLVMNYGLHKKMKIYR
PYKASAQDMLRFHSDEYIAYLQQVTPQNIQCNSVAYTKYLAHFSVGEDCP
VFDGLFDFCAMYTGASLEGAQKLNHNHSDICINWSGGLHHAKKFEASGFC
YVNDIVIGILELLKYHPRVLYIDIDVHHGDGVQEAFYLTDRVMTASFHKY
GNYFFPGTGDMYEIGAESGRYYSVNVPLKEGIDDQSYFQVFKPIISAIMD
FYRPTAIVLQCGADSLAGDRLGCFSLSTKGHGECVKFVKELNVPTLVVGG
GGYTLRNVARCWTHETSLLVDQDIENDLPATEYYDFFAPDFTLHPEINSR
QDNANSKQYLELIVKHVYENLKMCQHSPSVQMVQTPPDVDLEELRSNREE
ASDPDVRISVADEDKLVDAKNEFYDGDQDQDKPDSAESASFLDH

BO07312.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
Hdac3-PA 438 CG2128-PA 1..438 1..438 2360 100 Plus
Rpd3-PA 521 CG7471-PA 7..424 4..429 1390 57.5 Plus
HDAC6-PD 883 CG6170-PD 477..780 22..324 290 26.7 Plus
HDAC6-PF 1022 CG6170-PF 559..862 22..324 290 26.7 Plus
HDAC6-PE 1108 CG6170-PE 532..835 22..324 290 26.7 Plus
HDAC6-PD 883 CG6170-PD 81..338 54..309 217 26 Plus
HDAC6-PF 1022 CG6170-PF 163..420 54..309 217 26 Plus