Clone Sequence Records
BO07312.3prime Sequence
893 bp (850 high quality bases) assembled on 2005-12-04
> BO07312.3prime
ATGGTCTAGAAAGCTTGCACTTTCTGCCGAATCGGGCTTGTCTTGGTCCT
GATCGCCGTCGTAGAACTCGTTCTTAGCATCAACCAGCTTGTCCTCATCG
GCTACGGATATTCGCACGTCGGGATCACTCGCCTCCTCCCGGTTGCTGCG
CAGCTCCTCCAAGTCCACATCAGGCGGGGTCTGCACCATTTGGACGCTGG
GCGAGTGCTGGCACATCTTAAGGTTTTCATACACATGCTTAACGATGAGT
TCAAGATACTGCTTTGAGTTAGCATTATCTTGGCGTGAGTTAATCTCTGG
ATGGAGTGTAAAGTCGGGGGCGAAAAAGTCGTAATACTCGGTGGCGGGTA
GGTCATTTTCAATGTCTTGGTCCACCAGCAGCGAGGTCTCGTGCGTCCAG
CAGCGGGCCACGTTCCGTAAGGTGTAGCCACCGCCTCCGACCACCAATGT
GGGTACGTTCAGTTCCTTCACAAATTTGACACACTCACCATGTCCCTTGG
TGCTCAGGGAGAAGCAACCTAGTCGATCTCCAGCTAGTGAATCCGCGCCA
CACTGCAAAACGATAGCCGTGGGCCGGTAGAAGTCCATAATGGCAGAAAT
TATGGGTTTGAACACCTGAAAATAGCTCTGGTCATCAATGCCCTCCTTTA
GCGGCACATTAACGCTGTAGTATCGTCCCGATTCGGCGCCTATCTCGTAC
ATGTCTCCCGTGCCGGGAAAAAAGTAGTTTCCGTATTTGTGGAACGAAGC
CGTCATCACTCGGTCCGTAAGGTAGAACGCCTCCTGCACCCCGTCGCCGT
GGTGCACATCGATGTCGATGTAGAGCACCCGAGGATGGTACTTAAGCAGC
TCCAGAATGCCGATGACGATGTCATTCACGTAGCAGAATCCGC
BO07312.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:00:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2128-PA | 1317 | Hdac3-RA | 440..1314 | 893..19 | 4375 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:29:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hdac3-RA | 1660 | CG2128-RA | 717..1591 | 893..19 | 4375 | 100 | Minus |
CG45100-RA | 1660 | CG45100-RA | 717..1591 | 893..19 | 4375 | 100 | Minus |
Rpd3-RA | 2124 | CG7471-RA | 648..806 | 888..730 | 255 | 78.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:29:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5472879..5473753 | 19..893 | 4375 | 100 | Plus |
3L | 28110227 | 3L | 4627896..4628054 | 888..730 | 255 | 77.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:29:27 has no hits.
BO07312.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:15:04 Download gff for
BO07312.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hdac3-PA | 440..1317 | 18..893 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:55:59 Download gff for
BO07312.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2128-PA | 440..1317 | 18..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:05:52 Download gff for
BO07312.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hdac3-RA | 717..1591 | 19..893 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:00 Download gff for
BO07312.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG45100-RA | 717..1591 | 19..893 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:00 Download gff for
BO07312.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5472879..5473753 | 19..893 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:05:52 Download gff for
BO07312.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1298601..1299475 | 19..893 | 100 | | Plus |
BO07312.5prime Sequence
848 bp (803 high quality bases) assembled on 2005-12-04
> BO07312.5prime
GAAGTTATCAGTCGACATGACGGACCGTAGGGTGTCGTACTTCTACAACG
CGGACGTGGGCAACTTCCACTATGGAGCCGGGCATCCCATGAAGCCGCAA
CGCCTGGCGGTCACTCACAGCCTGGTAATGAACTACGGACTGCACAAGAA
AATGAAGATCTACAGGCCGTACAAGGCCAGTGCGCAGGACATGCTCCGCT
TCCACAGCGACGAGTACATCGCCTACTTACAGCAGGTGACTCCACAAAAC
ATTCAGTGCAATTCCGTGGCCTATACGAAGTACCTGGCGCACTTCAGCGT
AGGCGAGGACTGTCCCGTGTTCGATGGCCTCTTCGACTTCTGTGCAATGT
ACACGGGTGCCTCGCTGGAGGGAGCCCAGAAGCTGAACCACAACCACAGC
GACATATGCATAAACTGGTCGGGCGGACTGCATCACGCCAAGAAGTTCGA
GGCAAGCGGATTCTGCTACGTGAATGACATCGTCATCGGCATTCTGGAGC
TGCTTAAGTACCATCCTCGGGTGCTCTACATCGACATCGATGTGCACCAC
GGCGACGGGGTGCAGGAGGCGTTCTACCTTACGGACCGAGTGATGACGGC
TTCGTTCCACAAATACGGAAACTACTTTTTTCCCGGCACGGGAGACATGT
ACGAGATAGGCGCCGAATCGGGACGATACTACAGCGTTAATGTGCCGCTN
AAGGAGGGCATTGATGACCAGAGCTATTTTCAGGTGTTCAAACCCATAAT
TTCTGCCATTATGGACTTCTACCGGCCCACGGCTATCGTTTTGCAGTGTG
GCGCGGATTCACTAGCTGGAGATCGACTAGGTTGCTTCTCCCTGAGCA
BO07312.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:00:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2128-PA | 1317 | Hdac3-RA | 1..832 | 17..848 | 4141 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:21:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hdac3-RA | 1660 | CG2128-RA | 278..1109 | 17..848 | 4149 | 99.9 | Plus |
CG45100-RA | 1660 | CG45100-RA | 278..1109 | 17..848 | 4149 | 99.9 | Plus |
Rpd3-RA | 2124 | CG7471-RA | 615..806 | 428..619 | 270 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:21:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5473361..5473945 | 848..264 | 2914 | 99.8 | Minus |
3R | 32079331 | 3R | 5474165..5474323 | 175..17 | 795 | 100 | Minus |
3R | 32079331 | 3R | 5474015..5474103 | 263..175 | 445 | 100 | Minus |
3L | 28110227 | 3L | 4627863..4628054 | 428..619 | 270 | 76 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:21:32 has no hits.
BO07312.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:15:05 Download gff for
BO07312.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hdac3-PA | 1..831 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:56:00 Download gff for
BO07312.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2128-PA | 1..831 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:11:09 Download gff for
BO07312.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hdac3-RA | 274..1108 | 13..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:42:51 Download gff for
BO07312.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG45100-RA | 274..1108 | 13..847 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:42:51 Download gff for
BO07312.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5474015..5474103 | 175..263 | 100 | <- | Minus |
3R | 5474166..5474325 | 13..174 | 98 | | Minus |
3R | 5473362..5473945 | 264..847 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:11:09 Download gff for
BO07312.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1299084..1299667 | 264..847 | 99 | <- | Minus |
arm_3R | 1299737..1299825 | 175..263 | 100 | <- | Minus |
arm_3R | 1299888..1300047 | 13..174 | 98 | | Minus |
BO07312.complete Sequence
1348 bp (1348 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630747
> BO07312.complete
GAAGTTATCAGTCGACATGACGGACCGTAGGGTGTCGTACTTCTACAACG
CGGACGTGGGCAACTTCCACTATGGAGCCGGGCATCCCATGAAGCCGCAA
CGCCTGGCGGTCACTCACAGCCTGGTAATGAACTACGGACTGCACAAGAA
AATGAAGATCTACAGGCCGTACAAGGCCAGTGCGCAGGACATGCTCCGCT
TCCACAGCGACGAGTACATCGCCTACTTACAGCAGGTGACTCCACAAAAC
ATTCAGTGCAATTCCGTGGCCTATACGAAGTACCTGGCGCACTTCAGCGT
AGGCGAGGACTGTCCCGTGTTCGATGGCCTCTTCGACTTCTGTGCAATGT
ACACGGGTGCCTCGCTGGAGGGAGCCCAGAAGCTGAACCACAACCACAGC
GACATATGCATAAACTGGTCGGGCGGACTGCATCACGCCAAGAAGTTCGA
GGCAAGCGGATTCTGCTACGTGAATGACATCGTCATCGGCATTCTGGAGC
TGCTTAAGTACCATCCTCGGGTGCTCTACATCGACATCGATGTGCACCAC
GGCGACGGGGTGCAGGAGGCGTTCTACCTTACGGACCGAGTGATGACGGC
TTCGTTCCACAAATACGGAAACTACTTTTTTCCCGGCACGGGAGACATGT
ACGAGATAGGCGCCGAATCGGGACGATACTACAGCGTTAATGTGCCGCTA
AAGGAGGGCATTGATGACCAGAGCTATTTTCAGGTGTTCAAACCCATAAT
TTCTGCCATTATGGACTTCTACCGGCCCACGGCTATCGTTTTGCAGTGTG
GCGCGGATTCACTAGCTGGAGATCGACTAGGTTGCTTCTCCCTGAGCACC
AAGGGACATGGTGAGTGTGTCAAATTTGTGAAGGAACTGAACGTACCCAC
ATTGGTGGTCGGAGGCGGTGGCTACACCTTACGGAACGTGGCCCGCTGCT
GGACGCACGAGACCTCGCTGCTGGTGGACCAAGACATTGAAAATGACCTA
CCCGCCACCGAGTATTACGACTTTTTCGCCCCCGACTTTACACTCCATCC
AGAGATTAACTCACGCCAAGATAATGCTAACTCAAAGCAGTATCTTGAAC
TCATCGTTAAGCATGTGTATGAAAACCTTAAGATGTGCCAGCACTCGCCC
AGCGTCCAAATGGTGCAGACCCCGCCTGATGTGGACTTGGAGGAGCTGCG
CAGCAACCGGGAGGAGGCGAGTGATCCCGACGTGCGAATATCCGTAGCCG
ATGAGGACAAGCTGGTTGATGCTAAGAACGAGTTCTACGACGGCGATCAG
GACCAAGACAAGCCCGATTCGGCAGAAAGTGCAAGCTTTCTAGACCAT
BO07312.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:54:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hdac3-RA | 1317 | CG2128-PA | 1..1314 | 17..1330 | 6570 | 100 | Plus |
Rpd3-RA | 1566 | CG7471-PA | 409..600 | 428..619 | 270 | 76 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:54:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hdac3-RA | 1660 | CG2128-RA | 278..1591 | 17..1330 | 6570 | 100 | Plus |
CG45100-RA | 1660 | CG45100-RA | 278..1591 | 17..1330 | 6570 | 100 | Plus |
Rpd3-RA | 2124 | CG7471-RA | 615..806 | 428..619 | 270 | 76 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:54:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5472879..5473945 | 1330..264 | 5335 | 100 | Minus |
3R | 32079331 | 3R | 5474165..5474323 | 175..17 | 795 | 100 | Minus |
3R | 32079331 | 3R | 5474015..5474103 | 263..175 | 445 | 100 | Minus |
3L | 28110227 | 3L | 4627863..4628054 | 428..619 | 270 | 76 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:54:19 has no hits.
BO07312.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:09 Download gff for
BO07312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hdac3-RA | 1..1317 | 17..1331 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:16 Download gff for
BO07312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hdac3-RA | 272..1589 | 13..1330 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:40:23 Download gff for
BO07312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hdac3-RA | 278..1591 | 17..1332 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:10 Download gff for
BO07312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hdac3-RA | 272..1589 | 13..1330 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:45:28 Download gff for
BO07312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG45100-RA | 278..1591 | 17..1332 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:45:28 Download gff for
BO07312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5472877..5473945 | 264..1332 | 99 | <- | Minus |
3R | 5474015..5474103 | 175..263 | 100 | <- | Minus |
3R | 5474166..5474323 | 17..174 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:40:23 Download gff for
BO07312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1298599..1299667 | 264..1332 | 99 | <- | Minus |
arm_3R | 1299737..1299825 | 175..263 | 100 | <- | Minus |
arm_3R | 1299888..1300045 | 17..174 | 100 | | Minus |
BO07312.pep Sequence
Translation from 16 to 1348
> BO07312.pep
MTDRRVSYFYNADVGNFHYGAGHPMKPQRLAVTHSLVMNYGLHKKMKIYR
PYKASAQDMLRFHSDEYIAYLQQVTPQNIQCNSVAYTKYLAHFSVGEDCP
VFDGLFDFCAMYTGASLEGAQKLNHNHSDICINWSGGLHHAKKFEASGFC
YVNDIVIGILELLKYHPRVLYIDIDVHHGDGVQEAFYLTDRVMTASFHKY
GNYFFPGTGDMYEIGAESGRYYSVNVPLKEGIDDQSYFQVFKPIISAIMD
FYRPTAIVLQCGADSLAGDRLGCFSLSTKGHGECVKFVKELNVPTLVVGG
GGYTLRNVARCWTHETSLLVDQDIENDLPATEYYDFFAPDFTLHPEINSR
QDNANSKQYLELIVKHVYENLKMCQHSPSVQMVQTPPDVDLEELRSNREE
ASDPDVRISVADEDKLVDAKNEFYDGDQDQDKPDSAESASFLDH
BO07312.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hdac3-PA | 438 | CG2128-PA | 1..438 | 1..438 | 2360 | 100 | Plus |
Rpd3-PA | 521 | CG7471-PA | 7..424 | 4..429 | 1390 | 57.5 | Plus |
HDAC6-PD | 883 | CG6170-PD | 477..780 | 22..324 | 290 | 26.7 | Plus |
HDAC6-PF | 1022 | CG6170-PF | 559..862 | 22..324 | 290 | 26.7 | Plus |
HDAC6-PE | 1108 | CG6170-PE | 532..835 | 22..324 | 290 | 26.7 | Plus |
HDAC6-PD | 883 | CG6170-PD | 81..338 | 54..309 | 217 | 26 | Plus |
HDAC6-PF | 1022 | CG6170-PF | 163..420 | 54..309 | 217 | 26 | Plus |